rna5487, rna5487 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5487
Unique Name	rna5487
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1403
Alignment location	CM002466.1:75569..77885 +

Link to JBrowse

Properties


Property Name	Value
Product	Trypsin Inhibitor-like, cysteine rich domain protein
Orig transcript id	gnl\|cribi\|Naga_100722g4.10567.mrna
Orig protein id	gnl\|cribi\|Naga_100722g4.10567
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:75569..77885 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100722g4	gene5299	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5487	rna5487-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25201.1	cds5473	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:75569..77885+
coding sequence from alignment at CM002466.1:75569..77885+

mRNA sequence

>rna5487 ID=rna5487|Name=rna5487|organism=Nannochloropsis gaditana|type=mRNA|length=1403bp
CAAGACTCTGCCACAGGAAAGACGACACTGATGCTTCGCTATGCTTCCAA
GGCGCGGTCCCTTCCCGCCTCCCTGTTGCTTGTCTTTCTATTTGGTCTTC
TGACAACATTTTTCGTGTCCTGTGCCACAGCCATCGAGACATCTACAACT
GCTTACACAGAGGAGCTGGATGCGCGCACTTCATCTTCGCACTCAAATCT
TCGTCCACGTACAGATCATCCATTCGATAGACTTGCAGACTTGGAAGGTA
CCAAAGGGTCTTTAAATGGCAAAATACGCCCAAAATCATCAGAGCGTGAG
ATTTTTGTGCCGCCAGCAGCCGAGGAGGAGACTCTCAACCCTCTTCCTCG
TTGTCCTAAGAATGCACATTACTCTTTCTGCGCGATCGAGCCGAAATGCG
CTGCCACCTGCGCTGAACACAGAGACAGCCAGGAAAAGGAGGCAACAGGA
GTGGTCAAAATGTGTAACAGAATGTGCTACCAGCGCTGTGATTGTCTACC
AGACTTTTATTTACTCGATGGCTTTTGCATATCGGAGGAAGCGTGCCTGT
CGATTGGGGATGCCAAAACTGCAAGCAAAAAGAGACAGGTCAGGGAGGGA
GGGAAGAAAAGGGGAAACGGAAGAAAATCACGAGGAGGAAGAGAAAAGCA
CCGGTCCACATCGTCACGCCTACCTGCTTGACTCTGCCCTCAGAGAAGGC
CCTCCCTGACACTAATTCATACCCTGCAAATCCTCAAAAGCCCTTCATTG
CTTGCCTAAACGCGGCGCTCGGCCGCCTTTTGTCCTCCTTCGTCTCGGTC
TTGACCTGATCATTGGCTGCCTTCTCCCCTCCCTCCCTTCCTTATCTCAT
TTTTTAGGCCGTGGAGGAAGCCCTGAAGGGTTTCGACCCAAAGATGGACC
GAATTTTCCCCCGCGACGATTCCCTCGAAGAAAGAGGAGGGAGGGAGGGA
GGGGAGGAGGGAGGGAGGGAGGAAGGGGGGGCTCCATTTCCCTTTGGGAC
GGGAAGCGAGGACGGTATTTTGGACGGCGTCAGCGATGTCCTTGGGGCTG
TCACAGGAGGCTTGTGGCCAGACGAAGGGCGGGTACGTAAGCGTGGATGG
AACGAGGGAGGGAAAAAAGGGAAAATGCGGGCACTCATGGTTTCATTTGC
CCTTTGCGTGCATACTCAGGAGACAGCAGGGAGAAAAGAGGTTGGGGTTT
AGTGGAAAGGACCATACAAGGGTCCAAAGCGTCACGGAAGCGTTGTTCCA
GTCGTTAGGACGTAAATTTATTCGAGTTCCTCCTCCTCCTGATCCGAAAG
GACACATCTACGGTATCTGTTGCTCTTACTTACCCCCCCTTTCAGAAGTT
ATTGAGACACTGCAACATCACTATTTGCCTTCGTGATTTTTTAAGGAAAA
GCC

protein sequence of rna5487

>rna5487-protein ID=rna5487-protein|Name=rna5487|organism=Nannochloropsis gaditana|type=polypeptide|length=271bp
MLRYASKARSLPASLLLVFLFGLLTTFFVSCATAIETSTTAYTEELDART
SSSHSNLRPRTDHPFDRLADLEGTKGSLNGKIRPKSSEREIFVPPAAEEE
TLNPLPRCPKNAHYSFCAIEPKCAATCAEHRDSQEKEATGVVKMCNRMCY
QRCDCLPDFYLLDGFCISEEACLSIGDAKTASKKRQAVEEALKGFDPKMD
RIFPRDDSLEERGGREGGEEGGREEGGAPFPFGTGSEDGILDGVSDVLGA
VTGGLWPDEGRETAGRKEVGV

