rna5466, rna5466 (mRNA) Nannochloropsis gaditana

Overview
Namerna5466
Unique Namerna5466
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2549
Alignment locationCM002466.1:13389..14237 -

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Properties
Property NameValue
Productcytochrome p450
Orig transcript idgnl|cribi|Naga_100790g1.7583.mrna
Orig protein idgnl|cribi|Naga_100790g1.7583
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:13389..14237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100790g1gene5281Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5466rna5466-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25219.1cds5453Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5466 ID=rna5466|Name=rna5466|organism=Nannochloropsis gaditana|type=mRNA|length=2549bp
AAACGAGTGGATGGAAAGGCTGGTGGGGTGCATGGGGAGAGAGTGTGGAG
GAAGAAGAAGAGGAGGAGGATGCAGCGGCAGAGGGTGGGCGGGAAGCTCG
GGCAGAGGCGTGGGCGGAGTTGGAGCATGCCTTTAGTGTATTCCCGGATG
AAGAACGGGCTCGACAGCTGGTGGAGTTGGCGCGCATGAGGCGGGAAGAG
GCACGGAGGTTGGCTGAGGGGGATTGAGGAATGGTGGGGTGTGGATGGCA
GCAAGGAGGATGAAAGATGGACAGGAGGGCGTACAGGATCTTCGGTGGAC
TTGCGCGTAGAAGGCCGCGCTCGGAGGGGCGGAGGGACAGCAACATGGGC
CGAAGCCAGTCTTGAAGGAAGAGCAAAGGGCAGGGGATACGGGCCGCGGG
CTCCTTGGGTACGCGGGGCCGAGGGAGGGAGATGGGGAGGGCGGGGAGAG
GAGTTAGGGAGGGAAGGAGGAAATTAAGAGGCGGGGAATATCTCCGAGTG
CTGGCAAGACTCCCACGTTCCGATCTTCTCATACATGCGCCACTCTACCT
CCCTTCCTTTTCCCCTCCCTCTCTCCCTCCCTTGCTCCTCTTCCTCTTTT
TGCCTCCCTCGTCTGCTGCTGTCCTCTTATTCGGGGGCGTGATCTCTGCG
CCCATCTACCGACCTCGACGTCCATGGATTGTGCTTTATCTATTGCCCTT
TCCGTCGTACCCTCTCCTTTTCTATCTATTGCCCTTTCCGTCGTACCCTC
TCCTTTTCTATCTATTGCCCTTTCCGTCGTACCCTCTCCTTTTCTATCTA
TTGCCCTTTCCGTCGTACCCTCTCCTTTTCTATCTATTGCCCTTTCCGTC
GTACCCTCTCCTTTTCTATCTATTGCCCTTTCCGTCGTACCCTCTCCTTT
TCTATCTATTGTCCTTTCCGTCGTACCCTCTCCTTTTCTATCTATCGCCC
TTTCTGTTGCGTCCATTATTGTCACTCCTGTCGTATCTTCTCTCTTTTTC
CCATTTCCCCCCCCTTCCTTGCCTTTTGTCTCGTTTCCTCTGGCCCTGGA
GAGTCCTTAGGACGCCTCCGGAGCCCGGGAAAAGATTGGAACGATGGCCT
GAAGGCAACAGCGTCTTGACGCTTCTCGTTGGGGAGGGAGGGCCGACGCG
GTCATGAGGAGTTCGCAGCGTGCGGACGGGCTCAGGCGTCTGCAGAGTCG
GCGGCCCGTGTGGGCGAGGCTGAGGGGCAGAGGGATGGGTCCCGCTTGAG
ACGCGATGTGTGCAGGCGAAAGATAGCGAATGAAAGGCCCGTTTCGCTTG
TGTGGCTGGCCCGAGGACGGGATGGGACGTTTGAATGACCTGCCGGCGGT
GGTTTTGGGGAGCCTGCGCCTGTGTGGGGATGGGTCGAATCTCCAGCCAC
CTTAGAAGACATTAAAGATGCATTAAGTGGTGATGTTCCCGGACTTTTGT
GTGCGATGTGTGCTATTGTGAAATTCGTGGAGGATAGTGTAGGCTATCTG
