rna5477, rna5477 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5477
Unique Name	rna5477
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1240
Alignment location	CM002466.1:49862..52636 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100311g4.1355.mrna
Orig protein id	gnl\|cribi\|Naga_100311g4.1355
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:49862..52636 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100311g4	gene5292	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5477	rna5477-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25205.1	cds5463	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:49862..52636-
coding sequence from alignment at CM002466.1:49862..52636-

mRNA sequence

>rna5477 ID=rna5477|Name=rna5477|organism=Nannochloropsis gaditana|type=mRNA|length=1240bp
CCCTCCCTCCCTCCCACCCTCCCTCCCTCCCTCCCTCCCACCCTCCTTCC
CACCCTTCTTCTCGCCCTCTTTTTCGCCTTCTTCTCCTCTTTTGCTTCCT
TCTATCTGCCAAAAATTCGTGATAGGCGCTATTTCCCGCATCACCTTGGC
AATCCCCTGCTTTTCAATTATCTGTATATATATCACCCCTCCCCCCTTGA
CACTCACCCTCCCTCTCAGGTCATTTTAATTTTCCTCTGCTTATTTGTGT
ATATACTTCCTTCCTGCATAATCACATATATACATGCCATCCCTCCCTCC
TTGACACTCACCCTCCCTTCCAGGCCCGTTTCCTCTTTCTCTGCTTGCTT
GTGTTCTTCCTTCCTGTATGATGTTGATGCAACCTTCGCTCCTGTCCTAT
TCCTCCCCCCTCTTTTCCTTCCCTCCTCATCAGGAGGGGCAGATCCTACC
GTCGTCGATGATCGTGGGAAGACGCCGTTGGACATCTTGCACTGGCAGCG
ATGGAACGACGTGACGGGAGCCGTTACGGCTCAACGGTTGCTGGAGGAGG
CGTTACGGGAGCCGGATCGTGTTCGGATCGTGAGGGCAGGGAGGAAGGCG
AGGGAGGGAGGGGGGAGGAAGGGAGGAAGGGACGGAGGGCGGGAGGGAGA
GAGGGAAGGAGGGAGGGAAGGAGGGGCGCGTGAGGAGTTTGGAGGGGGAG
GGCAGGTACATGGGAGGGAAAGGAAGGTAGATGCACGCATGACGAAAAGG
GCGAGTGGGAGCACAGAGCAGGAGGAAGATGGGGAGGAGGGGGGAGGAAG
ACGTGAACGAGAAAAGGTACGGGCAGTCCTGAAGTTTGTTTTGGACTCCG
AAATGCGGCCGGGGCTCTGTCCGGATTTGTTCGAGGAGTTGATGGAGATG
ACGCAGGTGCGGTGGGCGGAGAGGGTGCGATGTTAGGAAGGAAGGCAATG
CATGAGGGAGGCAGGTTGACAGGGTGGGGAAAAATTGTAGATGTACCAGG
AATAAGATCGGGGTGTGTCTGGTGCCCGATTTACAGCGCTTATCTGTGAG
TCCAAGGGTGGAGACACACTTGGAGATTGAGCGCGCATTAATGAATAAAG
AAATGATGGTGAATTTGTTACGTCCAATTGGGTAAGCTTAATGGTTTAAT
TATTTCAATATACGTATGGCCCAAGCGAGATTTTTGAGGGTTAAGCTGTG
GGGTAGACTATGCCGACCATGCAGAGAACAAGGGCCAGGC

protein sequence of rna5477

>rna5477-protein ID=rna5477-protein|Name=rna5477|organism=Nannochloropsis gaditana|type=polypeptide|length=227bp
MGIRTIYLLQCVFLLVLPSMGGKAVLRGPESVVADSTTNLEADPPTIISY
SPAPRSYLRTVGSPADAVKMALAAQAAAEKRMVDGAHCKIQWKWTVSKDQ
QNSTDGSLGVIMVLDEAGRQSDEATTPAFREWTPGATFEDEMEFANCPHA
KIQGFRIVFYPYQVPGAGPPEDDDPPTISFSHVEALEESPVLHESWRWTE
GAEDREIGKKGPFVASMERYTVAWITD