mRNA from alignment at CM002466.1:75569..77885+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5487 ID=rna5487|Name=rna5487|organism=Nannochloropsis gaditana|type=mRNA|length=2317bp|location=Sequence derived from alignment at CM002466.1:75569..77885+ (Nannochloropsis gaditana)
CAAGACTCTGCCACAGGAAAGACGACACTGATGCTTCGCTATGCTTCCAA
GGCGCggtcccttcccgcctccctgtTGCTTGTCTTTCTATTTGGTCTTC
TGACAACATTTTTCGTGTCCTGTGCCACAGCCATCGAGACATCTACAACT
GGTAGGTTTTGAAAGGCAGATTTTCCCTCACTCCTACCCGCATtaatttt
tcttcttccaactCCCTTCTTGCGTGTTCATTGCCGCTAGCTTACACAGA
GGAGCTGGATGCGCGCACTTCATCTTCGCACTCAAATCTTCGTCCACGTA
CAGATCATCCATTCGATAGACTTGCAGACTTGGAAGGGTAAGTGAGAAGG
ATTGACGTCGGAAATTGTCCTGAAGGAGGTTTTGAGTAGGAGACATACTG
TACACAGTCCGATGAGTTTCTCCATCATCTACTCGGTTTCTTTCTATTTA
AACAGTACCAAAGGGTCTTTAAATGGCAAAATACGCCCAAAATCATCAGA
GCGTGAGATTTTTGTGCCGCCAgcagccgaggaggagactctcaaccctc
ttcctcgttgtCCTAAGAATGCACATTACTCTTTCTGCGCGATCGAGCCG
GTAATTCTATGAGATTTACCCAGTACCTTATAAGCAATCGAAATTTGTCG
ACTACTTCAGGCACAGATCATTCTGATCCCACTACATGTCAGCAAAACTT
TCTCTTCTTGAGAACTTGACTTGCTTTTTTCCATTCCATTTGCCTTCCCT
GCTCCTGATTTGAAAGCGTCAAATACTCTGTACCTGCTTTATTCTATATT
GTGTGTCCTTGCAGCTTTTCCACAGCATTTGGGCTACTGTATGTACGAAC
GTGATATATTTACATGCATTCTCACTTTCGTCCTTCGCAGAAATGCGCTG
CCACCTGCGCTGAACACAGAGACagccaggaaaaggaggcaacAGGAGTG
GTCAAAATGTGTAACAGAATGTGCTACCAGCGCTGTGATTGTCTACCAGA
CTTTTATTTACTCGATGTAGGgacggcgggagaaagggggggagtggggg
ggggaggggggagggggcaagtGAAACTTTGGTTCGGAGGTACGATATGA
AGGAGTGATGTTCTTCTTTGATTTATAATATGTGCcatgtcttctccttt
ttctccactTCACATTGTATGCGCGGCTTTCTACCCTAATTATGCGCTGC
ATTATTCTTCCTCTCAAGACAATTTCTCAGACtgcgctttccccctccct
ctctcatgtGAAGgtccttcatttcccctccccttgtcgcTTACTTGTCG
TGTGTGTTTCCTCCGCCTATCTCTTGACTGCACTCTATTCCATGCCCGAT
GCGCCGCCGCTCCGCGcaaatccctccctcccctctctttccttccctcc
tcacttctctccccccttggTCCTGTCTATCAGGGCTTTTGCATATCGGA
GGAAGCGTGCCTGTCGATTGGGGATGCCAAAACTGCAAGCAAAAAGAGAc
aggtcagggagggagggaagaaaaggggaaacgGAAGAAAatcacgagga
ggaagagaaaagcaCCGGTCCACATCGTCACGCCTACCTGCTTGACTCTG
CCCTCAGAGAAGGCCCTCCCTGACACTAATTCATACCCTGCAAATCCTCA
AAAGCCCTTCATTGCTTGCCTAAACGCGGCGCTCGGCCGCCTtttgtcct
ccttcgtctcggTCTTGACCTGATCATTGGctgccttctcccctccctcc
cttccttatCTCATTTTTtaggccgtggaggaagccctgAAGGGTTTCGA
CCCAAAGATGGACCGAATTTTCCCCCGCGACGATTCCctcgaagaaagag
gagggagggagggaggggaggagggagggagggaggaagggggggctcCA
TTTCCCTTTGGGACGGGAAGCGAGGACGGTATTTTGGACGGCGTCAGCGA
TGTCCTTGGGGCTGTCACAGGAGGCTTGTGGCCAGACGAAGGGCGGGTAC
GTAAGCGTGGatggaacgagggagggaaaaaagggaaaatgCGGGCACTC
ATGGTTTCATTTGCCCTTTGCGTGCATACTCAGGAGACAgcagggagaaa
agaggttGGGGTTTAGTGGAAAGGACCATACAAGGGTCCAAAGCGTCACG
GAAGCGTTGTTCCAGTCGTTAGGACGTAAATTTATTCgagttcctcctcc
tcctgatccGAAAGGACACATCTACGGTATCTGTTGCTCTTACTTACCCC
CCCTTTCAGAAGTTATTGAGACACTGCAACATCACTATTTGCCTTCGTGA
TTTTTTAAGGAAAAGCC

