rna5458, rna5458 (mRNA) Nannochloropsis gaditana

Overview
Namerna5458
Unique Namerna5458
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1685
Alignment locationCM002465.1:1048482..1051845 -

Link to JBrowse

Properties
Property NameValue
Productguanylate-binding protein
Orig transcript idgnl|cribi|Naga_100089g12.9641.mrna
Orig protein idgnl|cribi|Naga_100089g12.9641
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:1048482..1051845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100089g12gene5273Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25232.1cds5445Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5458rna5458-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5458 ID=rna5458|Name=rna5458|organism=Nannochloropsis gaditana|type=mRNA|length=1685bp
GCGGTACTTCCTTACCATCGTATTCTTGTCTTATTTGAGCCTATTCCACA
GTGATAACAGCATTCTTTCATTACACATATTGAAATTATAAATCTTCGGC
TTTTATCGTTGAAGTTTTCAGTAGAATGATCTCAGAAGTGACGGAGTTTT
CAAGAGATGCTACCGCGATGTCTGAGTACGGAAGTTTTGCGAAGAAAACC
AGAGTCGGAGCTGCAACGGGCGGGCCTGTAGCAAAGTGTCCATCTATCCT
GTCACTCGCTCTTCTCGTGGTCCTCACACTGGGATCATGTAATGCTTTGG
TGTATAAAATCATGTACCAAGTCTATGGTTCTGATGGCGCGTTTTTTGTT
TCGACGGGCGTCAACGTTTTGTACATTATCTACGGCGGGCTTTTGCTGTA
CCCTCGGATGCTTTTCACTGATAGCATCACGCCCGCTATGAAAGCCCTGC
CGAAGCGCCGATTCATAATAATGGGATTCCTCGACTGTTGCGGCACATTT
CTTGCGGCGATGGGTGCCGTCTATACGCCAGGGAGTGTGCAAACCCTCCT
GAACCAGACGCTCATCCCGACCACCATGATCGTCTCAGCCTGCTTCTTGA
GGACACACTTCTCCAACGTCCAATTAGCAGGGGCGGCCCTGGTTCTGATG
GGGGCCGCGGTCACTGTCCTGCCTGCCTTTATCACGGCGGAGAGCGATAG
CAACAATGGGCATGGAGCGAGCCCTTCTCAATCTCGGTGGTACGCGAACC
TGGTCTTTTTCGCCAGCAACCTCCCAGTGGCGTGCTCCCAAGTGTACAAG
GAGAGGGCCTTCAAGCGGGACAGCGTTGATGTCCTGTACCTGACCCAATG
GGTGTCTGTCTTCCAGTTCTTCTTCGGCCTGGCCCTTGCTCCTCTTCAAG
CCCTCCCTGGCATCGGCAGCGCCCACGGCGTCCCTCTCTCCTCCATCCCC
ACCGCATTCCTCGAAAGCTGGGACTGCTTCCTGGAGAAACCCACCTCCGT
GTGTCACGGTCAGTGGCCCGCCCCCTCCCTCCTCCTGCTCGCCTTCTGCG
CAGTCAACCTTGTCTTCAACACGGGAGGACTCTACGTCTCTAAGCACGGC
TCCGCTGTTCTCAACGTGATCACCTACGCGGTTCTTCTCCCCGTGACCAC
CCTCATCTTCTCTTTACGGCCCCTCATGGGTGCCTTCACAGAGCCCCTGT
CGGCGAGCACGGTGTTGGGCTTGCTCCTGGTGCTCCTGGGATTTTATCTC
TATCAAGAGCCAATGCTATGGCTGGGGAGACGCGACCACGGAAAAGGCGT
AGATGGGGGGGACGAAAAGGGTAAGGTGCTCAGGGAAGGACTGAAAGAGG
ACGGAGGGGGAGCGCAGACGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGATGAGGAGGAGCAAGGCACTATGGGCATACACGTGCCTTCCTT
TCAGGAGCGTGTGGTGGCAGGCTTGGGTCCAGCCATCTATCAGGCTCATA
CACAGGGGCATCCCTACCAGTTGGTGCCTCCAATGGTGAATGTAGGGGTC
TCTGATGCTTCCATTTTTAATGTGGAGTGATGGGGAAGTTGTACAGAGCA
TGTAAAGCAACAGGACAGAAACGCAGCGTATACAGCGCTATCACATTTTC
TAAGACGAATCTTATACGACATCTCATTTTGTAAT
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protein sequence of rna5458

>rna5458-protein ID=rna5458-protein|Name=rna5458|organism=Nannochloropsis gaditana|type=polypeptide|length=952bp
MWPLLSVFVLLLLIGASGLSARGITQLRESSPLQNPFQLLAPADASRTSL
VIMEEGIQVLESLEGPVAVVAVVGPYHTGKSFLLNNLVRGLKARRASETD
TGDKVAESEESCLNPDNTTTFGVFEVGKSVDPSTAGVWAYHQRVRLPAQE
AYPSAAPRKEEEIDLLLLDTEGFAVANVSEAYDAQIFAAATVLSSVLVYN
SMHLIDAKELEYLDLLAHNTQLFALKAATHSHTQASEVAVLGPSPSFGLQ
DVFRLPPLLWSVQAFTVDLQGESCTSWLTRLIKSTVLNGHQRRSHLAAPA
EQRLGLDGLFPSVECQTLFLPATSRPSLHRLAALPPSQLSPDFLADVDSL
LTRVLASLQPKTHRSSEAQEGDPAPLPLSGAGLAALLHLVVDGLNQGQLW
SIPSRWSSFSSHLRLSSVRAAVSHFESEVTLGFRNATPPLPAPEMASLVR
RVRREATELVPRLLVGLERGSVREAVREVEAHVRELAYKLTRSNEGQVRG
FLRSTREALLAGDAADADTFQSNGLPVTSSALKDWGKAREEALGATFQAQ
VGPYRDEGKFVTEARELHAQSRLHTEKVREANAEALTQLLSSTESVCLTA
YEASVAAALSPALPPVLPAALESFHLPALANATGACLEGGAAAAFREETK
FKATVASLSKAAVAHYQGLREANSARLDAHCQAARATLLEEVRAALGMGQ
AGEKGIWKGKGKGKTGSADPRTATDEAALEAAVDRADALQKSYPDKVEPF
GVTSECQVHARALEGEVAGLVEEAREEVAAALKAALQVPLQEICKVVVEA
KCPAIYSARGLRATVQGECGKWVRRHDAVGAALSPRMLKRVLLRFIDEEL
GECHAQVKEREVEWRKRWVRLGMTVLVVVSATLVLMLLGAMGKLPAMVME
EGEEGERDGVMSMEGEYEKEGLSGMLGVSSPTLARRRRRSSILGLLSPYK
GK
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mRNA from alignment at CM002465.1:1048482..1051845-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5458 ID=rna5458|Name=rna5458|organism=Nannochloropsis gaditana|type=mRNA|length=3364bp|location=Sequence derived from alignment at CM002465.1:1048482..1051845- (Nannochloropsis gaditana)
