rna548, rna548 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna548
Unique Name	rna548
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1560
Alignment location	CM002455.1:1369565..1371655 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100541g4.961.mrna
Orig protein id	gnl\|cribi\|Naga_100541g4.961
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1369565..1371655 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100541g4	gene529	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna548	rna548-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30124.1	cds548	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1369565..1371655+
coding sequence from alignment at CM002455.1:1369565..1371655+

mRNA sequence

>rna548 ID=rna548|Name=rna548|organism=Nannochloropsis gaditana|type=mRNA|length=1560bp
ATGTACAGCGAGGAGATTGAAGAGGGCGTCCGGCGTTCCGTCTGTCGTGC
AAGACCAGCCTCGTATCCTCGTCCGGCACGGGGCGTGGGGCTCATAACTG
TCATCGCATGCATCTCTTTCTTTTCCTTGGGGGGCTTGGTCGGAGTGACG
GGGCCCGCCATTCCAAGCCTCACCGTCCACCTGGGGTGCCGCGACGAAAC
TCAACTTGGTAGCGCCTTCACATGTCGCGGAGCCGGCTATTTGACGGGGG
CCGTGCTGGCGTCGGTGCTCGACACCCGATGTTCGAAGGGAAAACACCTG
GTGGTGGTGATGGGAAGCCTCTTGGCAGGCTTGGCGACCTTGGGGATCGT
CTGGACGCACGTGTTTTCGGGGTTTCTGGTCCTGATGGTGTTGCAAGGCT
TGGGTCTGGGGTGTGTGGATACGGCCGCAAATGCGGTGGTGCTCGAGCTG
TGGGGGGGCAGCCCACACGTGGAACCGCTCATGCAAGCTATGCACGCCTG
CTTTGGGATCGGTGCGGTGGCTTCTCCTGCCGCAGTGGGTGCCTTGGGTT
ACGTGCTGGCCTTCCGACTCTGGGCAAGCATCGCGCTCCTCCCTCTCTTC
CTGTGGGCCGGCGGCCTGATGATGGCGGGGACGGGAAGGACAGGCGACGG
CGAAGTGTTGTGGGGGGAAGCAACCCTCCCGCTGTTGAGGGACGGAGCCC
ATCATAGCGAGGAGGGAAGGGAGGAGGAGCCGGGGAGCTCTAGGAAGGAG
AGGGAGACCCTCCCCAGGCCGTTCCGCGACAGGGAGGCAGGTCTCGGGAG
ACCCACATCTGTACCCAGCACGGTCCTCGCACATGCCCAAGCGGCCTCCC
CCAAGCCCTCCATTGCCCCGCCGGCGTCCTCCCCCCTTGCCTCCTTGCCC
AAGAGCCTCCAGGCGGGCGTGTCGTTCTTTCTGCTCATCTACGTCGGCAT
TGAAGTTGGGTACGGGGGCTGGATCGCCACCGTCCTCCTCCGTCAGGGGC
TCACCCAGTCTTTACCCGTCGCTTCCTACTCCGTCTCCATGTTTTGGGGC
GCCATCACCCTCGGTCGTCTCCTTGCCATCCCTCTGGCCACCTGCCTCCC
CCCCGTCCCGTCCCTCCTCCTCCAGCTCGGCCTCAGCACCCTGGGAGCCA
TCTGTCTCCTCACCTTCGCCTTCCAAACCTTGTGGACCGCCGCCGTGGCC
AGCGTCGTCTTCGGTTTGGGTCTCTCCTCCATTTTTCCCACCGTGATGCT
CCTCCCAGAAGCCCTAGGGTACCAGGTGACCATGTGGAGCACCAGCACCT
TCCTGGTCGGGGCCTGCCTGGGGGAGGGAATCATCCCCATGGGCATAGGC
TGGTTGATGGGGTCGAAAGGCATTGGGACTGGGAGTTTTGCCTGGGCCAT
GGCGGCGGCTTGTCTGGCCTTGTGGGTTTTGGCCGGGTGCTTCTTCTCGA
GGTGGCGCGTACGTGCGGGGACAGGGTGCCCTCCTGGCAGAGGGGGGGGA
GAAGGGGGGGGACAGGCGCGGATGGGGGAGGATATAGAGACAGTGCCGGG
CCCTGCTTAG

