rna5455, rna5455 (mRNA) Nannochloropsis gaditana

Overview
Namerna5455
Unique Namerna5455
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2635
Alignment locationCM002465.1:1043022..1043524 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100089g8.9647.mrna
Orig protein idgnl|cribi|Naga_100089g8.9647
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:1043022..1043524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100089g8gene5270Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5455rna5455-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25238.1cds5442Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5455 ID=rna5455|Name=rna5455|organism=Nannochloropsis gaditana|type=mRNA|length=2635bp
ACATTCAGCCATCGTGGCGTTCATTACTTGCCTCCCGTCTAACTCCCTGC
GTACTCCTTGGCGGCCTCCTCAGCAGCATCCAAGCTCGCACGCCTCCTCC
CGTGCCATTTTGTCCTTGTCCCCTCTTCACGCGCCGGTGGTGCCGCTATC
GGCAACCTTTTCTCCACAACGCGCGATTAGAATGAAGCTGATTCAGTACT
TCGGCACGGCCCTCTGCGTTGTCATCCTAAGCTGCGTCACCAACATTATA
CCAGGAGGAAGGATTGCATTAGGACGACCCTTCTCGCGGCTTTTTGGAGG
CTCTTCGCGCAACTTGAGGGCGGAGGTGGAGGCAGCTGTTCCTCATTTTA
TCGTGCCGGAGGATCGCGTTGAGTACCCAACTCCCAAGCTCGCCGCGCTG
AAGAGCAAGCTGAAAGAAATCGGGCACCACAAAGCCATGGGCCACCCCCA
CCAGCACCAGGGCCTGGATGGCCGCCGCCGCGTCTCTCTCCACCCGAGCC
ATCGCCCTGCCCCCTCTTCTTTGGGTGCGGCGGAAGACAAGGAGCAGGAG
GAGGAGGGAGGGGAAGAAGAGGAGGAGGGGCAGGAAGGGGTCATAGCCCC
TCCTGCGTGGAAACCGGGGCACATGAATCCCAGAGACAGCAGCAGCGACA
TGGGAAAGGCCACAAAGGGCAAGCCGGGCACTCCTTCTGCTTTCCTCCCT
CTGGGTGTCCCACCCCCTTCCCTCTTCCCCCCCAGCGCGCGGCCCATCAG
GCGCTCCCCGTGGTCCCTCCTCTTCCGCCGAGGATTGCCTCGACCCCGGC
GGAAACGCCCCATCGGCATCAACCGCATTAAGACGCTCCCCCCCAGTGTC
ACCCCTCTCATCGCCATCGTCAACAGCAAGAGTGGAGGCCGGCAGGGCAA
GAATCTCTTCAAGCGCCTTAGAGCGGCCCTGAGCCGAGCCCAGGTCTTCG
ACATCCAGAAGGTTGACCTGAAGGAGGCCCTGTCCCTCTACTGCCACCTC
CCCAACAGCTGTACGCTCCTCGTCTGCGGGGGAGACGGCACGGCCTCCCG
TGTGTTCGAGGTCGTGGACGGCATGGAGTGGAAGCACGGCCCTCCCAAAA
TCGCCATCGTCCCCCTGGGCACCGGCAACGATATCGCCCGAGTCTTGGAC
TGGAATCTTGGTCACGATTGGTCGGGCGGTTACTTCCCATGGAGTAACGA
TGCCGCCGATGCCAACCTCCTAAGCGTCTTTTCGGACTTGACCCGCGCCA
TGGAGAGGAAGATGGATCGATGGGAATTGCGCATGACAGAGGCCGTCCCC
TCCTCGGACCGGCACAGACAGCCGGTCAAGTACATGCTGGGGTATTTGGG
CATCGGGGTGGACGGGAAGGTCGCCCTCGACTTCCACAAGCTCCGCGACC
GCGCCCCCTACCTCTTCCTGTCCCCCACCCTCAACAAGTTCTACTACGCC
CTGATGGGTCTTCGGGACTTTTTCGTCCGGTCCTGCAAGAACCTGCCGGA
CAAGGTTGAGCTCTGGTGTGATGGGAAGCCCATCGTGCTGCCCCCCCAGA
CCGAGTCCTTCATCGTCCTCAACATCAATTCCCATGCGGGGGGCGTGGAG
CTCTGGCCCGAGTATCTCATGGGCGGAGGGATGGAGGGCGCCTTTAAGCC
TTCGCGCTTTGACGACGGGTATTTGGAGGTGGTGGCCATTTCAGGCGTGC
TGCACCTCGGAAGGATACGGGTTGGTTTGGATCGACCGCTTCGACTGGCG
CAAGCAAAGGAAGTACGGATCAGGACAAAGAGCTTCTTGCCGGGGCAGGT
GGATGGAGAGCCCTGGCGGCTTCCACGCTGCGAGCTCACGTTGCGGCACA
ACGGGCAGGCGCCTGTCCTCCAGCACGTGAGCAAGGAGCTTCTGCAGTAC
AATGAGTGGCTGGTGGGTCAAGGGAAACTGGATGCGGCCGGTAAAGACCA
GCTCCTTCAAGCCTTCAAGCGTCGGCTCCAGGTGTCGCAATGAGCCGGAG
ACTATGTAGGATGTGCCGGGCGCTTCCTCTCGGCAAGGTTGGAGAAAAGC
TGGAACGGAGGTCGTGCTAATTTGGCTTTAGGCGATCAACCTTCCTTTTT
TCTCAGCTAGAGCGAAGCATTCAGCGAGCACGGTGTTCATGCATTGAGGG
GGATGGAGGCTACGAAGTTATTTAGAAATCGAGGCAAAAAGAAAGTTGCC
TGGCCGTGTGTTAGATCTGTGTGGTGACCGAGCCCAAAAAAGAAGTGCGA
AGGAACGTCGGTATAGACTTCCTTTTGCTTTTGCTTCGGCGTTCCAAGGT
CCCTTACCGAAGAGGGCATGAGTCAATCTCTAGTGATGAGATGGGACCAG
AAAACACGTATAACTATGTATGGATATGTACAGGTAGTTTGAACGCGAGT
GTCAACCACTGAGCGTATAAAGAGGTTTTAGACTTGTGAAAGCAATGCCA
CACCGTAAAAAAGAACTCTAATCTGAAATACTAGGCGAGCTTGACTTCTG
TGATTCGAAGACATCACTTGATGTATGGTTACATCTATTCTGTGAGTGTT
ATGGCCTACAAATCAAGCCATCAACTTGATCTCTCCGAGTCGAGAGAAGG
TGTCGGCGCTGTGAAGAAACCGAAGATAACACCTC
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protein sequence of rna5455