Coding sequence (CDS) from alignment at CM002466.1:75569..77885+

>rna5487 ID=rna5487|Name=rna5487|organism=Nannochloropsis gaditana|type=CDS|length=5712bp|location=Sequence derived from alignment at CM002466.1:75569..77885+ (Nannochloropsis gaditana)
ATGCTTCGCTATGCTTCCAAGGCGCggtcccttcccgcctccctgtTGCT
TGTCTTTCTATTTGGTCTTCTGACAACATTTTTCGTGTCCTGTGCCACAG
CCATCGAGACATCTACAACTGCTTACACAGAGGAGCTGGATGCGCGCACT
TCATCTTCGCACTCAAATCTTCGTCCACGTACAGATCATCCATTCGATAG
ACTTGCAGACTTGGAAGGTACCAAAGGGTCTTTAAATGGCAAAATACGCC
CAAAATCATCAGAGCGTGAGATTTTTGTGCCGCCAgcagccgaggaggag
actctcaaccctcttcctcgttgtCCTAAGAATGCACATTACTCTTTCTG
CGCGATCGAGCCGAAATGCGCTGCCACCTGCGCTGAACACAGAGACagcc
aggaaaaggaggcaacAGGAGTGGTCAAAATGTGTAACAGAATGTGCTAC
CAGCGCTGTGATTGTCTACCAGACTTTTATTTACTCGATGGCTTTTGCAT
ATCGGAGGAAGCGTGCCTGTCGATTGGGGATGCCAAAACTGCAAGCAAAA
AGAGAcaggccgtggaggaagccctgAAGGGTTTCGACCCAAAGATGGAC
CGAATTTTCCCCCGCGACGATTCCctcgaagaaagaggagggagggaggg
aggggaggagggagggagggaggaagggggggctcCATTTCCCTTTGGGA
CGGGAAGCGAGGACGGTATTTTGGACGGCGTCAGCGATGTCCTTGGGGCT
GTCACAGGAGGCTTGTGGCCAGACGAAGGGCGGGAGACAgcagggagaaa
agaggttGGGGTTTAGATGCTTCGCTATGCTTCCAAGGCGCggtcccttc
ccgcctccctgtTGCTTGTCTTTCTATTTGGTCTTCTGACAACATTTTTC
GTGTCCTGTGCCACAGCCATCGAGACATCTACAACTGCTTACACAGAGGA
GCTGGATGCGCGCACTTCATCTTCGCACTCAAATCTTCGTCCACGTACAG
ATCATCCATTCGATAGACTTGCAGACTTGGAAGGTACCAAAGGGTCTTTA
AATGGCAAAATACGCCCAAAATCATCAGAGCGTGAGATTTTTGTGCCGCC
AgcagccgaggaggagactctcaaccctcttcctcgttgtCCTAAGAATG
CACATTACTCTTTCTGCGCGATCGAGCCGAAATGCGCTGCCACCTGCGCT
GAACACAGAGACagccaggaaaaggaggcaacAGGAGTGGTCAAAATGTG
TAACAGAATGTGCTACCAGCGCTGTGATTGTCTACCAGACTTTTATTTAC
TCGATGGCTTTTGCATATCGGAGGAAGCGTGCCTGTCGATTGGGGATGCC
AAAACTGCAAGCAAAAAGAGAcaggccgtggaggaagccctgAAGGGTTT
CGACCCAAAGATGGACCGAATTTTCCCCCGCGACGATTCCctcgaagaaa
gaggagggagggagggaggggaggagggagggagggaggaagggggggct
cCATTTCCCTTTGGGACGGGAAGCGAGGACGGTATTTTGGACGGCGTCAG
CGATGTCCTTGGGGCTGTCACAGGAGGCTTGTGGCCAGACGAAGGGCGGG
AGACAgcagggagaaaagaggttGGGGTTTAGATGCTTCGCTATGCTTCC
AAGGCGCggtcccttcccgcctccctgtTGCTTGTCTTTCTATTTGGTCT
TCTGACAACATTTTTCGTGTCCTGTGCCACAGCCATCGAGACATCTACAA
