rna547, rna547 (mRNA) Nannochloropsis gaditana

Overview
Namerna547
Unique Namerna547
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1389
Alignment locationCM002455.1:1367727..1369286 +

Link to JBrowse

Properties
Property NameValue
Productsodium-dependent glucose transporter 1
Orig transcript idgnl|cribi|Naga_100541g3.964.mrna
Orig protein idgnl|cribi|Naga_100541g3.964
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1367727..1369286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100541g3gene528Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna547rna547-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30127.1cds547Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna547 ID=rna547|Name=rna547|organism=Nannochloropsis gaditana|type=mRNA|length=1389bp
GATAAAATGTTACTTACTCAGACGCGTAGAGTCTCGGATAAGATGTCTTC
CTTGTGCCTTTCACCACACAACCAGACCAGACTTTTGTACTTCGTTTGCA
TTCCAGCGAGCGACGCCAGGGCGTGTCACCACTATGGCTCCCAACGCCAT
TTGGACCAAGGGGGGCCTTCGTGACGGGGTCAGGAGGTTAAAGGAATACC
TCTTACTCACATGCGTTTATTGCAATGTGGGACACAGACAGGTTTGAGCA
GGCCGAATGACCCCGCGCATGATATTTGGGGGATGAATGTGGATGTCGAA
CCAGCAGAAGGGGAGCCCCGGATGGATACCGGCAACACAGCATTGCCTCG
CGGCAGTCCCGGACTGGGAAAGAGCACAAACGACTTGCATGATGCCGCCA
AGAACTCCGCGTTCCAACAAGCACAGGAGCTGGAGAACCTGGACAAGCTA
CAAGATCGCCTCTTGGAAGCCGTCGGCATCGCATCCCAGACGCTTCGACA
GCTGAGCAACCCCGAGGAATTCGAAGAGGAAGAGGTCCAGAAAGCCTACC
AATCGTATCTTGAGCTCATGCGTGAAGTACACGAAGGACTCGCATCTCGC
GCGGCTTGGGTCAAAAATTACGTTCCATACCGTCGAAACACAAAGGAACT
AAGGCGTGAAGTCCGAATAAAAGAAATGCGGGTGGTCTGGCTGAAAGAGG
AGGCACGACGGTGGGGCTACAAGGACGAGGAGGCCAGAGGGGAGGAGGAG
GGGATAGGTCGTCCGGGAGGGGTAAAGACACCCTCTGGGAAAGAATCCGA
GTCGGATAGTCGGTAAGTGTGGATACATAGCATGAAAAAGAGGTTAACAC
ATAAACGGCAGGCGCCCCTCCCGTCCCACGCCCGCCTTGTCGCAGGGAAG
CACCGGGTCGGCCCCGCCTCTGGGCTTTTGCGGGGGTTTTCGGTGTTGCC
TCCCACGAATGCCGGAGCGCAGCATTTTTTTCGTTCGTGGGTAAAGGCGA
AGCACATCTTAGATCAGAAATCAAAGACAAACAGCTACATTGCGGACTCT
CGCTTTGTCCAAAGAGGAAGCGGGGCCCCGCACGCCGCACAGGAAGTGTT
ACAGCCAGCGTACCCCTCTTTTCCCTGTCAAAAATTACCTCTTCCCTTCC
TTCCTCCTCCGACTTATGAAACACATTCCCGCCGAGTAGTTTCCCCCCCA
GCACCACTCCATCCCTGCACGTCTCCTGTCATTCCTCATATCAAACATGC
TGCCCCCTGCCCCCCCTTGCCAACCCGCGCCTTCGCAGTGAGGCGCAGAG
CTAGCCTCGGCATTTTTCGGATATCTCCGAGCCTCCTCCCCGATCTCGCT
CACCAACGACCACATCCAGCACCATCACCTACTCCCTGC
back to top