>rna5455-protein ID=rna5455-protein|Name=rna5455|organism=Nannochloropsis gaditana|type=polypeptide|length=112bp
MPNAERSCLGCFVHDSRVFNAKWAAAASLLFSSISQFIETKLRLHQRSVC
SICIYRFKMIARVDHFTKSLTRNKPHQEFWKPMHHMGNKRCYLRFLHSAD
TFSRLGEIKLMA
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mRNA from alignment at CM002465.1:1043022..1043524-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5455 ID=rna5455|Name=rna5455|organism=Nannochloropsis gaditana|type=mRNA|length=503bp|location=Sequence derived from alignment at CM002465.1:1043022..1043524- (Nannochloropsis gaditana)
ATGCGTCAAAGGAAACATTGCCTTCCACGCTCTTCGCACGCGCCTTTCGA
GTACATAAGTTAAAACTCATCACAACTATGATCAATTCTACTAGCAAATG
CAGAAAGAAGTTGTTTGGGTTGTTTTGTGCATGACAGTCGCGTCTTCAAC
GCGAAGTGGGCTGCAGCTGCCTCCCTGCTTTTCTCAAGCATAAGTCAATT
TATAGAGACTAAGCTCCGTCTCCATCAACGCTCAGTGTGTAGCATTTGCA
TCTACAGATTCAAGATGATTGCACGGGTGGACCATTTTACGTGAAGCTAC
CTGCCACGGCAACAACAGCACCGTCAGAAAGCTTTTTGAAAAGAGGTCTC
ATATATTTTGCAAGCAAGTCATTAACAAGGAATAAACCTCATCAAGAATT
TTGGAAACCGATGCATCACATGGGGAACAAGAGGTGTTATCTTCGGTTTC
TTCACAGCGCCGACACCTTCTCTCGACTCGGAGAGATCAAGTTGATGGCT
TGA
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Coding sequence (CDS) from alignment at CM002465.1:1043022..1043524-

>rna5455 ID=rna5455|Name=rna5455|organism=Nannochloropsis gaditana|type=CDS|length=1017bp|location=Sequence derived from alignment at CM002465.1:1043022..1043524- (Nannochloropsis gaditana)
CAAGTCATTAACAAGGAATAAACCTCATCAAGAATTTTGGAAACCGATGC
ATCACATGGGGAACAAGAGGTGTTATCTTCGGTTTCTTCACAGCGCCGAC
ACCTTCTCTCGACTCGGAGAGATCAAGTTGATGGCTTGACAAATGCAGAA
AGAAGTTGTTTGGGTTGTTTTGTGCATGACAGTCGCGTCTTCAACGCGAA
GTGGGCTGCAGCTGCCTCCCTGCTTTTCTCAAGCATAAGTCAATTTATAG
AGACTAAGCTCCGTCTCCATCAACGCTCAGTGTGTAGCATTTGCATCTAC
AGATTCAAGATGATTGCACGGGTGGACCATTTTACATGCCAAGTCATTAA
CAAGGAATAAACCTCATCAAGAATTTTGGAAACCGATGCATCACATGGGG
AACAAGAGGTGTTATCTTCGGTTTCTTCACAGCGCCGACACCTTCTCTCG
ACTCGGAGAGATCAAGTTGATGGCTTGACAAATGCAGAAAGAAGTTGTTT
GGGTTGTTTTGTGCATGACAGTCGCGTCTTCAACGCGAAGTGGGCTGCAG
CTGCCTCCCTGCTTTTCTCAAGCATAAGTCAATTTATAGAGACTAAGCTC
CGTCTCCATCAACGCTCAGTGTGTAGCATTTGCATCTACAGATTCAAGAT
GATTGCACGGGTGGACCATTTTACATGCCAAGTCATTAACAAGGAATAAA
CCTCATCAAGAATTTTGGAAACCGATGCATCACATGGGGAACAAGAGGTG
TTATCTTCGGTTTCTTCACAGCGCCGACACCTTCTCTCGACTCGGAGAGA
TCAAGTTGATGGCTTGACAAATGCAGAAAGAAGTTGTTTGGGTTGTTTTG
TGCATGACAGTCGCGTCTTCAACGCGAAGTGGGCTGCAGCTGCCTCCCTG
CTTTTCTCAAGCATAAGTCAATTTATAGAGACTAAGCTCCGTCTCCATCA
ACGCTCAGTGTGTAGCATTTGCATCTACAGATTCAAGATGATTGCACGGG
TGGACCATTTTACATGC
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Synonyms
Publications