CTGCTTACACAGAGGAGCTGGATGCGCGCACTTCATCTTCGCACTCAAAT
CTTCGTCCACGTACAGATCATCCATTCGATAGACTTGCAGACTTGGAAGG
TACCAAAGGGTCTTTAAATGGCAAAATACGCCCAAAATCATCAGAGCGTG
AGATTTTTGTGCCGCCAgcagccgaggaggagactctcaaccctcttcct
cgttgtCCTAAGAATGCACATTACTCTTTCTGCGCGATCGAGCCGAAATG
CGCTGCCACCTGCGCTGAACACAGAGACagccaggaaaaggaggcaacAG
GAGTGGTCAAAATGTGTAACAGAATGTGCTACCAGCGCTGTGATTGTCTA
CCAGACTTTTATTTACTCGATGGCTTTTGCATATCGGAGGAAGCGTGCCT
GTCGATTGGGGATGCCAAAACTGCAAGCAAAAAGAGAcaggccgtggagg
aagccctgAAGGGTTTCGACCCAAAGATGGACCGAATTTTCCCCCGCGAC
GATTCCctcgaagaaagaggagggagggagggaggggaggagggagggag
ggaggaagggggggctcCATTTCCCTTTGGGACGGGAAGCGAGGACGGTA
TTTTGGACGGCGTCAGCGATGTCCTTGGGGCTGTCACAGGAGGCTTGTGG
CCAGACGAAGGGCGGGAGACAgcagggagaaaagaggttGGGGTTTAGAT
GCTTCGCTATGCTTCCAAGGCGCggtcccttcccgcctccctgtTGCTTG
TCTTTCTATTTGGTCTTCTGACAACATTTTTCGTGTCCTGTGCCACAGCC
ATCGAGACATCTACAACTGCTTACACAGAGGAGCTGGATGCGCGCACTTC
ATCTTCGCACTCAAATCTTCGTCCACGTACAGATCATCCATTCGATAGAC
TTGCAGACTTGGAAGGTACCAAAGGGTCTTTAAATGGCAAAATACGCCCA
AAATCATCAGAGCGTGAGATTTTTGTGCCGCCAgcagccgaggaggagac
tctcaaccctcttcctcgttgtCCTAAGAATGCACATTACTCTTTCTGCG
CGATCGAGCCGAAATGCGCTGCCACCTGCGCTGAACACAGAGACagccag
gaaaaggaggcaacAGGAGTGGTCAAAATGTGTAACAGAATGTGCTACCA
GCGCTGTGATTGTCTACCAGACTTTTATTTACTCGATGGCTTTTGCATAT
CGGAGGAAGCGTGCCTGTCGATTGGGGATGCCAAAACTGCAAGCAAAAAG
AGAcaggccgtggaggaagccctgAAGGGTTTCGACCCAAAGATGGACCG
AATTTTCCCCCGCGACGATTCCctcgaagaaagaggagggagggagggag
gggaggagggagggagggaggaagggggggctcCATTTCCCTTTGGGACG
GGAAGCGAGGACGGTATTTTGGACGGCGTCAGCGATGTCCTTGGGGCTGT
CACAGGAGGCTTGTGGCCAGACGAAGGGCGGGAGACAgcagggagaaaag
aggttGGGGTTTAGATGCTTCGCTATGCTTCCAAGGCGCggtcccttccc
gcctccctgtTGCTTGTCTTTCTATTTGGTCTTCTGACAACATTTTTCGT
GTCCTGTGCCACAGCCATCGAGACATCTACAACTGCTTACACAGAGGAGC
TGGATGCGCGCACTTCATCTTCGCACTCAAATCTTCGTCCACGTACAGAT
CATCCATTCGATAGACTTGCAGACTTGGAAGGTACCAAAGGGTCTTTAAA
TGGCAAAATACGCCCAAAATCATCAGAGCGTGAGATTTTTGTGCCGCCAg
cagccgaggaggagactctcaaccctcttcctcgttgtCCTAAGAATGCA
CATTACTCTTTCTGCGCGATCGAGCCGAAATGCGCTGCCACCTGCGCTGA
ACACAGAGACagccaggaaaaggaggcaacAGGAGTGGTCAAAATGTGTA
ACAGAATGTGCTACCAGCGCTGTGATTGTCTACCAGACTTTTATTTACTC