CGAGGCCTTTTACGGATATGGGATCTGAGACTCGCGCTTCGCCTGCTCCC
TCCCACTAGGGTAGGAAGCTTTCCATGACGGACATGGATTCTGTATGGGC
GCTCCTTGCACTCACCTCAACCGAACAGCGCGCACGGACTCCACGAAAAA
ACGCATATCTCCGGGTCCAAGCCCCTGTGGCATTTCTCATCCGTCGCTTT
GTCTCTGACCTCCGACCCCACAGGAGCCTCATCATCCATCACCTGAATGG
CCACCCATCCCCTACCCTCCCCCTCCTCCCGCCCCCCAACCTCCTCCCCC
CCCTCCGCCGTCGACAGCCCTACCCCCGAAGGCCCGCGCCCGCCCTCCGT
CTCCTTCCACGGCGAGCAGGGCGGGTCCGAGGGCCGGGACCGGGGCCACG
TCAGCGCCGCCCCCCGCATGGGTGGGATCCTTGCGAAGGGCTCTTGTCGC
TCCTGTCTGGGGATCACGCTGCTGACCCGAAAGATGAAAGACCGAGCCCA
GCCCCCAGCGTGCTACGGGATCCGGCGGACGCATTCCGTCACGGAGCTTC
CCGAGCTGGAGGACGCCTACATCGAGGAAGTGCTTCGGAACGGCCGGGCC
CGATGGACCTATGTCTGTGTGGGGGCGAGCGAGACCCTGGAGCCCACCGT
CACCACGTCTGCAGTCCCTTCCCTCCCTTCGCACGCTGGGGAGGAACCCC
TACCCCCTCTGGCGGGGGAGGGGCGGGAGGGCGGGAGGGAGGGCGGGAGG
GAGGGGCGGAGGGCGGACTGGACTCCCTTGCCCACCTGCCGGGGCCTGTT
GGTGTTTATGGACGGCGACGAGGAGCGCTTGGAGGACGCATTGGGGCGGG
CGGGGGAAGGCGAGGGAAGGAGGGAGGGTGGGAAGGGGGTCAGCGAGCGG
CCTCCGCACGTGACGGGAGGGATCATGAGCCGTCGTGCCTCCGCCTCGCC
CTCCGCCCCGCCCTCGGACCCGATGAAACCCTTGGAGGAAGCGGCCCGTC
GGGTTGGGGCCTTTTGGGCGAACGCCACGGACGACTTTGCGGCAAAGGT
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protein sequence of rna5466

>rna5466-protein ID=rna5466-protein|Name=rna5466|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MAHLIPSFPSSLTTVISLLFPLVLLALATFALLWLSKLVTIYLWNSYQSR
HLPCVHQFLDFFSPLGILFPRLLRYRSNFYEIAPSLFERLQTPLFAFVSS
RGLSVHIKDAHLIREVSITRRRAFPKAVRLYNRLRIFGDNIVTTEGAVWR
RHRQVVRSAFTESNNRLVFDTAKRSLARMPGYYQ
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mRNA from alignment at CM002466.1:13389..14237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5466 ID=rna5466|Name=rna5466|organism=Nannochloropsis gaditana|type=mRNA|length=849bp|location=Sequence derived from alignment at CM002466.1:13389..14237- (Nannochloropsis gaditana)
ATGGCCCACCTCATCCCATCATTCCCCTCCTCGTTGACTACTGTTATTTC
CTTGCTCTTCCCGCTGGTCTTGCTCGCCCTGGCCACGTTCGCTCTCTTGT
GGCTGAGCAAACTCGTTACCATCTACCTGTGGAACTCATACCAGGTATGA
CAAGCAAAGCTTTCCATTCCCGCATTCGACACGTGTTGGGGGAGGCAAAC
AACTTTGTTGCTAACATCTGCGTCGTCTGTCTGGCCCTTCTCCGCGCGCC
TCCTCCTTCTTCCTGTTCCATTGACCTTCCCTCCCGATTCTCCTCTCATT
CTTGCCCGTTTTTGATGCCAACCTTATGCAGAGCCGACACCTTCCGTGTG
TCCATCAATTTTTGGATTTCTTCTCCCCCCTCGGCATCCTCTTCCCTCGC
CTGCTCCGGTACAGGTCAAATTTCTACGAAATAGCCCCCTCCTTGTTTGA
GAGGTTGCAGACACCCCTCTTCGCCTTCGTCTCCTCCCGCGGTCTGAGCG
TCCATATCAAAGACGCGCATTTGATTCGTGAGGTCAGCATTACCCGACGA
CGTGCCTTTCCCAAAGCGGTCCGTCTCTACAACCGGCTTCGGATTTTCGG
