rna5482, rna5482 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5482
Unique Name	rna5482
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2359
Alignment location	CM002466.1:58170..60346 +

Link to JBrowse

Properties


Property Name	Value
Product	urea active transporter-like protein
Orig transcript id	gnl\|cribi\|Naga_100311g2.1358.mrna
Orig protein id	gnl\|cribi\|Naga_100311g2.1358
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:58170..60346 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100311g2	gene5295	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5482	rna5482-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25208.1	cds5468	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:58170..60346+
coding sequence from alignment at CM002466.1:58170..60346+

mRNA sequence

>rna5482 ID=rna5482|Name=rna5482|organism=Nannochloropsis gaditana|type=mRNA|length=2359bp
GTATTTTCTGCCCACATGCCCGAGAAAGCAGCCACTATCAGTCTGATACT
AACGCGTACTTTTAGGGACTTATATTCTTTCCACGTCTGACTCGTTGAGG
GTGCGATCACCAGACACAGGCATTTTGGTCTAGCCCGAGATGACCCTCCT
CTTACCACCCAACGCCACACTCCACCGGAAGCTTCAACATGTTAAGCCGG
ACAATGGGCACCCTGAGCACCAACAGAGCACACCATACGGCCATTTTGGC
ATAAGAATCACAAAGGCCGACAGTGCAGCGATAAATAGCACCCAGCCCAT
TGTGCTGACTCCACTATTCCCCTTTGTGTGGGCATGCGAGGTCGGACAGT
CCCAGGTGCATCGTCTCCTGTCTTACTTGCCTACAGCATCCTTTCCCTCT
ACTATCAACGACGCAAGGATAAATGTACTTACGCATGATAATCCTACTTC
CTCGCCTGGCTTTCTGGCTCCTTCTTGCAGTTTTGGGGCCGTGCCCGCGT
CAAATGCAGGCTCCATGCCTTCCTCCCCTCCCGACCTCGCCCCTATCCCC
CGAACCAACCTCAGAAAGAGCAATAGAATAGAGCAATCTACCCCCCCCCT
GGCTGGATGCATCGCGGATCGGTCACACCGACATGCCAGCTGCCTGTTGG
GCGCCAATTATAGACTCGACGACCCAGCCCTCATTCCCCTTGTGCACCGT
CGATACATTACTCGATTCTTCTACGTACCTTATGCCTGTCGGGACATGGG
GTGGGTGGCTTTCAGTCCAGAGTTGCGTCAGGCGTTGAAGACGGCCAGGT
CCAGCCTTTCTCGATCGTTTTGCCTGAAGATCTCCGCGTTCCCCAAGAAC
ATGGAGGTAGCCATCGGAGAAATCCTCTTGACAGCTCCAGTCGCCCAAGG
CTGTCGGTTGGAGGAAAAAGAGCTTTCTCCCTCCGCCTCTCAGGCGTCGC
ATGTGTTGCACGTGGTTCATTCCCCTGAATGGAGCCCCCTCTTCTACTAC
GGCCTCACACAGAGCCATTCCCTCACCGGCCCTACTTCCGCCCCTCCTCC
ATCCTTCCTTTCCTTCCTCCCTCCTTCCTTCGAAAAACCACCCTCCTCCT
CCTCCTTGCCCCCCGTCTCCCGGGCATATTTTAAAATGCGGGAAATATGG
GAGGAGCGGTTGGAGGAAGGGATGGAGGGCGGGATGGAGGAAGAAATGTG
GAAGAAGGACAGGAAAGCCTTGGACGTCGGGGCTTCGCCGGGGGGGTGGA
CGCAATACCTCAGGTACAATTCAAGAGGGAGGGGAGGGAGAGAGAAGTTA
AGGAGGAACAGAGGATTGTAGTGGATACAGAGCCATGGTCCTCTAGGACG
AAGTGTCTCGTCGTCCTTCCTTCTTCCTAATCCTCCCCTTCCTCCCTCCT
GGCCTCCCAAATTCCCACTTCCCTGCCCAGTGATAAACTGTCTCAGGTCG
TCGCTGTGGACGGGGCGAGCCTTCATCCTTCCCTCCTCCCCTCCCTCTCC
AATGTCCGCCACGTCCCGTACCGGATCCAAGCGGAGGAAGCGACGGAGGT
CTTGAAGGAGGAAGGGCCCTTCCATTTGGTCTGTGTGGACATCAACCTCT
TCCCGCAGGGGGCGGCGGATCTCATCCTTCAACATGTCTTCCCGCACGTG
GCCCACCACGCCCTCGTAATTCTCACTCTGAAGTTTCCACGGAAGCCCAC
TGGTGCACGGTAGGCCTCTGCGTCCTCCTTCTTCCCTTCCCCCCTCCCTC
CTCCCCTTTCACTTTCCTCCCTCCTTCCCTCTTTTCTCCCTTTTGCTTTT
TCAGCCCTCCCCATTTCTTTTCTCCGAGCTTCGCTACGATTTTTCCTTTC
CTCCGAGCTTCGCTACGATTTTTTCACACTCTATGGGATACTATTTCCTT
TCTTATTTGTTTTCTTTGTGCCTACGTGGGTGTTGGAATGTCTTCCATAC
AGTCTCCAGAAAGCGCTGCGCGACCTAGAACGCATATGGGCCGAGGACCC
TGAAATTTACTGCCGTTCGAGTAGAAAGAGAGAAGAAGGGCACCGGGACG
ACGAAGATAAATCAGAAGTACTTCGGTTACTGTGGCTTCATGCAAATTCG
TCGCATGAACGGACGGTTATCACCTGGGTGCATCGCCGAAAATCGAGGCC
TCCTGTATGAGCACTCATAGGATTTTCAGAAATGTGTAAAGGCAATTTTG
ATGAGACGCGAAATTGTAACACTCCCTCCAGGATGATATTCAAATAAGCG
AAAATTCTTTCATTAAATGTTGGATCCTATATGAAGGCTTCGTGATTTTA
TTTCCGCGTGTTGTTTTTGGTAAGCAACGTAATGCAAAATTCACACGGGG
GGCAGCATT

