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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100089g17.9642.mrna |
| Orig protein id | gnl|cribi|Naga_100089g17.9642 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:1060337..1063231 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5461 ID=rna5461|Name=rna5461|organism=Nannochloropsis gaditana|type=mRNA|length=216bp
ATGTCCCTATCATCTAATGCGTGTCGAAGTGTTTGGTTCTACCAACGCTT
CCCTCCGCATGAGAAAGCCCGCCATTACCTCAAAGCCTTGACAAGTGGAC
ATTCAGGTTATAGAGTGAAGGAATTGAACATAGCCCATCGCATGATTTCG
TCATGTTGTTGCTCATACACATGCTACTGGATCGACACGCCTGCGCAGCT
TGAGCGGTCACCTTGA back to topprotein sequence of rna5461 >rna5461-protein ID=rna5461-protein|Name=rna5461|organism=Nannochloropsis gaditana|type=polypeptide|length=677bp
MASNWQRKLEKAVVLILSGIWRIRLTLSATLDSPSPQAWPSSYTVANAPG
RAPFFRGDSFVVYSQPMTTKYGEACNERQAPIPLPAYIAARFNGSVMAVT
GLEVDVVQVDSNTGLERSVPRADFYNHHYILGLRSAWYISPSASPSDEEQ
VEQQEAISTGSREGNATHGLLLPHGGKGRVRDGSFRKDIADADLKASTSS
HDQGTFGGVRRTQESAVLQPDLGDRLSPKTSASAPPLRNVSRAISALRGT
IPLLQVFCEANGGEYKETYRGFPPGYAQLIASPAYFWPIQLHFINTRASV
PRSLVPASSRADPTRDSWNGLIECPCSNRRTFDLRANLVDGKPPYPVHCQ
GEVLAQRNPVCSLATYQGGLRCCEPGMVLLDREQLQPVEEDTYLLKVRFW
YEEYREEGAGQGRGDAVEGIVGKGPRMVQEGGRAVVSGHEKGKVTVGREE
KGEPPEGKITDDRVEGVRRLAAVKDSKMPVYETYEEPEPSPPIRASHAHL
FKVYLQTEQWAGEYDVPPCDPRTTLDSSQCVHVLTSLNVARELFSDCAFS
TDKDCADLKALREAGGLFKLVYAAGHVHVGGLSLELINADTGALICRNEP
IYDPATGLIASTPPCVWGDVQEAEGEGEGGRQLLPAPPVLHAETRLLSIA
RYNSSGSGHLGVMASWQMRAAYAFGDV back to topmRNA from alignment at CM002465.1:1060337..1063231+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5461 ID=rna5461|Name=rna5461|organism=Nannochloropsis gaditana|type=mRNA|length=2895bp|location=Sequence derived from alignment at CM002465.1:1060337..1063231+ (Nannochloropsis gaditana)
GATGGGCTATGTTCAATTCCTTCACTCTATAACCCTATCAATGTCCCAGT
CAAATGATATCGCCCGATAAACTTATTCCTGGACAGAGGTGTTGTCTCTT
AACATGCAACTGAATGTCCACTTGTCAAGGCTTTGAGGTAATGGCGGGCT
TTCTCATGCGGAGGGAAGCGTTGGTAGAACCAAACACTTCGACACGCATT
AGATGATAGGGACATCTTCACACAGGTAAAAGGGATCGAATGGACAAGCT
TTCGTAGTCAAGACTGAAAATCATACTGTGGAATCTATACGGGATAGATT
TGCGCCCACTGCTAGCGCCTTGGGGGGTAGGGACAGGGCGCCGCCGCTCG
TTACTTCAAGTGCTACACTGCGCTTTCACAAAACTCAGAGGTTGCCTCAC
CCACATTAAAGAATCACGTACCGTTCCGTACTTCACGTGCAAAATATACA
CAGGACAAAGTGTGAAGTCTGGCATGTAAGATGCCACTCGCATTTCTTTA
CGTATAATGCGAAGCCCTCGATTCATAATTGGTGTAGtaacctcctcttc
ccaatTTTCCTGGAAGCTTTTTCCCTTGTTTTCATTTAAAAGAACAGTTG