GATGGCTTTTGCATATCGGAGGAAGCGTGCCTGTCGATTGGGGATGCCAA
AACTGCAAGCAAAAAGAGAcaggccgtggaggaagccctgAAGGGTTTCG
ACCCAAAGATGGACCGAATTTTCCCCCGCGACGATTCCctcgaagaaaga
ggagggagggagggaggggaggagggagggagggaggaagggggggctcC
ATTTCCCTTTGGGACGGGAAGCGAGGACGGTATTTTGGACGGCGTCAGCG
ATGTCCTTGGGGCTGTCACAGGAGGCTTGTGGCCAGACGAAGGGCGGGAG
ACAgcagggagaaaagaggttGGGGTTTAGATGCTTCGCTATGCTTCCAA
GGCGCggtcccttcccgcctccctgtTGCTTGTCTTTCTATTTGGTCTTC
TGACAACATTTTTCGTGTCCTGTGCCACAGCCATCGAGACATCTACAACT
GCTTACACAGAGGAGCTGGATGCGCGCACTTCATCTTCGCACTCAAATCT
TCGTCCACGTACAGATCATCCATTCGATAGACTTGCAGACTTGGAAGGTA
CCAAAGGGTCTTTAAATGGCAAAATACGCCCAAAATCATCAGAGCGTGAG
ATTTTTGTGCCGCCAgcagccgaggaggagactctcaaccctcttcctcg
ttgtCCTAAGAATGCACATTACTCTTTCTGCGCGATCGAGCCGAAATGCG
CTGCCACCTGCGCTGAACACAGAGACagccaggaaaaggaggcaacAGGA
GTGGTCAAAATGTGTAACAGAATGTGCTACCAGCGCTGTGATTGTCTACC
AGACTTTTATTTACTCGATGGCTTTTGCATATCGGAGGAAGCGTGCCTGT
CGATTGGGGATGCCAAAACTGCAAGCAAAAAGAGAcaggccgtggaggaa
gccctgAAGGGTTTCGACCCAAAGATGGACCGAATTTTCCCCCGCGACGA
TTCCctcgaagaaagaggagggagggagggaggggaggagggagggaggg
aggaagggggggctcCATTTCCCTTTGGGACGGGAAGCGAGGACGGTATT
TTGGACGGCGTCAGCGATGTCCTTGGGGCTGTCACAGGAGGCTTGTGGCC
AGACGAAGGGCGGGAGACAgcagggagaaaagaggttGGGGTTTAGATGC
TTCGCTATGCTTCCAAGGCGCggtcccttcccgcctccctgtTGCTTGTC
TTTCTATTTGGTCTTCTGACAACATTTTTCGTGTCCTGTGCCACAGCCAT
CGAGACATCTACAACTGCTTACACAGAGGAGCTGGATGCGCGCACTTCAT
CTTCGCACTCAAATCTTCGTCCACGTACAGATCATCCATTCGATAGACTT
GCAGACTTGGAAGGTACCAAAGGGTCTTTAAATGGCAAAATACGCCCAAA
ATCATCAGAGCGTGAGATTTTTGTGCCGCCAgcagccgaggaggagactc
tcaaccctcttcctcgttgtCCTAAGAATGCACATTACTCTTTCTGCGCG
ATCGAGCCGAAATGCGCTGCCACCTGCGCTGAACACAGAGACagccagga
aaaggaggcaacAGGAGTGGTCAAAATGTGTAACAGAATGTGCTACCAGC
GCTGTGATTGTCTACCAGACTTTTATTTACTCGATGGCTTTTGCATATCG
GAGGAAGCGTGCCTGTCGATTGGGGATGCCAAAACTGCAAGCAAAAAGAG
AcaggccgtggaggaagccctgAAGGGTTTCGACCCAAAGATGGACCGAA
TTTTCCCCCGCGACGATTCCctcgaagaaagaggagggagggagggaggg
gaggagggagggagggaggaagggggggctcCATTTCCCTTTGGGACGGG
AAGCGAGGACGGTATTTTGGACGGCGTCAGCGATGTCCTTGGGGCTGTCA
CAGGAGGCTTGTGGCCAGACGAAGGGCGGGAGACAgcagggagaaaagag
gttGGGGTTTAG

Synonyms

Publications