AGATAACATCGTCACCACGGAAGGCGCCGTCTGGCGGCGACACCGGCAGG
TGGTTCGGTCCGCGTTCACTGAATCGAACAATCGGCTTGTGTTCGACACG
GCCAAAAGGTCCTTGGCGAGGATGGTGGCCGCGTGGGAGGGGGAGCGGGA
AGGAGGGAAGGAGGGCGGGAAGGAGGGCGGGAAGGAGGGCGAGTTGCGCA
TCACGATTATGGAGGACATGACGCAGCTCAGCCTGGCTATTATCAGTGA
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Coding sequence (CDS) from alignment at CM002466.1:13389..14237-

>rna5466 ID=rna5466|Name=rna5466|organism=Nannochloropsis gaditana|type=CDS|length=1665bp|location=Sequence derived from alignment at CM002466.1:13389..14237- (Nannochloropsis gaditana)
CCTGGCTATTATCAGTGAAGCCGACACCTTCCGTGTGTCCATCAATTTTT
GGATTTCTTCTCCCCCCTCGGCATCCTCTTCCCTCGCCTGCTCCGGTACA
GGTCAAATTTCTACGAAATAGCCCCCTCCTTGTTTGAGAGGTTGCAGACA
CCCCTCTTCGCCTTCGTCTCCTCCCGCGGTCTGAGCGTCCATATCAAAGA
CGCGCATTTGATTCGTGAGGTCAGCATTACCCGACGACGTGCCTTTCCCA
AAGCGGTCCGTCTCTACAACCGGCTTCGGATTTTCGGAGATAACATCGTC
ACCACGGAAGGCGCCGTCTGGCGGCGACACCGGCAGGTGGTTCGGTCCGC
GTTCACTGAATCGAACAATCGGCTTGTGTTCGACACGGCCAAAAGGTCCT
TGGCGAGGATGATGGCCCACCTCATCCCATCATTCCCCTCCTCGTTGACT
ACTGTTATTTCCTTGCTCTTCCCGCTGGTCTTGCTCGCCCTGGCCACGTT
CGCTCTCTTGTGGCTGAGCAAACTCGTTACCATCTACCTGTGGAACTCAT
ACCAGCCTGGCTATTATCAGTGAAGCCGACACCTTCCGTGTGTCCATCAA
TTTTTGGATTTCTTCTCCCCCCTCGGCATCCTCTTCCCTCGCCTGCTCCG
GTACAGGTCAAATTTCTACGAAATAGCCCCCTCCTTGTTTGAGAGGTTGC
AGACACCCCTCTTCGCCTTCGTCTCCTCCCGCGGTCTGAGCGTCCATATC
AAAGACGCGCATTTGATTCGTGAGGTCAGCATTACCCGACGACGTGCCTT
TCCCAAAGCGGTCCGTCTCTACAACCGGCTTCGGATTTTCGGAGATAACA
TCGTCACCACGGAAGGCGCCGTCTGGCGGCGACACCGGCAGGTGGTTCGG
TCCGCGTTCACTGAATCGAACAATCGGCTTGTGTTCGACACGGCCAAAAG
GTCCTTGGCGAGGATGATGGCCCACCTCATCCCATCATTCCCCTCCTCGT
TGACTACTGTTATTTCCTTGCTCTTCCCGCTGGTCTTGCTCGCCCTGGCC
ACGTTCGCTCTCTTGTGGCTGAGCAAACTCGTTACCATCTACCTGTGGAA
CTCATACCAGCCTGGCTATTATCAGTGAAGCCGACACCTTCCGTGTGTCC
ATCAATTTTTGGATTTCTTCTCCCCCCTCGGCATCCTCTTCCCTCGCCTG
CTCCGGTACAGGTCAAATTTCTACGAAATAGCCCCCTCCTTGTTTGAGAG
GTTGCAGACACCCCTCTTCGCCTTCGTCTCCTCCCGCGGTCTGAGCGTCC
ATATCAAAGACGCGCATTTGATTCGTGAGGTCAGCATTACCCGACGACGT
GCCTTTCCCAAAGCGGTCCGTCTCTACAACCGGCTTCGGATTTTCGGAGA
TAACATCGTCACCACGGAAGGCGCCGTCTGGCGGCGACACCGGCAGGTGG
TTCGGTCCGCGTTCACTGAATCGAACAATCGGCTTGTGTTCGACACGGCC
AAAAGGTCCTTGGCGAGGATGATGGCCCACCTCATCCCATCATTCCCCTC
CTCGTTGACTACTGTTATTTCCTTGCTCTTCCCGCTGGTCTTGCTCGCCC
TGGCCACGTTCGCTCTCTTGTGGCTGAGCAAACTCGTTACCATCTACCTG
TGGAACTCATACCAG
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Synonyms
Publications