GGAAAATATAATGGCTTCAAATTGGCAAAGAAAGCTTGAAAAAGCAGTCG
TCCTCATACTTAGCGGCATCTGGCGCATAAGATTGACCTTGTCTGCAACG
CTCGATTCTCCGTCGCCCCAAGCCTGGCCCTCTTCATACACCGTGGCGAA
CGCCCCTGGACGTGCGCCCTTCTTTCGGGGCGACTCCTTCGTGGTGTACT
CACAACCTATGACTACCAAGTATGGAGAGGCCTGCAACGAGAGGCAAGCG
CCGATTCCCTTGCCTGCTTACATTGCCGCTCGCTTCAACGGGTCGGTCAT
GGCGGTAACAGGTCTGGAGGTCGACGTCGTCCAAGTCGACTCTAACACAG
GCCTAGAGCGAAGCGTGCCCAGGGCAGATTTTTACAATCATCATTATATA
CTTGGGCTGCGCTCCGCCTGGTACATATCCCCCTCTGCGTCTCCAAGTGA
TGAAGAGCAAGTTGAGCAGCAGGAAGCAATTAGCACCGGTAGtcgggaag
gaaatgcaacGCATGGCCTGCTTTTGCCCCACGGCGGTAAGGGCCGCGTG
CGAGATGGTAGTTTTCGAAAAGATATCGCAGACGCTGACCTCAAGGCGTC
AACGAGCAGCCACGACCAGGGAACCTTCGGTGGCGTCAGGCGCACCCAGG
AGAGCGCCGTGCTCCAACCTGATCTTGGCGACCGTCTGAGCCCCAAGACC
TCggcttcagctcctcctctacgGAATGTCTCCAGAGCCATCTCTGCCTT
ACGAGGgaccatccctctccttcaagtTTTCTGTGAGGCCAATGGGGGGG
AATATAAGGAAACCTACCGAGGTTTTCCACCCGGCTATGCCCAACTGATT
GCCTCCCCCGCCTATTTCTGGCCAATTCAGCTTCATTTTATCAATACCAG
GGCCTCTGTACCtcgctccctcgtccctgccTCGTCCCGCGCCGACCCAA
CCCGGGACTCATGGAACGGACTGATCGAATGCCCCTGCTCCAACAGGCGG
ACCTTCGACCTGAGGGCGAATTTGGTGGATGGGAAGCCCCCATACCCGGT
CCACTGCCAAGGTGAGGTGCTGGCCCAGAGGAATCCCGTCTGCTCCCTTG
CCACCTACCAAGGTGGCCTCCGCTGCTGCGAGCCTGGCATGGTCTTGCTG
GACAGGGAGCAGCTGCAgccagtggaggaggacacctACCTACTGAAGGT
GCGCTTCTGGTACGAGGAGTaccgcgaggagggggccgggcaagggcggg
gggacgcAGTGGAGGGCATTGTGGGCAAAGGGCCGAGAATGGttcaggag
ggggggagagcggttGTATCTGGGcatgagaaagggaaagtaacggtggg
gagggaggaaaagggggagccGCCCGAAGGAAAAATTACCGACgacaggg
tggagggagttCGGAGGCTTGCTGCTGTCAAAGACAGCAAGATGCCTGTA
TATGAGACGTACGAAGAACCAGAGCCTTCACCACCGATTCGCGCCTCGCA
TGCTCACCTGTTCAAAGTCTACCTCCAGACGGAGCAGTGGGCGGGCGAGT
ACGACGTCCCCCCCTGCGACCCCCGCACCACCCTCGATTCCTCCCAGTGC
GTACACGTGCTTACGAGTCTCAACGTTGCCCGCGAGCTCTTTAGCGATTG
CGCCTTCTCGACTGATAAGGACTGCGCGGACCTGAAAGCCCttagggagg
cggggggcctgTTCAAGCTCGTGTACGCGGCGGGGCACGTGCACGTCGGG
GGGCTGTCGCTGGAGCTGATCAATGCCGATACAGGCGCTCTGATCTGTCG
CAACGAACCTATTTACGACCCGGCGACTGGGCTTATCGCCAGCACTCCCC
CCTGTGTGTGGGGCGACGtgcaggaggcagagggagagggggagggcggg
cgtcaGCTGCTTCCAGCTCCGCCGGTGCTGCATGCCGAGACCCGGCTCCT
GTCGATTGCTCGGTATAATTCGAGCGGGAGCGGGCATTTGGGGGTGATGG
CTTCCTGGCAGATGCGCGCAGCCTACGCTTTTGGGGATGTTTGAATGTCT
GGATCTCAGGtggaaagcaggaggagggcggaggtgctGCAGTTGTCCTG
CTCTCCATAAAACCGTTTGTGTTCGTTTCAATCTAAGTATACTCGGGAAA
AAGTCAAAATAGCGtctgtctttttcttggaagaaaaaaagacgaCGACA
AGAAACAGTCAGACCGCGAGGCCGCTGCTTGAAGTGCGTGCCTCCGGGCA