CTTGAACCTTGTGGTCGGACTAGGCCACCTTACATCCCGCTTGGTCACCT CCTGACTTCATCAATAATTCATTTTCAACCAGATCCCTCAACCGCGAGCC CAAGCCTACGATGTGGCCTCTTTTATCTGTCTTCGTCCTCCTTCTTCTCA TCGGGGCCTCCGGGCTTTCCGCCAGGGGCATTACACAGCTCAGGGAATCA TCCCCCCTCCAAAATCCTTTTCAATTGCTCGCCCCTGCGGATGCCTCACG CACCAGCCTGGTGATCATGGAGGAGGGCATCCAGGTGCTTGAGTCACTCG AGGGCCCCGTCGCGGTAGTTGCTGTGGTGGGGCCGTACCATACGGGCAAG AGTTTTTTGCTGAACAACCTGGTTCGAGGCCTGAAAGCGCGGCGCGCGTC CGAGACCGACACAGGGGACAAGGTAGCCGAAAGCGAGGAATCATGCCTTA ATCCCGACAATACGACGACGTTCGGAGTCTTTGAGGTGGGAAAATCCGTG GATCCGTCCACAGCGGGGGTATGGGCCTACCATCAGCGCGTGCGCCTTCC GGCCCAGGAGGCTTACCCCTCCGCCGCCCCCCGGAAGGAGGAGGAGATCG ATCTGCTCCTTCTCGACACGGAGGGCTTTGCTGTCGCGAACGTGAGTGAG GCCTACGATGCCCAGATCTTCGCCGCCGCCACCGTACTGAGCAGTGTCTT GGTTTACAACTCTATGCACCTGATCGACGCCAAGGAGCTCGAGTATCTGG ACCTGCTGGCGCACAACACCCAGCTCTTCGCCCTCAAGGCCGCCACCCAC TCCCACACACAGGCCTCAGAGGTTGCCGTTCTCGGCCCCTCTCCCTCCTT CGGACTCCAAGACGTCTTCCGGCTTCCCCCCCTTCTCTGGTCCGTCCAGG CCTTCACGGTCGACCTCCAGGGCGAGAGCTGCACCTCCTGGCTCACGCGC CTCATCAAAAGCACCGTCCTCAACGGGCACCAACGCCGCTCCCACCTTGC CGCCCCCGCGGAGCAGCGCCTGGGCTTGGACGGACTCTTCCCCTCTGTGG AGTGCCAGACTCTCTTCCTCCCGGCCACCTCCCGCCCCTCCCTCCACCGC CTCGCCGCCCTCCCGCCCTCCCAGCTCTCCCCTGACTTCCTCGCGGACGT GGACAGCCTCCTTACCCGCGTCCTCGCCTCTCTCCAACCCAAGACGCACC GAAGCTCCGAAGCCCAGGAGGGCGACCCCGCGCCCCTCCCTCTCTCCGGG GCGGGGCTGGCCGCTCTGCTTCACCTCGTCGTCGACGGCTTGAATCAGGG CCAGCTCTGGAGCATTCCCTCCCGCTGGTCCTCCTTCTCCTCCCATCTTC GCCTCTCCTCCGTCCGCGCCGCCGTCTCCCATTTCGAAAGTGAAGTCACC TTGGGCTTCCGGAACGCCACCCCACCCTTGCCCGCCCCGGAGATGGCGAG CCTGGTCCGCCGGGTGCGCAGAGAGGCCACAGAGCTCGTTCCCCGCCTCC TGGTGGGTTTGGAGCGAGGGAGCGTGCGCGAGGCCGTCCGGGAGGTGGAG GCCCACGTGCGGGAGCTGGCATACAAGCTGACCCGGAGCAACGAGGGACA AGTCCGGGGATTCCTGAGGTCGACCCGCGAGGCCCTGCTCGCGGGCGATG CGGCGGACGCGGACACCTTCCAGAGCAACGGCCTCCCAGTGACCTCGTCC GCCCTCAAGGACTGGGGCAAGGCGAGGGAGGAGGCGCTGGGCGCCACCTT CCAGGCTCAAGTGGGGCCATACCGGGACGAAGGGAAGTTCGTGACCGAGG CGCGGGAGCTCCACGCCCAAAGCCGGCTTCACACGGAAAAGGTCCGAGAA GCGAATGCCGAGGCTCTCACACAGCTCCTGAGCAGTACGGAAAGCGTCTG TCTGACCGCGTACGAGGCCTCCGTGGCGGCCGCCCTCAGTCCCGCTCTCC CCCCCGTCCTCCCGGCCGCCCTCGAGTCTTTCCACCTCCCCGCTCTGGCG AATGCCACGGGGGCGTGCCTGGAGGGGGGGGCCGCGGCGGCGTTCAGGGA GGAAACCAAGTTCAAGGCGACGGTCGCGAGCCTGTCCAAGGCCGCTGTGG CCCATTACCAGGGCCTGCGGGAAGCCAACAGCGCCCGCCTGGACGCGCAC TGCCAAGCGGCCCGGGCGACTTTACTGGAGGAGGTACGGGCGGCGCTGGG CATGGGACAGGCTGGGGAAAAGGGGATCTGGAAAGGGAAAGGGAAGGGGA AGACGGGCAGCGCGGACCCCAGGACGGCCACGGACGAGGCGGCTCTGGAG GCAGCGGTGGATCGAGCGGACGCCCTGCAGAAAAGCTACCCGGACAAAGT GGAGCCGTTTGGGGTGACTAGCGAATGCCAAGTCCATGCGCGCGCGCTGG