protein sequence of rna547

>rna547-protein ID=rna547-protein|Name=rna547|organism=Nannochloropsis gaditana|type=polypeptide|length=519bp
MYSEEIEEGVRRSVCRARPASYPRPARGVGLITVIACISFFSLGGLVGVT
GPAIPSLTVHLGCRDETQLGSAFTCRGAGYLTGAVLASVLDTRCSKGKHL
VVVMGSLLAGLATLGIVWTHVFSGFLVLMVLQGLGLGCVDTAANAVVLEL
WGGSPHVEPLMQAMHACFGIGAVASPAAVGALGYVLAFRLWASIALLPLF
LWAGGLMMAGTGRTGDGEVLWGEATLPLLRDGAHHSEEGREEEPGSSRKE
RETLPRPFRDREAGLGRPTSVPSTVLAHAQAASPKPSIAPPASSPLASLP
KSLQAGVSFFLLIYVGIEVGYGGWIATVLLRQGLTQSLPVASYSVSMFWG
AITLGRLLAIPLATCLPPVPSLLLQLGLSTLGAICLLTFAFQTLWTAAVA
SVVFGLGLSSIFPTVMLLPEALGYQVTMWSTSTFLVGACLGEGIIPMGIG
WLMGSKGIGTGSFAWAMAAACLALWVLAGCFFSRWRVRAGTGCPPGRGGG
EGGGQARMGEDIETVPGPA
back to top

mRNA from alignment at CM002455.1:1367727..1369286+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna547 ID=rna547|Name=rna547|organism=Nannochloropsis gaditana|type=mRNA|length=1560bp|location=Sequence derived from alignment at CM002455.1:1367727..1369286+ (Nannochloropsis gaditana)
ATGTACAGCGAGGAGATTGAAGAGGGCGTCCGGCGTTCCGTCTGTCGTGC AAGACCAGCCTCGTATCCTCGTCCGGCACGGGGCGTGGGGCTCATAACTG TCATCGCAtgcatctctttcttttccttgggGGGCTTGGTCGGAGTGACG GGGCCCGCCATTCCAAGCCTCACCGTCCACCTGGGGTGCCGCGACGAAAC TCAACTTGGTAGCGCCTTCACATGTCGCGGAGCCGGCTATTTGACGGGGG CCGTGCTGGCGTCGGTGCTCGACACCCGATGTTCGAAGGGAAAAcacctg gtggtggtgatgggaAGCCTCTTGGCAGGCTTGGCGACCTTGGGGATCGT CTGGACGCACGTGTTTTCGGGGTTTCTGGTCCTGATGGTGTTGCAAGGCT TGGGTCTGGGGTGTGTGGATACGGCCGCAAATGCGGTGGTGCTCGAGCTG TGGGGGGGCAGCCCACACGTGGAACCGCTCATGCAAGCTATGCACGCCTG CTTTGGGATCGGTGCGGTGGCTTCTCCTGCCGCAGTGGGTGCCTTGGGTT ACGTGCTGGCCTTCCGACTCTGGGCAAGCatcgcgctcctccctctcttc ctgtGGGCCGGCGGCCTGAtgatggcggggacgggaaggacagGCGACGG CGAAGTGTTGTGGGGGGAAGCAACCCTCCCGCTGTTGAGGGACGGAGCCC ATCatagcgaggagggaagggaggaggagccggggAGCTctaggaaggag agggagaccctccccaggccgttccgcgacagggaggcaggTCTCGGGAG ACCCACATCTGTACCCAGCACGGTCCTCGCACATGCCCAAGCGGCCTCCC CCAAGCCCTCCATTGCCCcgccggcgtcctccccccttgcctccttgccc aAGAGCCTCCAGGCGGGCGTGTCGTTCTTTCTGCTCATCTACGTCGGCAT TGAAGTTGGGTACGGGGGCTGGATcgccaccgtcctcctccgtcagggGC TCACCCAGTCTTTACCCGTCGCTTCCTACTCCGTCTCCATGTTTTGGGGC GCCATCACCCTCGGTCGTCTCCTTGCCATCCCTCTGgccacctgcctccc ccccgtcccgtccctcctcctccagctcggccTCAGCACCCTGGGAGCCA TCTgtctcctcaccttcgccTTCCAAACCTTGTGGACCGCCGCCGTGGCC AGCGTCGTCTTCGGTTTGggtctctcctccatttttcccACCGTGATGCT CCTCCCAGAAGCCCTAGGGTACCAGGTGACCATGTGGAGCACCAGCACCT TCCTGGTCGGGGCctgcctgggggagggaatcaTCCCCATGGGCATAGGC TGGTTGATGGGGTCGAAAGGCATTGGGACTGGGAGTTTTGCCTgggccat ggcggcggcTTGTCTGGCCTTGTGGGTTTTGGCCGGGTGCTTCTTCTCGA GGTGGCGCGTACGTGCGGGGACAGGGTGCCCTCCtggcagagggggggga gaaggggggggacaggcgCGGATGGGGGAGGATATAGAGACAGTGCCGGG CCCTGCTTAG
back to top