protein sequence of rna548

>rna548-protein ID=rna548-protein|Name=rna548|organism=Nannochloropsis gaditana|type=polypeptide|length=305bp
MREVCSLRAYQSTYKAHREDARINQPGTWWLRCSISPPAHHLWTEISEQV
DLPLPAPDPDPGFWENKEEKYERGSMRDDTLLAEDMQEQIRAMQEVVRKL
EFEIQETMEDLEFQTAAAEARRLRADQAVATLHKDQKQMVSAGKKHAALI
VKWWLWGLLLGWLLAIIVSALVSPVLAFMVVIPILAIFLTVGYASSSVEM
KVSASSDQLLHNIISLDAGKSLASMGPLSGFHRPWRLLSTRPSTRWAGIY
QDSERTLNLRRFGPNATHAMVSTVNGQLFVKVGTHLMRASRGSLTRSGAS
ALPSP

mRNA from alignment at CM002455.1:1369565..1371655+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna548 ID=rna548|Name=rna548|organism=Nannochloropsis gaditana|type=mRNA|length=2091bp|location=Sequence derived from alignment at CM002455.1:1369565..1371655+ (Nannochloropsis gaditana)
ATGAGAGAAGTTTGCAGTTTGCGAGCGTACCAAAGTACGTATAAGGCACA
CCGCGAGGATGCGAGGATAAATCAACCGGGAACCTGGTGGCTGCGATGTA
gtatttcccctcccgcgcaccatttgtggaccgaaatCAGCGAGCAAGtc
gacctccccctgcctgcccctgACCCTGACCCGGGCTTTTGGGAAAATAA
AGAAGAGAAATATGTCATGCGGAGGAAATCTTTCTTGTGTCTGAGATTTT
TGTTCGGGCTACACTTCGTTATCAGTTCTCGACATGTCGAGGGCGCTTTT
CTACGCTTATTTGACTTGCCCCTTTTGCCTTTGTGTCGTGCCAGTGTTTT
CTTGCTCTCTCTGCAACTTGTCATCTACCATACCATGATCTCTTTACGGA
ATAAAAAAGATTTGGAAAGATTGCTTGTGATAGAAGGCGAAAGCAAGGTC
GTATGACCTGCCAATAAAACAGGTTTCATGGTCATATTCCTGATTTAAGT
CGACGCAACAGTCATGCCGTTTCCCTCCAGTATGCCGCCGTTGGTTCTAA
TTTTTTCTACCTGTTCCAACACACATTGTCTACGCCGTCACTCAGGAGCG
TGGCAGCATGCGTGACGATACACTCCTTGCGGAAGACATGCAAGAGCAAA
TTCGGGCCATGCAGGAGGTCGTGCGCAAGGTATGTTGTCCTGCTCTTCGG
AAACTTCCCTTTACCCGGACCACTCTCAATCCCTCTTTTGTTCCTGTCTC
TGCACCCGGATGTCTGCGCATGACTCCCTGCCTTTCAACAGCTGGAATTT
GAGATACAAGAAACCATGGAAGACTTGGAATTTCAGACGGCAGCAGCGGA
GGCGCGGCGCTTGCGGGCCGACCAGGCTGTCGCCACGTTGCACAAAGACC
AGAAACAAATGGTCTCGGCGGGGAAAAAACACGCGGCGTTGATCGTGAAG
TGGTGGCTGTGGGGGCTGCTGCTCGGGTGGCTGCTCGCCATCATTGTCTC
CGCCCTCGTCTCTCCTGTCTTGGCCTTCATGGTGGTCATCCCCATCCTTG
CCATCTTCCTGACCGTGGGCTACGCGTCCTCCAGCGTGGAGatgaaggta
gggagggaggcagggagggaaggcggagggtgtCTCTTTGCAGGACGGGA
CTCTTGGGTGGCGCCGAGCCAAAGCTTCGGGGGGTTGGTTGAACCCTCTC
TAGACAGGCCCACACCCAATTTTaatccattttttttccacgaccgttct
tcccccttgcGATGACCCGCTTGTTGTCGACCTCTATGTGGCTGggatcc
ttcccttctctccctgcccgcccagCGGCGTTTCTGACCCTGCATGcccc
ctcttgtcctcctctaACCTCCCCTGGACCTGCTTTCGTCTCCTGCGCGC
AGGTCGACATTGCCAACGTCAAGAAGGAAgcgcggcggcggggccGCTCG
GACCCACAGGCCccggaggtggagacggaggaatTCATCGAGACCATCCT
GGACGGGGCAGGGCATGCCTCTCGTCGCAATGGGGGGGGTCCACACACCC
GGGGAGGCAgcacgggggggcagggtgtaggaggaagggggggaggaacg
gcaggaaaggggggaattGTAACGTCAAGCGTCGCGGCGATCGGTGGGGC
CGTCGGGTGGTTGTTTGGGTAcggcgggaagaaaagagagtgaGCGAGAA
CGTCGAGAGCCGCGCGCGTCATCGTTCAAGGCGGGTTAGTTCTTGAGGAT
GGTCCGACCGGAGCACGAGTCTTAAGGTGTCTGCAAGCTCAGATCAGCTC
CTTCATAACATAATTTCGTTGGACGCCGGGAAGTCTTTGGCCTCGATGGG
TCCACTAAGCGGCTTCCACCGGCCGTGGCGCCTCCTGTCGACCCGGCCCT
CGACAAGATGGGCAGGAATCTACCAAGATTCGGAGCGCACACTGAACCTC
AGAAGATTCGGGCCTAATGCAACACATGCCATGGTCTCGACCGTCAACGG
CCAATTGTTTGTAAAGGTGGGAACCCATCTGATGCGGGCGTCGCGGGGAT
CCCTGACGAGAAGCGGCGCGTCTGCCTTGCCTTCACCTTAA