protein sequence of rna5482

>rna5482-protein ID=rna5482-protein|Name=rna5482|organism=Nannochloropsis gaditana|type=polypeptide|length=688bp
MGPHPGWDSASTSPPLSVGIGWSICLGFGAVFSLFTTLLVWLEGRYSGTK
QSSEHFNTAGRTVKTGLIAAVVCSQWTWAATLLQSSNVAWLYGVSGPFWY
GAGAAVQILLFGILSIEIKRKAPHAHTVCEIIRARWGPTAHKVFLSFCLL
TNMLVTSMLLLGGAATIEAMTGLNVYVAAFLIPLGIIVYTFADGLAATFL
SNYLHTIILHAVLLVFIVAVYLYPLPGGRSQLGSVSQVYDRLLRLNTYTV
EECAARNFLDDTGSVAGCGPVPGNKAGSSLTMFSQGGIMFAVINLVGNFG
TVFVDQAYWQAAIAARPSAAVRGYLLGGLAWFAIPFALATSLGLASLALE
LPLTAAQANAGLVPVASAVELLGTGGGVLMLLMVFMAVTSCGSAELIAVS
SLLTYDVYKTYLRPGASGAELLKVSRWCVVVFGLTMGGLAALLEIAGLAL
GYLYLLMGVLVGSAVFPIATSLLWRKTSAHGAMAGAVGGMLIALAAWLGT
AAAFAEKGGPLLTLETTGASVPMLVGNVTALLVSMGVTSGHSLLWPEDCD
WSTTRTLQEIGSVADTQAGEVAPREGEEVAPRLQAETEGEMAVEMDPKRL
RAAKTFVLKWGCFFSLLMLVLWPLLSLPAGAPFSFSYFSLWVWVGIIWGF
LSSIIITAMPLRERGGENTVTEAPTAQVTPGALVLIQQ