AGGGAGAGGTAGCAGGCCTGGTGGAGGAGGCGAGGGAAGAGGTGGCGGCT GCGCTGAAGGCTGCCCTGCAGGTGCCGCTGCAAGAGATCTGTAAGGTGGT GGTGGAGGCCAAGTGCCCGGCGATTTACTCCGCCCGCGGCCTTCGCGCTA CGGTGCAAGGCGAGTGCGGTAAATGGGTCAGGAGGCACGATGCCGTGGGG GCCGCGCTCTCGCCCCGCATGCTGAAGCGGGTCCTGCTCCGCTTCATCGA TGAGGAGCTGGGGGAGTGCCACGCGCAGGTGAAAGAGAGAGAGGTCGAGT GGCGAAAGCGATGGGTGCGGTTGGGCATGACAGTTCTGGTTGTCGTCTCT GCCACGCTCGTTCTCATGCTTCTCGGAGCTATGGGCAAGCTTCCAGCGAT GGTGATGGAGGAAGGGGAGGAAGGGGAACGTGACGGGGTGATGAGTATGG AGGGGGAGTACGAAAAAGAGGGATTGAGTGGCATGTTGGGCGTGAGTTCC CCCACCCTGGCTCGACGACGACGTCGCAGTAGTATTCTGGGATTGCTCTC TCCTTACAAAGGTAAGTAGGAGTGAAATATCCGTGGTCACTGTCAATATC TCGTCGAGAAAGAACAACGAGGAGCTGGCATCGGAAAGTCTGGGAAGAGT AATAAAAGCGCAGATTAAATTGAAATGAGGCGAAAAGTTGCATATATTGT CATTGTCAATGTGGCATCAAAACAGTTCGTTCGAGAAAAGGGGAGCACAA TCGACTAGAAAAAAAGTGAATTGTAAGGAGACCAGTGGAAAGCTTTAAGG AATCAAGGGGTGTGTGGTTCAGTGAGTCTGAGTGAAAAAAAATGCTTCTG TCCATTGTAACGTCATGAAATACACTTATTTTTTGCCCCTTCTTGCTTGT TCTGCCTTCGACTTACATTTCAACAAAGCTTATTAAAAAGAAAAACAGCA AGGGAAAGGATGGG
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Coding sequence (CDS) from alignment at CM002465.1:1048482..1051845-

>rna5458 ID=rna5458|Name=rna5458|organism=Nannochloropsis gaditana|type=CDS|length=2859bp|location=Sequence derived from alignment at CM002465.1:1048482..1051845- (Nannochloropsis gaditana)
ATGTGGCCTCTTTTATCTGTCTTCGTCCTCCTTCTTCTCATCGGGGCCTC
CGGGCTTTCCGCCAGGGGCATTACACAGCTCAGGGAATCATCCCCCCTCC
AAAATCCTTTTCAATTGCTCGCCCCTGCGGATGCCTCACGCACCAGCCTG
GTGATCATGGAGGAGGGCATCCAGGTGCTTGAGTCACTCGAGGGCCCCGT
CGCGGTAGTTGCTGTGGTGGGGCCGTACCATACGGGCAAGAGTTTTTTGC
TGAACAACCTGGTTCGAGGCCTGAAAGCGCGGCGCGCGTCCGAGACCGAC
ACAGGGGACAAGGTAGCCGAAAGCGAGGAATCATGCCTTAATCCCGACAA
TACGACGACGTTCGGAGTCTTTGAGGTGGGAAAATCCGTGGATCCGTCCA
CAGCGGGGGTATGGGCCTACCATCAGCGCGTGCGCCTTCCGGCCCAGGAG
GCTTACCCCTCCGCCGCCCCCCGGAAGGAGGAGGAGATCGATCTGCTCCT
TCTCGACACGGAGGGCTTTGCTGTCGCGAACGTGAGTGAGGCCTACGATG
CCCAGATCTTCGCCGCCGCCACCGTACTGAGCAGTGTCTTGGTTTACAAC
TCTATGCACCTGATCGACGCCAAGGAGCTCGAGTATCTGGACCTGCTGGC
GCACAACACCCAGCTCTTCGCCCTCAAGGCCGCCACCCACTCCCACACAC
AGGCCTCAGAGGTTGCCGTTCTCGGCCCCTCTCCCTCCTTCGGACTCCAA
GACGTCTTCCGGCTTCCCCCCCTTCTCTGGTCCGTCCAGGCCTTCACGGT
