rna5479, rna5479 (mRNA) Nannochloropsis gaditana

Overview
Namerna5479
Unique Namerna5479
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2130
Alignment locationCM002466.1:50225..51409 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100311g5.1360.mrna
Orig protein idgnl|cribi|Naga_100311g5.1360
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:50225..51409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100311g5gene5293Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5479rna5479-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25210.1cds5465Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5479 ID=rna5479|Name=rna5479|organism=Nannochloropsis gaditana|type=mRNA|length=2130bp
GATGGACAACTCAAGAAGACGGCTCGAAAGCAGGGGCACATTCAATTACA
TAGCGCGCTTTTCACTTGGCTGACGTGTGAGAGATAGATTGATTTGTCTA
GTGTCTTGTAATACCCTTGTAATCGCCCGTTCTCTTTTTTTAAAGAAACC
TTCTGCTGGCATATCATTCGAAGGATCTGACACACCTGTGCTGCATCATG
CCACTTCCATTACACCTACATGAGCAGGTGCTTGGTTCCTAATATCGACG
GTAAATCACAATGGGAATTCGGACAATCTACCTTTTGCAATGCGTTTTCC
TTCTTGTCCTCCCCTCGATGGGAGGGAAAGCAGTCTTACGTGGTCCAGAG
AGCGTGGTTGCTGACAGCACCACAAACTTGGAAGCGGACCCGCCTACCAT
CATTTCCTATTCCCCAGCCCCACGTTCGTATTTGAGGACAGTTGGATCCC
CTGCTGACGCTGTGAAAATGGCGTTGGCGGCTCAAGCGGCCGCGGAGAAG
CGAATGGTCGATGGGGCCCATTGCAAAATCCAATGGAAATGGACTGTGTC
AAAAGATCAACAGAACTCAACGGATGGGAGCCTGGGTGTGATTATGGTCC
TCGACGAAGCAGGGCGACAAAGCGACGAAGCAACCACTCCTGCTTTCCGT
GAATGGACACCTGGCGCGACCTTTGAGGACGAGATGGAGTTTGCCAACTG
CCCGCATGCCAAAATCCAAGGCTTCCGTATTGTCTTTTATCCGTATCAGG
TCCCCGGTGCAGGTCCTCCAGAGGACGACGACCCACCCACCATTTCCTTT
TCCCACGTGGAAGCGCTGGAGGAATCACCTGTCCTCCACGAGAGCTGGCG
CTGGACGGAAGGAGCAGAAGATCGAGAGATAGGAAAGAAAGGGCCGTTCG
TGGCGTCGATGGAGCGCTATACGGTGGCTTGGATCACAGATTAAAATGGA
GCAGCCTGCCTTGGAGGAGAAAAGAAGGAGAAAGCCTCAAAAGCGTGAAA
ATTAGCTCAGGGAAAGTGAGGAAAAGAGAAGGGAGGGAGGAAAAACTTGA
AGGCGTGTAAGTATGTACATGACAGAGGGTGGAGGACAACAGCAACAACA
GCGACAACAACAACAACAACAACAACAACAACCAAAGCATGAGGCGTGAA
ATTATTGTTGCAGCCATTCTCTGTGTTTCTTTTTGGACGCAATGGGATGG
TAGTCATCGGAACAGGGGGAAATACGAGTACCATCAGAGACAACTTCGGC
TCTGTGCATTTGCCCATTTCTTATTGTAAGAAGAAATGTTAGACCACAAT
TAAGGGCATCAAAATGCATTTACTTCTGGGAAAGAGAGGAGTAAGACACA
AAGTATCGTGTTTTTGGGAGCATAGAACTTTTTGGGGGGACACAACGGAC
TCCCGACACTCTCAGGCTCAAGATAACCAGGTCTTTAAAAAAGCCATATA
ACTCATTAAACCTCGATTTTATCAGTAAGTCAATCAAAAAAATGTAAGAT
AAGAAATGGGGAACAAAATTTATTTTGCAAGAAGAGAAGAAGGAAAAAAG
AGACCCTCACAAGCAGAGAGGGCAGGGACAGGTACTACTCGCGTCACGCA
GACCCCAGAAAGCATCACAAACGAAAGTGATCCAAACATAAGAAAATGAA
TAGCATGGCCAATAACCGGTAGTTTGGCCTGTGTATCCGTCGGCTTTTGT
ATTGTGATGGTCGTGAAAATATTCTCGGAGATGAGGGGAAGTAGGGCAGT
ACTCTAATGCTTCAAAGCACCATGAGAAAAAAGAATTTAAGCCCACGCTG
CCCGGTCCTCTTTCAGCCACGACACTTATCCCTTAATGAGAAGCATGTCT
ACAAACTCTCCTTAGCAATATATTGGTTTGTGTCAAGAGAATACTTATCG
GTCAGTACCCCTCCTACACTCGTAGTACTTGACGTTCGGACATACGTTTG
GAGACTGAAGTATCGCGGCCTTTCAAGAAATTGGCACGCTTCAGACAGGC
TTCTGAAGCAGAGCACAGGGAGATGGACGCACCTCGTGTTGCTTCACTTG
AAATCTAAGGAGTACGGTTGAACCTTTCTCTCCCAAGGACTTCCCACCTC
GTACAATGTCCCTCCTCCCTCCCGCCCTCC
back to top