Coding sequence (CDS) from alignment at CM002455.1:1369565..1371655+

>rna548 ID=rna548|Name=rna548|organism=Nannochloropsis gaditana|type=CDS|length=3672bp|location=Sequence derived from alignment at CM002455.1:1369565..1371655+ (Nannochloropsis gaditana)
ATGAGAGAAGTTTGCAGTTTGCGAGCGTACCAAAGTACGTATAAGGCACA
CCGCGAGGATGCGAGGATAAATCAACCGGGAACCTGGTGGCTGCGATGTA
gtatttcccctcccgcgcaccatttgtggaccgaaatCAGCGAGCAAGtc
gacctccccctgcctgcccctgACCCTGACCCGGGCTTTTGGGAAAATAA
AGAAGAGAAATATGAGCGTGGCAGCATGCGTGACGATACACTCCTTGCGG
AAGACATGCAAGAGCAAATTCGGGCCATGCAGGAGGTCGTGCGCAAGCTG
GAATTTGAGATACAAGAAACCATGGAAGACTTGGAATTTCAGACGGCAGC
AGCGGAGGCGCGGCGCTTGCGGGCCGACCAGGCTGTCGCCACGTTGCACA
AAGACCAGAAACAAATGGTCTCGGCGGGGAAAAAACACGCGGCGTTGATC
GTGAAGTGGTGGCTGTGGGGGCTGCTGCTCGGGTGGCTGCTCGCCATCAT
TGTCTCCGCCCTCGTCTCTCCTGTCTTGGCCTTCATGGTGGTCATCCCCA
TCCTTGCCATCTTCCTGACCGTGGGCTACGCGTCCTCCAGCGTGGAGatg
aagGTGTCTGCAAGCTCAGATCAGCTCCTTCATAACATAATTTCGTTGGA
CGCCGGGAAGTCTTTGGCCTCGATGGGTCCACTAAGCGGCTTCCACCGGC
CGTGGCGCCTCCTGTCGACCCGGCCCTCGACAAGATGGGCAGGAATCTAC
CAAGATTCGGAGCGCACACTGAACCTCAGAAGATTCGGGCCTAATGCAAC
ACATGCCATGGTCTCGACCGTCAACGGCCAATTGTTTGTAAAGGTGGGAA
CCCATCTGATGCGGGCGTCGCGGGGATCCCTGACGAGAAGCGGCGCGTCT
GCCTTGCCTTCACCTTAAATGAGAGAAGTTTGCAGTTTGCGAGCGTACCA
AAGTACGTATAAGGCACACCGCGAGGATGCGAGGATAAATCAACCGGGAA
CCTGGTGGCTGCGATGTAgtatttcccctcccgcgcaccatttgtggacc
gaaatCAGCGAGCAAGtcgacctccccctgcctgcccctgACCCTGACCC
GGGCTTTTGGGAAAATAAAGAAGAGAAATATGAGCGTGGCAGCATGCGTG
ACGATACACTCCTTGCGGAAGACATGCAAGAGCAAATTCGGGCCATGCAG
GAGGTCGTGCGCAAGCTGGAATTTGAGATACAAGAAACCATGGAAGACTT
GGAATTTCAGACGGCAGCAGCGGAGGCGCGGCGCTTGCGGGCCGACCAGG
CTGTCGCCACGTTGCACAAAGACCAGAAACAAATGGTCTCGGCGGGGAAA
AAACACGCGGCGTTGATCGTGAAGTGGTGGCTGTGGGGGCTGCTGCTCGG
GTGGCTGCTCGCCATCATTGTCTCCGCCCTCGTCTCTCCTGTCTTGGCCT
TCATGGTGGTCATCCCCATCCTTGCCATCTTCCTGACCGTGGGCTACGCG
TCCTCCAGCGTGGAGatgaagGTGTCTGCAAGCTCAGATCAGCTCCTTCA
TAACATAATTTCGTTGGACGCCGGGAAGTCTTTGGCCTCGATGGGTCCAC
TAAGCGGCTTCCACCGGCCGTGGCGCCTCCTGTCGACCCGGCCCTCGACA
AGATGGGCAGGAATCTACCAAGATTCGGAGCGCACACTGAACCTCAGAAG