CGACCTCCAGGGCGAGAGCTGCACCTCCTGGCTCACGCGCCTCATCAAAA
GCACCGTCCTCAACGGGCACCAACGCCGCTCCCACCTTGCCGCCCCCGCG
GAGCAGCGCCTGGGCTTGGACGGACTCTTCCCCTCTGTGGAGTGCCAGAC
TCTCTTCCTCCCGGCCACCTCCCGCCCCTCCCTCCACCGCCTCGCCGCCC
TCCCGCCCTCCCAGCTCTCCCCTGACTTCCTCGCGGACGTGGACAGCCTC
CTTACCCGCGTCCTCGCCTCTCTCCAACCCAAGACGCACCGAAGCTCCGA
AGCCCAGGAGGGCGACCCCGCGCCCCTCCCTCTCTCCGGGGCGGGGCTGG
CCGCTCTGCTTCACCTCGTCGTCGACGGCTTGAATCAGGGCCAGCTCTGG
AGCATTCCCTCCCGCTGGTCCTCCTTCTCCTCCCATCTTCGCCTCTCCTC
CGTCCGCGCCGCCGTCTCCCATTTCGAAAGTGAAGTCACCTTGGGCTTCC
GGAACGCCACCCCACCCTTGCCCGCCCCGGAGATGGCGAGCCTGGTCCGC
CGGGTGCGCAGAGAGGCCACAGAGCTCGTTCCCCGCCTCCTGGTGGGTTT
GGAGCGAGGGAGCGTGCGCGAGGCCGTCCGGGAGGTGGAGGCCCACGTGC
GGGAGCTGGCATACAAGCTGACCCGGAGCAACGAGGGACAAGTCCGGGGA
TTCCTGAGGTCGACCCGCGAGGCCCTGCTCGCGGGCGATGCGGCGGACGC
GGACACCTTCCAGAGCAACGGCCTCCCAGTGACCTCGTCCGCCCTCAAGG
ACTGGGGCAAGGCGAGGGAGGAGGCGCTGGGCGCCACCTTCCAGGCTCAA
GTGGGGCCATACCGGGACGAAGGGAAGTTCGTGACCGAGGCGCGGGAGCT
CCACGCCCAAAGCCGGCTTCACACGGAAAAGGTCCGAGAAGCGAATGCCG
AGGCTCTCACACAGCTCCTGAGCAGTACGGAAAGCGTCTGTCTGACCGCG
TACGAGGCCTCCGTGGCGGCCGCCCTCAGTCCCGCTCTCCCCCCCGTCCT
CCCGGCCGCCCTCGAGTCTTTCCACCTCCCCGCTCTGGCGAATGCCACGG
GGGCGTGCCTGGAGGGGGGGGCCGCGGCGGCGTTCAGGGAGGAAACCAAG
TTCAAGGCGACGGTCGCGAGCCTGTCCAAGGCCGCTGTGGCCCATTACCA
GGGCCTGCGGGAAGCCAACAGCGCCCGCCTGGACGCGCACTGCCAAGCGG
CCCGGGCGACTTTACTGGAGGAGGTACGGGCGGCGCTGGGCATGGGACAG
GCTGGGGAAAAGGGGATCTGGAAAGGGAAAGGGAAGGGGAAGACGGGCAG
CGCGGACCCCAGGACGGCCACGGACGAGGCGGCTCTGGAGGCAGCGGTGG
ATCGAGCGGACGCCCTGCAGAAAAGCTACCCGGACAAAGTGGAGCCGTTT
GGGGTGACTAGCGAATGCCAAGTCCATGCGCGCGCGCTGGAGGGAGAGGT
AGCAGGCCTGGTGGAGGAGGCGAGGGAAGAGGTGGCGGCTGCGCTGAAGG
CTGCCCTGCAGGTGCCGCTGCAAGAGATCTGTAAGGTGGTGGTGGAGGCC
AAGTGCCCGGCGATTTACTCCGCCCGCGGCCTTCGCGCTACGGTGCAAGG
CGAGTGCGGTAAATGGGTCAGGAGGCACGATGCCGTGGGGGCCGCGCTCT
CGCCCCGCATGCTGAAGCGGGTCCTGCTCCGCTTCATCGATGAGGAGCTG
GGGGAGTGCCACGCGCAGGTGAAAGAGAGAGAGGTCGAGTGGCGAAAGCG
ATGGGTGCGGTTGGGCATGACAGTTCTGGTTGTCGTCTCTGCCACGCTCG
TTCTCATGCTTCTCGGAGCTATGGGCAAGCTTCCAGCGATGGTGATGGAG
GAAGGGGAGGAAGGGGAACGTGACGGGGTGATGAGTATGGAGGGGGAGTA
CGAAAAAGAGGGATTGAGTGGCATGTTGGGCGTGAGTTCCCCCACCCTGG
CTCGACGACGACGTCGCAGTAGTATTCTGGGATTGCTCTCTCCTTACAAA
GGTAAGTAG
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Synonyms
Publications