protein sequence of rna5479

>rna5479-protein ID=rna5479-protein|Name=rna5479|organism=Nannochloropsis gaditana|type=polypeptide|length=86bp
MGKCTEPKLSLMVLVFPPVPMTTIPLRPKRNTENGCNNNFTPHALVVVVV
VVVVVAVVAVVLHPLSCTYLHAFKFFLPPFSFPHFP
back to top

mRNA from alignment at CM002466.1:50225..51409+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5479 ID=rna5479|Name=rna5479|organism=Nannochloropsis gaditana|type=mRNA|length=1185bp|location=Sequence derived from alignment at CM002466.1:50225..51409+ (Nannochloropsis gaditana)
TAGGTTCGAGAAAATAGGGCAATAGTCTCACTTCCAGAGCATCATATGTG
CTTACAGACAACACACATTAAGAAGCATGTGTCTCAGCACCTCTTACCGA
TTTGTTTCTTACCTGAAGCGTGCCAATTTCTTGAAAGGCCGCGATACTTC
AGTCTCCAAACGTATGTCCGAACGTCAAGTACTACGAGTGTAGGAGGGGT
ACTGACCGATAAGTATTCTCTTGACACAAACCAATATATTGCTAAGGAGA
GTTTGTAGACATGCTTCTCATTAAGGGATAAGTGTCGTGGCTGAAAGAGG
ACCGGGCAGCGTGGGCTTAAATTCTTTTTTCTCATGGTGCTTTGAAGCAT
TAGAGTACTGCCCTACTTCCCCTCATCTCCGAGAATATTTTCACGACCAT
CACAATACAAAAGCCGACGGATACACAGGCCAAACTACCGGTTATTGGCC
ATGCTATTCATTTTCTTATGTTTGGATCACTTTCGTTTGTGATGCTTTCT
GGGGTCTGCGTGACGCGAGTAGTACCTGTCCCTGCCCTCTCTGCTTGTGA
GGgtctcttttttccttcttctcttcttgcaAAATAAATTTTGTTCCCCA
TTTCTTATCTTACATTTTTTTGATTGACTTACTGATAAAATCGAGGTTTA
ATGAGTTATATGGCTTTTTTAAAGACCTGGTTATCTTGAGCCTGAGAGTG
TCGGGAGTCCGTTGTGTCCCCCCAAAAAGTTCTATGCTCCCAAAAACACG
ATACTTTGTGTCTTactcctctctttcccagaAGTAAATGCATTTTGATG
CCCTTAATTGTGGTCTAACATTTCTTCTTACAATAAGAAATGGGCAAATG
CACAGAGCCGAAGTTGTCTCTGATGGTACTCGTATTTCCCCCTGTTCCGA
TGACTACCATCCCATTGCGTCCAAAAAGAAACACAGAGAATGGCTGCAAC
AATAATTTCACGCCTCATGCTttggttgttgttgttgttgttgttgttgt
tgtcgctgttgttgctgttgtcctccaccctctgtCATGTACATACTTAC
ACGCCTTCaagtttttcctccctcccttctcttttcctcacTTTCCCTGA
GCTAATTTTCACGCTTTTGaggctttctccttcttttctcctccaaggca
GGCTGCTCCATTTTAATCTGTGATCCAAGCCACCG
back to top

Coding sequence (CDS) from alignment at CM002466.1:50225..51409+

>rna5479 ID=rna5479|Name=rna5479|organism=Nannochloropsis gaditana|type=CDS|length=261bp|location=Sequence derived from alignment at CM002466.1:50225..51409+ (Nannochloropsis gaditana)
ATGGGCAAATGCACAGAGCCGAAGTTGTCTCTGATGGTACTCGTATTTCC
CCCTGTTCCGATGACTACCATCCCATTGCGTCCAAAAAGAAACACAGAGA
ATGGCTGCAACAATAATTTCACGCCTCATGCTttggttgttgttgttgtt
gttgttgttgttgtcgctgttgttgctgttgtcctccaccctctgtCATG
TACATACTTACACGCCTTCaagtttttcctccctcccttctcttttcctc
acTTTCCCTGA
back to top
Synonyms
Publications