mRNA from alignment at CM002466.1:58170..60346+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5482 ID=rna5482|Name=rna5482|organism=Nannochloropsis gaditana|type=mRNA|length=2177bp|location=Sequence derived from alignment at CM002466.1:58170..60346+ (Nannochloropsis gaditana)
ATGGGACCTCATCCTGGGTGGGATAGTGCCAgcacctctcccccgctctc
AGTCGGCATCGGCTGGTCTATATGCCTGGGCTTTGGTGCCGTTTTCAGTC
TATTTACGACCCTCCTGGTGTGGCTTGAAGGACGCTACAGTGGGACGAAA
CAATCCAGCGAACATTTCAAcacggcgggaaggacggtCAAAACGGGCCT
GATTGCTGCTGTGGTTTGTTCTCAATGGACATGGGCGGcgaccctcctcc
agagcaGTAATGTGGCGTGGTTATACGGCGTCTCGGGACCTTTCTGGTAC
GGAGCTGGGGCTGCGGTCCAAATCCTCCTGTTCGGCATCCTTTCGATTGA
AATCAAGCGGAAAGCCCCCCATGCGCACACGGTCTGTGAGATCATCCGGG
CACGGTGGGGCCCGACGGCCCATAAAGTGTTTCTAAGCTTTTGTCTCCTG
ACGAACATGCTGGTcacctccatgctcctctTGGGAGGCGCCGCGACGAT
CGAAGCCATGACCGGGCTCAACGTCTACGTGGCTGCGTTTTTGATTCCGT
TGGGCATCATTGTCTATACCTTCGCGGACGGTCTCGCCGCGACGTTTCTC
TCCAATTACCTCCACACCATCATCCTCCACGCagtccttctcgtcttcat
cGTCGCCGTCTACCTGTACCCGCTTCCAGGGGGACGGAGCCAGCTCGGCT
CTGTCTCCCAAGTCTACGACCGCCTGCTTCGTCTCAACACGTACACGGTG
GAGGAATGTGCGGCGAGAAATTTCCTGGACGACACGGGCTCCGTCGCAGG
CTGTGGGCCCGTGCCCGGCAACAAAGCCGGGAGCTCCTTGACCATGTTCA
GCCAGGGGGGGATCATGTTCGCGGTCATCAATTTGGTGGGGAACTTCGGT
ACCGTCTTTGTCGACCAAGCCTATTGGCAAGCAGCCATTGCCGCCCGCCC
CAGCGCGGCCGTGCGGGGGTACCTCTTGGGGGGATTGGCCTGGTTTGCCA
TCCCTTTTGCACTGGCCACCTCCTTAGGTCTAGCTTCGTTGGCCCTTGAA
CTCCCCTTAACGGCCGCCCAGGCGAACGCCGGCTTGGTCCCTGTGGCCTC
GGCGGTCGAACTCttgggcacgggggggggggtgttGATGCTGTTAATGG
TCTTTATGGCCGTCACCTCGTGCGGTTCAGCCGAGCTGATcgcggtctcc
tccctcttgactTACGACGTGTACAAAACCTACCTCCGACCGGGCGCGAG
TGGGGCGGAGCTCCTGAAAGTCTCCCGGTGGTGTGTGGTCGTCTTTGGCT
TGACCATGGGCGGCTTAGCTGCCCTGTTGGAGATCGCCGGGCTCGCCCTC
GGCTATCTTTACCTCCTGATGGGCGTCCTGGTCGGTTCTGCCGTCTTTCC
CATCGCCACCTCGTTGCTTTGGAGGAAGACCTCGGCGCATGGCGCCATGG
CGGGGGCCGTCGGGGGAATGCTCATCGCCCTTGCTGCCTGGTTGGGCACT
GCCGCGGCGTTcgcggagaagggagggccgtTGTTGACCCTGGAGACGAC
GGGAGCTTCGGTCCCCATGTTGGTTGGCAATGTGACGGCGCTCCTGGTCT
CTATGGGGGTCACCAGTGGGCACAGCCTGCTTTGGCCGGAGGATTGCGAC
TGGTCAACTACCCGGACTTTGCAGGAGATCGGGAGTGTGGCCGAcacgca
ggcgggggaggtggccccgagggagggagaggaggtggcacCCCGGTTGC
AAGCGGAaacggagggggaaatggcAGTAGAGATGGACCCAAAACGATTG
CGGGCCGCCAAGACCTTCGTGTTGAAGTGGGgttgcttcttctccctgct
tATGCTGGTCCTGTggcccttgctctccctccctgcgggGGCGCCCTTTT
CGTTCTCTTACTTCAGTCTTTGGGTCTGGGTGGGGATTATCTGGGGGTTT
CTATCCTCCATAATCATCACGGCGATGCCCCTGCGCGAAAGTAAGGCGGC
CATCGAGCAGGTGCTGGTGGGAATATGGGCCGATTTGAGAAGGgtcggga
agggaaaggggggggggaatggaggagaaaaggtggaaatgaaagagaag
gaggaggcgaaaacACGGTGACGGAGGCTCCCACTGCACAGGTGACGCCT
GGCGCATTGGTGTTGATTCAGCAGTAG