AGCTTTCTCGCCGTCTAGCAGTCTTAAGTTCTTCTCGTCTAAACA back to topCoding sequence (CDS) from alignment at CM002465.1:1060337..1063231+ >rna5461 ID=rna5461|Name=rna5461|organism=Nannochloropsis gaditana|type=CDS|length=2034bp|location=Sequence derived from alignment at CM002465.1:1060337..1063231+ (Nannochloropsis gaditana)
ATGGCTTCAAATTGGCAAAGAAAGCTTGAAAAAGCAGTCGTCCTCATACT
TAGCGGCATCTGGCGCATAAGATTGACCTTGTCTGCAACGCTCGATTCTC
CGTCGCCCCAAGCCTGGCCCTCTTCATACACCGTGGCGAACGCCCCTGGA
CGTGCGCCCTTCTTTCGGGGCGACTCCTTCGTGGTGTACTCACAACCTAT
GACTACCAAGTATGGAGAGGCCTGCAACGAGAGGCAAGCGCCGATTCCCT
TGCCTGCTTACATTGCCGCTCGCTTCAACGGGTCGGTCATGGCGGTAACA
GGTCTGGAGGTCGACGTCGTCCAAGTCGACTCTAACACAGGCCTAGAGCG
AAGCGTGCCCAGGGCAGATTTTTACAATCATCATTATATACTTGGGCTGC
GCTCCGCCTGGTACATATCCCCCTCTGCGTCTCCAAGTGATGAAGAGCAA
GTTGAGCAGCAGGAAGCAATTAGCACCGGTAGtcgggaaggaaatgcaac
GCATGGCCTGCTTTTGCCCCACGGCGGTAAGGGCCGCGTGCGAGATGGTA
GTTTTCGAAAAGATATCGCAGACGCTGACCTCAAGGCGTCAACGAGCAGC
CACGACCAGGGAACCTTCGGTGGCGTCAGGCGCACCCAGGAGAGCGCCGT
GCTCCAACCTGATCTTGGCGACCGTCTGAGCCCCAAGACCTCggcttcag
ctcctcctctacgGAATGTCTCCAGAGCCATCTCTGCCTTACGAGGgacc
atccctctccttcaagtTTTCTGTGAGGCCAATGGGGGGGAATATAAGGA
AACCTACCGAGGTTTTCCACCCGGCTATGCCCAACTGATTGCCTCCCCCG
CCTATTTCTGGCCAATTCAGCTTCATTTTATCAATACCAGGGCCTCTGTA
CCtcgctccctcgtccctgccTCGTCCCGCGCCGACCCAACCCGGGACTC
ATGGAACGGACTGATCGAATGCCCCTGCTCCAACAGGCGGACCTTCGACC
TGAGGGCGAATTTGGTGGATGGGAAGCCCCCATACCCGGTCCACTGCCAA
GGTGAGGTGCTGGCCCAGAGGAATCCCGTCTGCTCCCTTGCCACCTACCA
AGGTGGCCTCCGCTGCTGCGAGCCTGGCATGGTCTTGCTGGACAGGGAGC
AGCTGCAgccagtggaggaggacacctACCTACTGAAGGTGCGCTTCTGG
TACGAGGAGTaccgcgaggagggggccgggcaagggcggggggacgcAGT
GGAGGGCATTGTGGGCAAAGGGCCGAGAATGGttcaggagggggggagag
cggttGTATCTGGGcatgagaaagggaaagtaacggtggggagggaggaa
aagggggagccGCCCGAAGGAAAAATTACCGACgacagggtggagggagt
tCGGAGGCTTGCTGCTGTCAAAGACAGCAAGATGCCTGTATATGAGACGT
ACGAAGAACCAGAGCCTTCACCACCGATTCGCGCCTCGCATGCTCACCTG
TTCAAAGTCTACCTCCAGACGGAGCAGTGGGCGGGCGAGTACGACGTCCC
CCCCTGCGACCCCCGCACCACCCTCGATTCCTCCCAGTGCGTACACGTGC
TTACGAGTCTCAACGTTGCCCGCGAGCTCTTTAGCGATTGCGCCTTCTCG
ACTGATAAGGACTGCGCGGACCTGAAAGCCCttagggaggcggggggcct
gTTCAAGCTCGTGTACGCGGCGGGGCACGTGCACGTCGGGGGGCTGTCGC
TGGAGCTGATCAATGCCGATACAGGCGCTCTGATCTGTCGCAACGAACCT
ATTTACGACCCGGCGACTGGGCTTATCGCCAGCACTCCCCCCTGTGTGTG
GGGCGACGtgcaggaggcagagggagagggggagggcgggcgtcaGCTGC
TTCCAGCTCCGCCGGTGCTGCATGCCGAGACCCGGCTCCTGTCGATTGCT
CGGTATAATTCGAGCGGGAGCGGGCATTTGGGGGTGATGGCTTCCTGGCA
GATGCGCGCAGCCTACGCTTTTGGGGATGTTTGA back to top
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