mRNA from alignment at CM002466.1:49862..52636-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5477 ID=rna5477|Name=rna5477|organism=Nannochloropsis gaditana|type=mRNA|length=2775bp|location=Sequence derived from alignment at CM002466.1:49862..52636- (Nannochloropsis gaditana)
GATGGACAACTCAAGAAGACGGCTCGAAAGCAGGGGCACATTCAATTACA
TAGCGCGCTTTTCACTTGGCTGACGTGTGAGAGATAGATTGATTTGTCTA
GTGTCTTGTAATACCCTTGTAATCGCCCGTTCTCTTTTTTTAAAGAAACC
TTCTGCTGGCATATCATTCGAAGGATCTGACACACCTGTGCTGCATCATG
CCACTTCCATTACACCTACATGAGCAGGTGCTTGGTTCCTAATATCGACG
GTAAATCACAATGGGAATTCGGACAATCTACCTTTTGCAATGCGTTTTCC
TTCTTGTCCTCCCCTCGATGGGAGGGAAAGCAGTCTTACGTGGTCCAGAG
AGCGTGGTTGCTGACAGCACCACAAACTTGGAAGCGGACCCGCCTACCAT
CATTTCCTATTCCCCAGCCCCACGTTCGTATTTGAGGACAGTTGGATCCC
CTGCTGACGCTGTGAAAATGGCGTTGGCGGCTCAAGCGGCCGCGGAGAAG
CGAATGGTCGATGGGGCCCATTGCAAAATCCAATGGAAATGGACTGTGTC
AAAAGATCAACAGAACTCAACGGTAAGCTCTCTGTCAGATACGAGATGCA
AGCCATCTGAAATTGTTAAGATGTTTATGAACTCAAACTGTGGCTGTCTA
TTTTTTAACGCTGCTCTTCTCTCCCTCCCTCCCACCTGTCTGCCAGGATG
GGAGCCTGGGTGTGATTATGGTCCTCGACGAAGCAGGGCGACAAAGCGAC
GAAGCAACCACTCCTGCTTTCCGTGAATGGACACCTGGCGCGACCTTTGA
GGACGAGATGGAGTTTGCCAACTGCCCGCATGCCAAAATCCAAGGCTTCC
GTATTGTCTTTTATCCGTATCAGGTATGGAGGCGGGGGACACCGTGTGGG
GAGAAGTACGAATGGCGGATGCATGCGGGATCTTCGATGGGAGACCCGGC
TTGATTCCCTGCTCATTCCTGTCCCACGGTATTTCTCCAAGCAAAACCCA
CCTGGGCTCTCTTCTCATTTCCGTTTCTTTTCCCTCCATTCGTTCGCGTT
GCCAGGTCCCCGGTGCAGGTCCTCCAGAGGACGACGACCCACCCACCATT
TCCTTTTCCCACGTGGAAGCGCTGGAGGAATCACCTGTCCTCCACGAGAG
CTGGCGCTGGACGGAAGGAGCAGAAGATCGAGAGATAGGAAAGAAAGGGC
CGTTCGTGGCGTCGATGGAGCGCTATACGGTGGCTTGGATCACAGATTAA
