rna5488, rna5488 (mRNA) Nannochloropsis gaditana

Overview
Namerna5488
Unique Namerna5488
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1047
Alignment locationCM002466.1:77914..78235 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100722g3.10565.mrna
Orig protein idgnl|cribi|Naga_100722g3.10565
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:77914..78235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100722g3gene5300Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5488rna5488-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25199.1cds5474Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5488 ID=rna5488|Name=rna5488|organism=Nannochloropsis gaditana|type=mRNA|length=1047bp
CAAGACTCTGCCACAGGAAAGACGACACTGATGCTTCGCTATGCTTCCAA
GGCGCGGTCCCTTCCCGCCTCCCTGTTGCTTGTCTTTCTATTTGGTCTTC
TGACAACATTTTTCGTGTCCTGTGCCACAGCCATCGAGACATCTACAACT
GCTTACACAGAGGAGCTGGATGCGCGCACTTCATCTTCGCACTCAAATCT
TCGTCCACGTACAGATCATCCATTCGATAGACTTGCAGACTTGGAAGGTA
CCAAAGGGTCTTTAAATGGCAAAATACGCCCAAAATCATCAGAGCGTGAG
ATTTTTGTGCCGCCAGCAGCCGAGGAGGAGACTCTCAACCCTCTTCCTCG
TTGTCCTAAGAATGCACATTACTCTTTCTGCGCGATCGAGCCGAAATGCG
CTGCCACCTGCGCTGAACACAGAGACAGCCAGGAAAAGGAGGCAACAGGA
GTGGTCAAAATGTGTAACAGAATGTGCTACCAGCGCTGTGATTGTCTACC
AGACTTTTATTTACTCGATGGCTTTTGCATATCGGAGGAAGCGTGCCTGT
CGATTGGGGATGCCAAAACTGCAAGCAAAAAGAGACAGGCCGTGGAGGAA
GCCCTGAAGGGTTTCGACCCAAAGATGGACCGAATTTTCCCCCGCGACGA
TTCCCTCGAAGAAAGAGGAGGGAGGGAGGGAGGGGAGGAGGGAGGGAGGG
AGGAAGGGGGGGCTCCATTTCCCTTTGGGACGGGAAGCGAGGACGGTATT
TTGGACGGCGTCAGCGATGTCCTTGGGGCTGTCACAGGAGGCTTGTGGCC
AGACGAAGGGCGGGAGACAGCAGGGAGAAAAGAGGTTGGGGTTTAGTGGA
AAGGACCATACAAGGGTCCAAAGCGTCACGGAAGCGTTGTTCCAGTCGTT
AGGACGTAAATTTATTCGAGTTCCTCCTCCTCCTGATCCGAAAGGACACA
TCTACGGTATCTGTTGCTCTTACTTACCCCCCCTTTCAGAAGTTATTGAG
ACACTGCAACATCACTATTTGCCTTCGTGATTTTTTAAGGAAAAGCC
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protein sequence of rna5488

>rna5488-protein ID=rna5488-protein|Name=rna5488|organism=Nannochloropsis gaditana|type=polypeptide|length=79bp
MLASIISYHIKNSRLVMHFLDRDISEMFRYFYGFLIDPSWQKALRPVCIR
HFVRKSKEKRERRSWEEYCMNIKDKNLKK
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mRNA from alignment at CM002466.1:77914..78235-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5488 ID=rna5488|Name=rna5488|organism=Nannochloropsis gaditana|type=mRNA|length=322bp|location=Sequence derived from alignment at CM002466.1:77914..78235- (Nannochloropsis gaditana)
ATGCTCGCATCTATCATCTCGTATCACATTAAAAATTCAAGACTTGTGAT
GCATTTCTTAGATCGGGATATAAGTGAAATGTTTAGATACTTTTATGGTT
TCCTCATCGACCCTAGTTGGCAAGTGCATGTGATATGATTCTTCCATTGC
TTCAAAACTCTCACACACAAATATCAATTCCTTCATTGTACCAACTATTG
TTTAGAAAGCACTTCGTCCCGTGTGCATAAGACACTTCGTCCGAAAGAGT
AAAGAGAAAAGAGAACGTAGGTCATGGGAAGAGTATTGCATGAACATCAA
AGACAAGAATCTGAAGAAATAG
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Coding sequence (CDS) from alignment at CM002466.1:77914..78235-

>rna5488 ID=rna5488|Name=rna5488|organism=Nannochloropsis gaditana|type=CDS|length=480bp|location=Sequence derived from alignment at CM002466.1:77914..78235- (Nannochloropsis gaditana)
AAAGCACTTCGTCCCGTGTGCATAAGACACTTCGTCCGAAAGAGTAAAGA
GAAAAGAGAACGTAGGTCATGGGAAGAGTATTGCATGAACATCAAAGACA
AGAATCTGAAGAAATAGATGCTCGCATCTATCATCTCGTATCACATTAAA
AATTCAAGACTTGTGATGCATTTCTTAGATCGGGATATAAGTGAAATGTT
TAGATACTTTTATGGTTTCCTCATCGACCCTAGTTGGCAAAAAGCACTTC
GTCCCGTGTGCATAAGACACTTCGTCCGAAAGAGTAAAGAGAAAAGAGAA
CGTAGGTCATGGGAAGAGTATTGCATGAACATCAAAGACAAGAATCTGAA
GAAATAGATGCTCGCATCTATCATCTCGTATCACATTAAAAATTCAAGAC
TTGTGATGCATTTCTTAGATCGGGATATAAGTGAAATGTTTAGATACTTT
TATGGTTTCCTCATCGACCCTAGTTGGCAA
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Synonyms
Publications