rna5460, rna5460 (mRNA) Nannochloropsis gaditana

Overview
Namerna5460
Unique Namerna5460
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1377
Alignment locationCM002465.1:1060260..1060551 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100089g16.9650.mrna
Orig protein idgnl|cribi|Naga_100089g16.9650
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:1060260..1060551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100089g16gene5275Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5460rna5460-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25241.1cds5447Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5460 ID=rna5460|Name=rna5460|organism=Nannochloropsis gaditana|type=mRNA|length=1377bp
ATGAAGTCAGGAGGTGACCAAGCGGGATGCTTGAATCGTATATACTTCCG
ACGGTATTGGCAGCGTTGCATACTTTTCGAAAGACGGCGTGTTGCTTTCA
GCAGAGCTAGCAGCAGGGGTCGATTAGCCATGATGATCACATCGTACAGA
GGTAATATCTTGGACGGAACGCTCCATGGCCGGGGCGAGGCCGAGTACGC
GAATGGCGAGCGCTTCGAAGGGGACTGGGTGCACGGGAAGCGCCACGGAC
AGGGCACCTACACGTATGCGGACGGGAGTGTCTATACAGGAGAATGGGAC
AACGACAAGATCCACGGCAAAGGCGAGTCCCGCTTTGCGAATGGGAATAA
GTACAGCGGCGAGTGGACACAGGGCGTGATCAACGGGAGGGGTACGCTTT
TCATCGCCAATGGGGACAGATACACGGGCGAGTGGCAGGACGGGAAGATG
AATGACATGGTTATGGCATGCGGTCCCGAGGCACTGAGGATCGTCTCAAG
ATGGCTTTGGCCACGCCACGAGAGATACTCTGGACAGGCTCACCTACACG
CGCTCGATCTTCACGATTTGGCCATGATCATCATCACAGGCGTCGGCGTG
TATACCTGCGTTGACGGGGACACGTACGAGGGGGGATGGATGTGTGACAA
GCGGCACGGGCAGGGTGTTATGCTCTATCTCTCCGAAGACGGGGCTACGA
AGGAGAAGTACGAGGGAGAGTGGGAGGAAGACAAAATGCAGGGCAAAGGC
AAGTACTGGTACTCGGACGGCTCTGTGTACGAGGGGCAATGGCAGGAGAG
CAAGATGCACGGCCAGGGGGTTTACACCTATCCTAACCACGACCGATACG
AGGGGGACTTTGTGGAGGACATGAAGCAGGGGCATGGCATCCTCTGCTAC
CGAAATGGGGAGAAGTATGAAGGTTCTTGGAAGCAGGACACGGCCCATGG
AAAGGGAACTCTCACCTACGCAGGGGGGGACAAATATGTAGGGGAGTGGA
GGGAGGGAAAGAAGGAGGGGCTAGGGGCACTGCATTATGTGAACGGCGAC
GTGTTCAAGGGGGAGTGGCGAAAGGACTTCGCCTGCGGGCACGGTGTGCT
GGCTTATATGAACGGAGACGTCTATGAGGGCGAGTGGTTGAACGACCGGC
GGCACGGGCAGGGACGCTTTGTCTGCCGCCAGGACGGAAAGACTTACGTG
GGCGGGTGGAGGGAAGGGAGGAGGCATGGCGGAGGGGTCATGACGCTGGG
GAAGGACGAGAAGGGAGAGGAGGAGGGAGGAGATGTGCTCCGAGGCCAAT
GGGAGCACGGTGTGCTGGTGAATGTCGTGCAGTTTTGCTTCGCCAGGGAC
TCTCCTTGGAATGACCCCAAGTACTGA
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protein sequence of rna5460

>rna5460-protein ID=rna5460-protein|Name=rna5460|organism=Nannochloropsis gaditana|type=polypeptide|length=71bp
MSLSSNACRSVWFYQRFPPHEKARHYLKALTSGHSGYRVKELNIAHRMIS
SCCCSYTCYWIDTPAQLERSP
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mRNA from alignment at CM002465.1:1060260..1060551-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5460 ID=rna5460|Name=rna5460|organism=Nannochloropsis gaditana|type=mRNA|length=292bp|location=Sequence derived from alignment at CM002465.1:1060260..1060551- (Nannochloropsis gaditana)
ATGTCCCTATCATCTAATGCGTGTCGAAGTGTTTGGTTCTACCAACGCTT
CCCTCCGCATGAGAAAGCCCGCCATTACCTCAAAGCCTTGACAAGTGGAC
ATTCAGTTGCATGTTAAGAGACAACACCTCTGTCCAGGAATAAGTTTATC
GGGCGATATCATTTGACTGGGACATTGATAGGGTTATAGAGTGAAGGAAT
TGAACATAGCCCATCGCATGATTTCGTCATGTTGTTGCTCATACACATGC
TACTGGATCGACACGCCTGCGCAGCTTGAGCGGTCACCTTGA
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Coding sequence (CDS) from alignment at CM002465.1:1060260..1060551-

>rna5460 ID=rna5460|Name=rna5460|organism=Nannochloropsis gaditana|type=CDS|length=432bp|location=Sequence derived from alignment at CM002465.1:1060260..1060551- (Nannochloropsis gaditana)
GGTTATAGAGTGAAGGAATTGAACATAGCCCATCGCATGATTTCGTCATG
TTGTTGCTCATACACATGCTACTGGATCGACACGCCTGCGCAGCTTGAGC
GGTCACCTTGAATGTCCCTATCATCTAATGCGTGTCGAAGTGTTTGGTTC
TACCAACGCTTCCCTCCGCATGAGAAAGCCCGCCATTACCTCAAAGCCTT
GACAAGTGGACATTCAGGTTATAGAGTGAAGGAATTGAACATAGCCCATC
GCATGATTTCGTCATGTTGTTGCTCATACACATGCTACTGGATCGACACG
CCTGCGCAGCTTGAGCGGTCACCTTGAATGTCCCTATCATCTAATGCGTG
TCGAAGTGTTTGGTTCTACCAACGCTTCCCTCCGCATGAGAAAGCCCGCC
ATTACCTCAAAGCCTTGACAAGTGGACATTCA
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Synonyms
Publications