AATGGAGCAGCCTGCCTTGGAGGAGAAAAGAAGGAGAAAGCCTCAAAAGC
GTGAAAATTAGCTCAGGGAAAGTGAGGAAAAGAGAAGGGAGGGAGGAAAA
ACTTGAAGGCGTGTAAGTATGTACATGACAGAGGGTGGAGGACAACAGCA
ACAACAGCGACAACAACAACAACAACAACAACAACAACCAAAGCATGAGG
CGTGAAATTATTGTTGCAGCCATTCTCTGTGTTTCTTTTTGGACGCAATG
GGATGGTAGTCATCGGAACAGGGGGAAATACGAGTACCATCAGAGACAAC
TTCGGCTCTGTGCATTTGCCCATTTCTTATTGTAAGAAGAAATGTTAGAC
CACAATTAAGGGCATCAAAATGCATTTACTTCTGGGAAAGAGAGGAGTAA
GACACAAAGTATCGTGTTTTTGGGAGCATAGAACTTTTTGGGGGGACACA
ACGGACTCCCGACACTCTCAGGCTCAAGATAACCAGGTCTTTAAAAAAGC
CATATAACTCATTAAACCTCGATTTTATCAGTAAGTCAATCAAAAAAATG
TAAGATAAGAAATGGGGAACAAAATTTATTTTGCAAGAAGAGAAGAAGGA
AAAAAGAGACCCTCACAAGCAGAGAGGGCAGGGACAGGTACTACTCGCGT
CACGCAGACCCCAGAAAGCATCACAAACGAAAGTGATCCAAACATAAGAA
AATGAATAGCATGGCCAATAACCGGTAGTTTGGCCTGTGTATCCGTCGGC
TTTTGTATTGTGATGGTCGTGAAAATATTCTCGGAGATGAGGGGAAGTAG
GGCAGTACTCTAATGCTTCAAAGCACCATGAGAAAAAAGAATTTAAGCCC
ACGCTGCCCGGTCCTCTTTCAGCCACGACACTTATCCCTTAATGAGAAGC
ATGTCTACAAACTCTCCTTAGCAATATATTGGTTTGTGTCAAGAGAATAC
TTATCGGTCAGTACCCCTCCTACACTCGTAGTACTTGACGTTCGGACATA
CGTTTGGAGACTGAAGTATCGCGGCCTTTCAAGAAATTGGCACGCTTCAG
GTAAGAAACAAATCGGTAAGAGGTGCTGAGACACATGCTTCTTAATGTGT
GTTGTCTGTAAGCACATATGATGCTCTGGAAGTGAGACTATTGCCCTATT
TTCTCGAACCTACGGGCACGAACGCTGCGCAAGGGTGTGTGTGTATTTAG
CACGGGATCATGGTATGAGGCTTTTGGACTGACATTGGCGTCTTTGCGTC
CATAGGAGAAGCAAGACATGCCCTAGCAGCAGCCACAACCCACTTTATTT
CCTCCTTTCCTTTTCTCCCTTCCTGTCTGGGACATCCTTGCACGCACCAC
ATGTTATTGTAAAGTCTTCTCATTATCCTTGTTGCACAGACAGGCTTCTG
AAGCAGAGCACAGGGAGATGGACGCACCTCGTGTTGCTTCACTTGAAATC
TAAGGAGTACGGTTGAACCTTTCTCTCCCAAGGACTTCCCACCTCGTACA
ATGTCCCTCCTCCCTCCCGCCCTCC

