rna545, rna545 (mRNA) Nannochloropsis gaditana

Overview
Namerna545
Unique Namerna545
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2108
Alignment locationCM002455.1:1365411..1365993 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100541g1.960.mrna
Orig protein idgnl|cribi|Naga_100541g1.960
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1365411..1365993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100541g1gene526Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna545rna545-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30123.1cds545Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna545 ID=rna545|Name=rna545|organism=Nannochloropsis gaditana|type=mRNA|length=2108bp
TCCTCAACGAAAATGTGGCTCTCTTTCCGACTTGGATGGATACTACATCA
AAAAATGCGTCCTCACGCACACAGTGCGTACACATGTGCAACATTTCATC
CGTAGAAGGGTCACAGAGGACGTGATGGATCTTAATCGTGCCTTAGTATT
GGTCTTTGGTGGGCAGATATGGTTGTAGCAAGGACCACGTTTCAGGGGGG
GCCCTGCGACACGGTAGCCTGTTCACAGTTTCATGAAATATTCTTCCTGA
TTATGTCACAGGCATAGGAACATCGTCCATGGCCACCCATCGGCAGGACT
TTCCCCACCTTGTTATCAACAGAGACTCACCGGCACACGCGCGAAACATT
GTGGAAAAGAGCCGGGGCTTGGAAGGTAATACGGAGGAAGCGAGCACGAC
GGACGCAGAGCCGTCCCCGGCACAGCAATTTGTGTCTTTGCAGCGGGAGA
ATATGCACCTGCGTGAGCAAGTCCAAGCCTTGAACGAGGAAGTGGCGGTG
TTAAAGGGGAAACTTGGTGGGCGGCAGAACGGGCATGGAGGCGTTGCCGA
GTCGCAGGGGAAAGAAGCCGAACGCGCCTTATTAGTAGCCCATCCACCCA
CTTCCCAAGTCGTGGCACTGGAAGCACAGCTACAAGCGTCGCAGTCGGAG
AAGAAATATTTCCAGGCTTTGATCGAGGAGAAACAGGGCGTCATTGCTCG
GTTGCAAAAACGCGTGGAAGAGCAAGACAAGACCCCCCATGCCTCGGCGG
GCCTCGGGTCTCGGATGGGCCCATGGCCCGGCGGCTTTGACGATGGTGGA
GAGGGGAGAGGCGCCAGAGAGGAGAGGCTTGCAAGGGCTGCCACAGAGGC
CGTGGCGGAAGTAAGCCAAGGTGCCCACGGGGAGGGCGGGAAAGCGGGCG
GGAGGAGTGTGGAAGCCCCTCATGTCGCAGGGAGGAATGCGGGTACCCGC
GAGCAAGTCGAGCCTGTTGATGTCAGGACCTTCGAGTCGCGAGCCGAGTC
CATGACCTGCCCGCCCTTGTCCATCGTGGGCGTCGGCCGAGAAGGAGCAA
CGGGAGGAGGGACCGACCCAGGGCGGGGGGGAGGGCGGGAGGGAGGAAGG
GGGGAAGGAGACAGGGCACACGAGCTCTTGTCGTTGGAGGGAAGGGACAT
TCTGACCGACGAATTATACGAGGAGATGCAACGGCATGAATACAACCATC
CCCGCCTCATAATCCGCGCCTGTTTGGACTGCCTCGTTCCGTTGTTTAAG
GTGCCTTCAACCGCGGGAGCCTTGGCGGATTTTCGCGCCTTTTTTGAAGG
GCAAAGGTCGATCCACACCCGGGCAGAGGAGGTGTTGGGAAACCTGCGGA
AGGGTGAGGGGATGAGTGCGCCGGAGCTGGACTGCTTGCAACGGATTTTT
GAAGTGGTGGTGCCACCGGCTGCCCGGGTACCAAGGGAGGAAGGGGTGAT
GAGATTGGAAGGAGAGGGGCAGAGGGACGAGGAGGTTCGGAGGGGCGGGA
GTGCCCAAGCTGGGGTGCGGCGTCGGCGGAAGGATTTCATGCGGGAACTG
GTGACGGCCATGAACGCCTTCCACGGGATAAAAAACAAAAAGCCCGACCT
GGCGTACATGTGTGCCCGGGCAGGGGTGGAAGCGCGGGGTTTGGACACGG
TGGAAGCCTTGCAAAGCGGATTGAAGGACCACGTCGCCCTCCAACAGGCA
TTCGTCCAGATTTGTGCGGCCATGCCTCCGGGACAGCTGTCGTGCAACCG
TCGGTACGTGGCCCGAAAATTGTTCGAGTTTTGCGGGTTGGATGCGAGTG
TCTTGGTGGCGAAGAAAGGTTTGCAAGGGCGGAAGCCCCCGAGCCGGAAG
GGAATGCGGAGTGGAGAAGGAGGAGGAGGGAGGAAGAGGAAGGTAGAGGC
GTTGGAGGAATTGGTGCGTGTGGACCGGCCACGACGGCAGCGCAAACGGC
GGCGATGGTGGGGAGAGGAGGAGGAGGAGGATGGGGGAGGAGGAGGAGGA
GGAGGAGGGACGGAAGGAGGGCAAAGGGGAGAGGAAGGGGAGGGAGGGAG
GGAGGGAGGACGAGGACGAGGAGGAGAGCCTGCGAATTTCGACAGCGAGC
GAGGATGA
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protein sequence of rna545