ATTCGGGCCTAATGCAACACATGCCATGGTCTCGACCGTCAACGGCCAAT
TGTTTGTAAAGGTGGGAACCCATCTGATGCGGGCGTCGCGGGGATCCCTG
ACGAGAAGCGGCGCGTCTGCCTTGCCTTCACCTTAAATGAGAGAAGTTTG
CAGTTTGCGAGCGTACCAAAGTACGTATAAGGCACACCGCGAGGATGCGA
GGATAAATCAACCGGGAACCTGGTGGCTGCGATGTAgtatttcccctccc
gcgcaccatttgtggaccgaaatCAGCGAGCAAGtcgacctccccctgcc
tgcccctgACCCTGACCCGGGCTTTTGGGAAAATAAAGAAGAGAAATATG
AGCGTGGCAGCATGCGTGACGATACACTCCTTGCGGAAGACATGCAAGAG
CAAATTCGGGCCATGCAGGAGGTCGTGCGCAAGCTGGAATTTGAGATACA
AGAAACCATGGAAGACTTGGAATTTCAGACGGCAGCAGCGGAGGCGCGGC
GCTTGCGGGCCGACCAGGCTGTCGCCACGTTGCACAAAGACCAGAAACAA
ATGGTCTCGGCGGGGAAAAAACACGCGGCGTTGATCGTGAAGTGGTGGCT
GTGGGGGCTGCTGCTCGGGTGGCTGCTCGCCATCATTGTCTCCGCCCTCG
TCTCTCCTGTCTTGGCCTTCATGGTGGTCATCCCCATCCTTGCCATCTTC
CTGACCGTGGGCTACGCGTCCTCCAGCGTGGAGatgaagGTGTCTGCAAG
CTCAGATCAGCTCCTTCATAACATAATTTCGTTGGACGCCGGGAAGTCTT
TGGCCTCGATGGGTCCACTAAGCGGCTTCCACCGGCCGTGGCGCCTCCTG
TCGACCCGGCCCTCGACAAGATGGGCAGGAATCTACCAAGATTCGGAGCG
CACACTGAACCTCAGAAGATTCGGGCCTAATGCAACACATGCCATGGTCT
CGACCGTCAACGGCCAATTGTTTGTAAAGGTGGGAACCCATCTGATGCGG
GCGTCGCGGGGATCCCTGACGAGAAGCGGCGCGTCTGCCTTGCCTTCACC
TTAAATGAGAGAAGTTTGCAGTTTGCGAGCGTACCAAAGTACGTATAAGG
CACACCGCGAGGATGCGAGGATAAATCAACCGGGAACCTGGTGGCTGCGA
TGTAgtatttcccctcccgcgcaccatttgtggaccgaaatCAGCGAGCA
AGtcgacctccccctgcctgcccctgACCCTGACCCGGGCTTTTGGGAAA
ATAAAGAAGAGAAATATGAGCGTGGCAGCATGCGTGACGATACACTCCTT
GCGGAAGACATGCAAGAGCAAATTCGGGCCATGCAGGAGGTCGTGCGCAA
GCTGGAATTTGAGATACAAGAAACCATGGAAGACTTGGAATTTCAGACGG
CAGCAGCGGAGGCGCGGCGCTTGCGGGCCGACCAGGCTGTCGCCACGTTG
CACAAAGACCAGAAACAAATGGTCTCGGCGGGGAAAAAACACGCGGCGTT
GATCGTGAAGTGGTGGCTGTGGGGGCTGCTGCTCGGGTGGCTGCTCGCCA
TCATTGTCTCCGCCCTCGTCTCTCCTGTCTTGGCCTTCATGGTGGTCATC
CCCATCCTTGCCATCTTCCTGACCGTGGGCTACGCGTCCTCCAGCGTGGA
GatgaagGTGTCTGCAAGCTCAGATCAGCTCCTTCATAACATAATTTCGT
TGGACGCCGGGAAGTCTTTGGCCTCGATGGGTCCACTAAGCGGCTTCCAC
CGGCCGTGGCGCCTCCTGTCGACCCGGCCCTCGACAAGATGGGCAGGAAT
CTACCAAGATTCGGAGCGCACACTGAACCTCAGAAGATTCGGGCCTAATG
CAACACATGCCATGGTCTCGACCGTCAACGGCCAATTGTTTGTAAAGGTG
GGAACCCATCTGATGCGGGCGTCGCGGGGATCCCTGACGAGAAGCGGCGC
GTCTGCCTTGCCTTCACCTTAA

Synonyms

Publications