Coding sequence (CDS) from alignment at CM002466.1:49862..52636-

>rna5477 ID=rna5477|Name=rna5477|organism=Nannochloropsis gaditana|type=CDS|length=2052bp|location=Sequence derived from alignment at CM002466.1:49862..52636- (Nannochloropsis gaditana)
GTCCCCGGTGCAGGTCCTCCAGAGGACGACGACCCACCCACCATTTCCTT
TTCCCACGTGGAAGCGCTGGAGGAATCACCTGTCCTCCACGAGAGCTGGC
GCTGGACGGAAGGAGCAGAAGATCGAGAGATAGGAAAGAAAGGGCCGTTC
GTGGCGTCGATGGAGCGCTATACGGTGGCTTGGATCACAGATTAAGATGG
GAGCCTGGGTGTGATTATGGTCCTCGACGAAGCAGGGCGACAAAGCGACG
AAGCAACCACTCCTGCTTTCCGTGAATGGACACCTGGCGCGACCTTTGAG
GACGAGATGGAGTTTGCCAACTGCCCGCATGCCAAAATCCAAGGCTTCCG
TATTGTCTTTTATCCGTATCAGATGGGAATTCGGACAATCTACCTTTTGC
AATGCGTTTTCCTTCTTGTCCTCCCCTCGATGGGAGGGAAAGCAGTCTTA
CGTGGTCCAGAGAGCGTGGTTGCTGACAGCACCACAAACTTGGAAGCGGA
CCCGCCTACCATCATTTCCTATTCCCCAGCCCCACGTTCGTATTTGAGGA
CAGTTGGATCCCCTGCTGACGCTGTGAAAATGGCGTTGGCGGCTCAAGCG
GCCGCGGAGAAGCGAATGGTCGATGGGGCCCATTGCAAAATCCAATGGAA
ATGGACTGTGTCAAAAGATCAACAGAACTCAACGGTCCCCGGTGCAGGTC
CTCCAGAGGACGACGACCCACCCACCATTTCCTTTTCCCACGTGGAAGCG
CTGGAGGAATCACCTGTCCTCCACGAGAGCTGGCGCTGGACGGAAGGAGC
AGAAGATCGAGAGATAGGAAAGAAAGGGCCGTTCGTGGCGTCGATGGAGC
GCTATACGGTGGCTTGGATCACAGATTAAGATGGGAGCCTGGGTGTGATT
ATGGTCCTCGACGAAGCAGGGCGACAAAGCGACGAAGCAACCACTCCTGC
TTTCCGTGAATGGACACCTGGCGCGACCTTTGAGGACGAGATGGAGTTTG
CCAACTGCCCGCATGCCAAAATCCAAGGCTTCCGTATTGTCTTTTATCCG
TATCAGATGGGAATTCGGACAATCTACCTTTTGCAATGCGTTTTCCTTCT
TGTCCTCCCCTCGATGGGAGGGAAAGCAGTCTTACGTGGTCCAGAGAGCG
TGGTTGCTGACAGCACCACAAACTTGGAAGCGGACCCGCCTACCATCATT
TCCTATTCCCCAGCCCCACGTTCGTATTTGAGGACAGTTGGATCCCCTGC
TGACGCTGTGAAAATGGCGTTGGCGGCTCAAGCGGCCGCGGAGAAGCGAA
TGGTCGATGGGGCCCATTGCAAAATCCAATGGAAATGGACTGTGTCAAAA
GATCAACAGAACTCAACGGTCCCCGGTGCAGGTCCTCCAGAGGACGACGA
CCCACCCACCATTTCCTTTTCCCACGTGGAAGCGCTGGAGGAATCACCTG
TCCTCCACGAGAGCTGGCGCTGGACGGAAGGAGCAGAAGATCGAGAGATA
GGAAAGAAAGGGCCGTTCGTGGCGTCGATGGAGCGCTATACGGTGGCTTG
GATCACAGATTAAGATGGGAGCCTGGGTGTGATTATGGTCCTCGACGAAG
CAGGGCGACAAAGCGACGAAGCAACCACTCCTGCTTTCCGTGAATGGACA
CCTGGCGCGACCTTTGAGGACGAGATGGAGTTTGCCAACTGCCCGCATGC
CAAAATCCAAGGCTTCCGTATTGTCTTTTATCCGTATCAGATGGGAATTC
GGACAATCTACCTTTTGCAATGCGTTTTCCTTCTTGTCCTCCCCTCGATG
GGAGGGAAAGCAGTCTTACGTGGTCCAGAGAGCGTGGTTGCTGACAGCAC
CACAAACTTGGAAGCGGACCCGCCTACCATCATTTCCTATTCCCCAGCCC
CACGTTCGTATTTGAGGACAGTTGGATCCCCTGCTGACGCTGTGAAAATG
GCGTTGGCGGCTCAAGCGGCCGCGGAGAAGCGAATGGTCGATGGGGCCCA
TTGCAAAATCCAATGGAAATGGACTGTGTCAAAAGATCAACAGAACTCAA
CG

Synonyms

Publications