>rna545-protein ID=rna545-protein|Name=rna545|organism=Nannochloropsis gaditana|type=polypeptide|length=172bp
EEEEEKKEEEEEEGGPMREREEGTEPSRVKDAGGERGGAMAGGEGGKREE
GGNEERGNVVGQKEKVGPKKEGKSPEDEGGEGVAHVGKEEILRRTEEVKT
AENRGPRGPVMGPEGPRASVVAGGEGAKSLEGGTLGPRGLPGREAETEPR
PAAMTNGAGEGGGGGGLRRQIL
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mRNA from alignment at CM002455.1:1365411..1365993+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna545 ID=rna545|Name=rna545|organism=Nannochloropsis gaditana|type=mRNA|length=583bp|location=Sequence derived from alignment at CM002455.1:1365411..1365993+ (Nannochloropsis gaditana)
gaggaggaggaggagaaaaaggaggaggaggaggaggagggagggccaat
gcgagaaagggaggagggaacggagCCAAGCCGGGTGAAGGACGCCGGag
gtgagcgaggaggggccatggccgggggggagggagggaagagagaggag
gggggaaacgaggagagaggaaacgTGGTGGGAcaaaaggagaaagtggg
acccaaaaaagaaggaaaatcccctgaggacgaggggggggaaggggtgg
cgcacgtcgggaaggaggagatacTGAGGCGGACGGAGGAGGTCAAGACG
GCGGAGAATCGAGGGCCACGTGGGCCGGTGATGGGACCGGAAGGCCCGCG
CGCGTCCGTGGTTgccggtggagaaggcgcgAAGtcgttggagggaggaa
cccTAGGGCCAAGGGGGCTGCCTGGAAGGGAGGCCGAGACAGAACCACGG
CCGGCGGCCATGACAAatggagcgggggagggagggggagggggagggct
ccGAAGGCAAATATTGTAGCGGGGTGAATGATGAttaaggaggagggagg
agaattTCGGAGGGGATCAGATgggcagcaggg
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Coding sequence (CDS) from alignment at CM002455.1:1365411..1365993+

>rna545 ID=rna545|Name=rna545|organism=Nannochloropsis gaditana|type=CDS|length=519bp|location=Sequence derived from alignment at CM002455.1:1365411..1365993+ (Nannochloropsis gaditana)
gaggaggaggaggagaaaaaggaggaggaggaggaggagggagggccaat
gcgagaaagggaggagggaacggagCCAAGCCGGGTGAAGGACGCCGGag
gtgagcgaggaggggccatggccgggggggagggagggaagagagaggag
gggggaaacgaggagagaggaaacgTGGTGGGAcaaaaggagaaagtggg
acccaaaaaagaaggaaaatcccctgaggacgaggggggggaaggggtgg
cgcacgtcgggaaggaggagatacTGAGGCGGACGGAGGAGGTCAAGACG
GCGGAGAATCGAGGGCCACGTGGGCCGGTGATGGGACCGGAAGGCCCGCG
CGCGTCCGTGGTTgccggtggagaaggcgcgAAGtcgttggagggaggaa
cccTAGGGCCAAGGGGGCTGCCTGGAAGGGAGGCCGAGACAGAACCACGG
CCGGCGGCCATGACAAatggagcgggggagggagggggagggggagggct
ccGAAGGCAAATATTGTAG
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Synonyms
Publications