Coding sequence (CDS) from alignment at CM002466.1:58170..60346+

>rna5482 ID=rna5482|Name=rna5482|organism=Nannochloropsis gaditana|type=CDS|length=4134bp|location=Sequence derived from alignment at CM002466.1:58170..60346+ (Nannochloropsis gaditana)
ATGGGACCTCATCCTGGGTGGGATAGTGCCAgcacctctcccccgctctc
AGTCGGCATCGGCTGGTCTATATGCCTGGGCTTTGGTGCCGTTTTCAGTC
TATTTACGACCCTCCTGGTGTGGCTTGAAGGACGCTACAGTGGGACGAAA
CAATCCAGCGAACATTTCAAcacggcgggaaggacggtCAAAACGGGCCT
GATTGCTGCTGTGGTTTGTTCTCAATGGACATGGGCGGcgaccctcctcc
agagcaGTAATGTGGCGTGGTTATACGGCGTCTCGGGACCTTTCTGGTAC
GGAGCTGGGGCTGCGGTCCAAATCCTCCTGTTCGGCATCCTTTCGATTGA
AATCAAGCGGAAAGCCCCCCATGCGCACACGGTCTGTGAGATCATCCGGG
CACGGTGGGGCCCGACGGCCCATAAAGTGTTTCTAAGCTTTTGTCTCCTG
ACGAACATGCTGGTcacctccatgctcctctTGGGAGGCGCCGCGACGAT
CGAAGCCATGACCGGGCTCAACGTCTACGTGGCTGCGTTTTTGATTCCGT
TGGGCATCATTGTCTATACCTTCGCGGACGGTCTCGCCGCGACGTTTCTC
TCCAATTACCTCCACACCATCATCCTCCACGCagtccttctcgtcttcat
cGTCGCCGTCTACCTGTACCCGCTTCCAGGGGGACGGAGCCAGCTCGGCT
CTGTCTCCCAAGTCTACGACCGCCTGCTTCGTCTCAACACGTACACGGTG
GAGGAATGTGCGGCGAGAAATTTCCTGGACGACACGGGCTCCGTCGCAGG
CTGTGGGCCCGTGCCCGGCAACAAAGCCGGGAGCTCCTTGACCATGTTCA
GCCAGGGGGGGATCATGTTCGCGGTCATCAATTTGGTGGGGAACTTCGGT
ACCGTCTTTGTCGACCAAGCCTATTGGCAAGCAGCCATTGCCGCCCGCCC
CAGCGCGGCCGTGCGGGGGTACCTCTTGGGGGGATTGGCCTGGTTTGCCA
TCCCTTTTGCACTGGCCACCTCCTTAGGTCTAGCTTCGTTGGCCCTTGAA
CTCCCCTTAACGGCCGCCCAGGCGAACGCCGGCTTGGTCCCTGTGGCCTC
GGCGGTCGAACTCttgggcacgggggggggggtgttGATGCTGTTAATGG
TCTTTATGGCCGTCACCTCGTGCGGTTCAGCCGAGCTGATcgcggtctcc
tccctcttgactTACGACGTGTACAAAACCTACCTCCGACCGGGCGCGAG
TGGGGCGGAGCTCCTGAAAGTCTCCCGGTGGTGTGTGGTCGTCTTTGGCT
TGACCATGGGCGGCTTAGCTGCCCTGTTGGAGATCGCCGGGCTCGCCCTC
GGCTATCTTTACCTCCTGATGGGCGTCCTGGTCGGTTCTGCCGTCTTTCC
CATCGCCACCTCGTTGCTTTGGAGGAAGACCTCGGCGCATGGCGCCATGG
CGGGGGCCGTCGGGGGAATGCTCATCGCCCTTGCTGCCTGGTTGGGCACT
GCCGCGGCGTTcgcggagaagggagggccgtTGTTGACCCTGGAGACGAC
GGGAGCTTCGGTCCCCATGTTGGTTGGCAATGTGACGGCGCTCCTGGTCT
CTATGGGGGTCACCAGTGGGCACAGCCTGCTTTGGCCGGAGGATTGCGAC
TGGTCAACTACCCGGACTTTGCAGGAGATCGGGAGTGTGGCCGAcacgca
ggcgggggaggtggccccgagggagggagaggaggtggcacCCCGGTTGC
AAGCGGAaacggagggggaaatggcAGTAGAGATGGACCCAAAACGATTG
CGGGCCGCCAAGACCTTCGTGTTGAAGTGGGgttgcttcttctccctgct
tATGCTGGTCCTGTggcccttgctctccctccctgcgggGGCGCCCTTTT
CGTTCTCTTACTTCAGTCTTTGGGTCTGGGTGGGGATTATCTGGGGGTTT