Coding sequence (CDS) from alignment at CM002455.1:1367727..1369286+

>rna547 ID=rna547|Name=rna547|organism=Nannochloropsis gaditana|type=CDS|length=1560bp|location=Sequence derived from alignment at CM002455.1:1367727..1369286+ (Nannochloropsis gaditana)
ATGTACAGCGAGGAGATTGAAGAGGGCGTCCGGCGTTCCGTCTGTCGTGC
AAGACCAGCCTCGTATCCTCGTCCGGCACGGGGCGTGGGGCTCATAACTG
TCATCGCAtgcatctctttcttttccttgggGGGCTTGGTCGGAGTGACG
GGGCCCGCCATTCCAAGCCTCACCGTCCACCTGGGGTGCCGCGACGAAAC
TCAACTTGGTAGCGCCTTCACATGTCGCGGAGCCGGCTATTTGACGGGGG
CCGTGCTGGCGTCGGTGCTCGACACCCGATGTTCGAAGGGAAAAcacctg
gtggtggtgatgggaAGCCTCTTGGCAGGCTTGGCGACCTTGGGGATCGT
CTGGACGCACGTGTTTTCGGGGTTTCTGGTCCTGATGGTGTTGCAAGGCT
TGGGTCTGGGGTGTGTGGATACGGCCGCAAATGCGGTGGTGCTCGAGCTG
TGGGGGGGCAGCCCACACGTGGAACCGCTCATGCAAGCTATGCACGCCTG
CTTTGGGATCGGTGCGGTGGCTTCTCCTGCCGCAGTGGGTGCCTTGGGTT
ACGTGCTGGCCTTCCGACTCTGGGCAAGCatcgcgctcctccctctcttc
ctgtGGGCCGGCGGCCTGAtgatggcggggacgggaaggacagGCGACGG
CGAAGTGTTGTGGGGGGAAGCAACCCTCCCGCTGTTGAGGGACGGAGCCC
ATCatagcgaggagggaagggaggaggagccggggAGCTctaggaaggag
agggagaccctccccaggccgttccgcgacagggaggcaggTCTCGGGAG
ACCCACATCTGTACCCAGCACGGTCCTCGCACATGCCCAAGCGGCCTCCC
CCAAGCCCTCCATTGCCCcgccggcgtcctccccccttgcctccttgccc
aAGAGCCTCCAGGCGGGCGTGTCGTTCTTTCTGCTCATCTACGTCGGCAT
TGAAGTTGGGTACGGGGGCTGGATcgccaccgtcctcctccgtcagggGC
TCACCCAGTCTTTACCCGTCGCTTCCTACTCCGTCTCCATGTTTTGGGGC
GCCATCACCCTCGGTCGTCTCCTTGCCATCCCTCTGgccacctgcctccc
ccccgtcccgtccctcctcctccagctcggccTCAGCACCCTGGGAGCCA
TCTgtctcctcaccttcgccTTCCAAACCTTGTGGACCGCCGCCGTGGCC
AGCGTCGTCTTCGGTTTGggtctctcctccatttttcccACCGTGATGCT
CCTCCCAGAAGCCCTAGGGTACCAGGTGACCATGTGGAGCACCAGCACCT
TCCTGGTCGGGGCctgcctgggggagggaatcaTCCCCATGGGCATAGGC
TGGTTGATGGGGTCGAAAGGCATTGGGACTGGGAGTTTTGCCTgggccat
ggcggcggcTTGTCTGGCCTTGTGGGTTTTGGCCGGGTGCTTCTTCTCGA
GGTGGCGCGTACGTGCGGGGACAGGGTGCCCTCCtggcagagggggggga
gaaggggggggacaggcgCGGATGGGGGAGGATATAGAGACAGTGCCGGG
CCCTGCTTAG
back to top
Synonyms
Publications