CTATCCTCCATAATCATCACGGCGATGCCCCTGCGCGAAAgaggaggcga
aaacACGGTGACGGAGGCTCCCACTGCACAGGTGACGCCTGGCGCATTGG
TGTTGATTCAGCAGTAGATGGGACCTCATCCTGGGTGGGATAGTGCCAgc
acctctcccccgctctcAGTCGGCATCGGCTGGTCTATATGCCTGGGCTT
TGGTGCCGTTTTCAGTCTATTTACGACCCTCCTGGTGTGGCTTGAAGGAC
GCTACAGTGGGACGAAACAATCCAGCGAACATTTCAAcacggcgggaagg
acggtCAAAACGGGCCTGATTGCTGCTGTGGTTTGTTCTCAATGGACATG
GGCGGcgaccctcctccagagcaGTAATGTGGCGTGGTTATACGGCGTCT
CGGGACCTTTCTGGTACGGAGCTGGGGCTGCGGTCCAAATCCTCCTGTTC
GGCATCCTTTCGATTGAAATCAAGCGGAAAGCCCCCCATGCGCACACGGT
CTGTGAGATCATCCGGGCACGGTGGGGCCCGACGGCCCATAAAGTGTTTC
TAAGCTTTTGTCTCCTGACGAACATGCTGGTcacctccatgctcctctTG
GGAGGCGCCGCGACGATCGAAGCCATGACCGGGCTCAACGTCTACGTGGC
TGCGTTTTTGATTCCGTTGGGCATCATTGTCTATACCTTCGCGGACGGTC
TCGCCGCGACGTTTCTCTCCAATTACCTCCACACCATCATCCTCCACGCa
gtccttctcgtcttcatcGTCGCCGTCTACCTGTACCCGCTTCCAGGGGG
ACGGAGCCAGCTCGGCTCTGTCTCCCAAGTCTACGACCGCCTGCTTCGTC
TCAACACGTACACGGTGGAGGAATGTGCGGCGAGAAATTTCCTGGACGAC
ACGGGCTCCGTCGCAGGCTGTGGGCCCGTGCCCGGCAACAAAGCCGGGAG
CTCCTTGACCATGTTCAGCCAGGGGGGGATCATGTTCGCGGTCATCAATT
TGGTGGGGAACTTCGGTACCGTCTTTGTCGACCAAGCCTATTGGCAAGCA
GCCATTGCCGCCCGCCCCAGCGCGGCCGTGCGGGGGTACCTCTTGGGGGG
ATTGGCCTGGTTTGCCATCCCTTTTGCACTGGCCACCTCCTTAGGTCTAG
CTTCGTTGGCCCTTGAACTCCCCTTAACGGCCGCCCAGGCGAACGCCGGC
TTGGTCCCTGTGGCCTCGGCGGTCGAACTCttgggcacgggggggggggt
gttGATGCTGTTAATGGTCTTTATGGCCGTCACCTCGTGCGGTTCAGCCG
AGCTGATcgcggtctcctccctcttgactTACGACGTGTACAAAACCTAC
CTCCGACCGGGCGCGAGTGGGGCGGAGCTCCTGAAAGTCTCCCGGTGGTG
TGTGGTCGTCTTTGGCTTGACCATGGGCGGCTTAGCTGCCCTGTTGGAGA
TCGCCGGGCTCGCCCTCGGCTATCTTTACCTCCTGATGGGCGTCCTGGTC
GGTTCTGCCGTCTTTCCCATCGCCACCTCGTTGCTTTGGAGGAAGACCTC
GGCGCATGGCGCCATGGCGGGGGCCGTCGGGGGAATGCTCATCGCCCTTG
CTGCCTGGTTGGGCACTGCCGCGGCGTTcgcggagaagggagggccgtTG
TTGACCCTGGAGACGACGGGAGCTTCGGTCCCCATGTTGGTTGGCAATGT
GACGGCGCTCCTGGTCTCTATGGGGGTCACCAGTGGGCACAGCCTGCTTT
GGCCGGAGGATTGCGACTGGTCAACTACCCGGACTTTGCAGGAGATCGGG
AGTGTGGCCGAcacgcaggcgggggaggtggccccgagggagggagagga
ggtggcacCCCGGTTGCAAGCGGAaacggagggggaaatggcAGTAGAGA
TGGACCCAAAACGATTGCGGGCCGCCAAGACCTTCGTGTTGAAGTGGGgt
tgcttcttctccctgcttATGCTGGTCCTGTggcccttgctctccctccc
tgcgggGGCGCCCTTTTCGTTCTCTTACTTCAGTCTTTGGGTCTGGGTGG
GGATTATCTGGGGGTTTCTATCCTCCATAATCATCACGGCGATGCCCCTG
CGCGAAAgaggaggcgaaaacACGGTGACGGAGGCTCCCACTGCACAGGT
GACGCCTGGCGCATTGGTGTTGATTCAGCAGTAG

Synonyms

Publications