rna5444, rna5444 (mRNA) Nannochloropsis gaditana

Overview
Namerna5444
Unique Namerna5444
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1119
Alignment locationCM002465.1:1008421..1009577 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101074g1.3866.mrna
Orig protein idgnl|cribi|Naga_101074g1.3866
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:1008421..1009577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101074g1gene5263Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5444rna5444-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25242.1cds5431Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5444 ID=rna5444|Name=rna5444|organism=Nannochloropsis gaditana|type=mRNA|length=1119bp
GAGGACTCCGACCAAGGAATGTCTATTTTCTACGCACACCCGCACACCGA
GTCAAAACTTAGATGGCTGCTACTGCTGCAGATGGAGAGTGGATCGATGT
CAGCGGAGATGGAGGATTGCTTAAAAAGATATTAAAGGAAGGAGAAGGTG
AATCACCGCCGGATGGAAACGAGGTCGTAGCGCACTACACGGGCACTCTG
GAAAGCGATGGGACTGAATTCGATTCCTCCCGGAAGCGCAATCAGCCGTT
CAAGTTCACGATCGGGCTAGGGCAGGTGATCAAAGGCTGGGACCTCGGTT
TTGCGACCATGAAGGTCGGGGAACACGCGATCCTGAAGTGTCGAGAGGAC
TACGGATATGGGGAGAGCGGCAGCCCGCCCACCATTCCTCCCAAAGCCAC
CCTGTGCTTCGACGTGGAGCTCCTCTCTTTCGCGCCCAAAAAGAAGGAGA
AGTGGGAGATGTCGGCAGAAGAGCGGATGGCCGAGGCTTTGAAATTGAAA
GAGGGTGCCGCCGGTCATTTCAAGGAGCAACGATGGGGCGATGCGGCCTC
TGAATACATGGACGCGGCTTCTTACGTGGATGGGCTGCATGTAGGAGGGA
GGGAAGGAGGAGGGAGGGAGGGGGGGCGGGAATGGATGAAGAAAGGCGGG
GAGAGGAATGTAGTGTGAGGGGCGATGGATAGGGTGCTGTTTGAAATGTA
GGGAGACGCGAATGAGAGTTTGGCGTTTTAGTAACCAATTCCTGATAAGG
ATGCATACACTTTACTGTTAACTCCATGCTGACGATGACCCGCCCTTTCC
TCCTTCCTGTCTCTGTCCCTCCCTCCCTCCCCTCCCTTTTCTGCATCTTC
CTCCCCTCTTTCGCTCCCCACCCTCGGGTCCTGGACTAGGAGGATGACCC
CACGGTCGGAGAAACGAAGCGGGTGCCTTGGCGGTGAGCAACGCCGCATT
GGCCTTCTTGAAAGCGCAGGTAATGCGTCCGGACCATCCCCCGTCGGTCA
AAAGGCTGGGGCGGAGGCACTGAATGAGGCTACCCGAGTAGAAAGGGAGG
CATTGGGCAATACAACCGACTCAGCCGTGGACCCCATTGTGCCTTGGCTT
TGTGACTGTCTCCTTATCC
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protein sequence of rna5444

>rna5444-protein ID=rna5444-protein|Name=rna5444|organism=Nannochloropsis gaditana|type=polypeptide|length=199bp
MTSQIGSPPAKEEGLLDVGEVDMEGKEEATGIPLPPPLPPPSPPVDPLIS
VRLPSPSEQHGRMGVPGHESLEARSDPPFPPSTPPSAHSPHSLPVLPPRV
PSYATAPSFSPAPSFSFPPSLPSFQLPSPGGQEEEDQEGHDFEREVRLSR
VQEGRKGQEKARARTTSLVRRRSSECAEVEEACVEDEDEGGTGEDAEEG
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mRNA from alignment at CM002465.1:1008421..1009577+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5444 ID=rna5444|Name=rna5444|organism=Nannochloropsis gaditana|type=mRNA|length=1157bp|location=Sequence derived from alignment at CM002465.1:1008421..1009577+ (Nannochloropsis gaditana)
CCATGGCCTCCTTGTTCAATCGCGTCCTGGAGAGGCTTGATTCGGCGTTG
GAGACCTTAAATAGTACCGGTGTtaacggagaggaggaggaggaggagga
agaggaagaggaggaagaggaaaaggagagggcgggggaagaggaacaag
TGGATCAACccgacgggaggaaaagggaataCGCAGACAGCAGCCAGGcg
tggaaaggaaaaatctGGGGCGTCAGAGACGGACAAGAAAAGCGACAGGA
CTCTGCATTACAAAAGTCTGTCTCTGCCGCCACCTGTTGGAATGAGGAGA
GTGGAACCCCCCAGTTTCTACCTGCTCCATCGCTTCCCATCACAGGTGGA
CCCACACCTATTCCGCCCCCAGAAGGGGAAGATAGGATGACGGCGTCCGT
CAGGTCATCAGAGCGCTCTTCCTGTTTAGGAGCTGGGGCCACGACGGAGC
ATATAGGCCGGagtgaaggggggagaggggaggaggaggagggaggaaag
ccaaggaggaggaggaggaggagaaaagcacgcaggaagggaaacggCGA
TCTATGGACAAATGACTAGCCAGATTGGATCCCCgccggcaaaggaggaa
gggttaCTTgatgtgggggaggtggatatggagggaaaggaggaagcgac
gggcatccctctccctccacctctacctcctccttcacctcccgtAGACC
CCTTGATTTCAGTCaggctcccttccccgtctgAGCAGCATGGGCGTATG
GGGGTACCGGGCCACGAGTCATTGGAGGCGAGGAgtgaccctcccttccc
gccctccacccctccctccgcccactcgcctcactccctccccgtgctaC
CCCCACGCGTACCTTCCTATGCCACTgcgccttccttttctcccgcacct
tctttctccttccctccctctctgccttcgTTCCAGCTTCCATCGCCGGg
tggacaagaggaggaggaccaggaggggCATGACTTTGAGCGGGAAGTTC
GGCTTTCACGGGTtcaggagggacggaaaggacaggaaaaggcgagAGCT
CGCACTACGTCCTTGGTACGGCGGAGGAGTAGCGAATGTGCGGAAGTAGA
GGAGGCctgcgtggaggacgaggatgagggaggaacgggggaggacgccg
aggaggg
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Coding sequence (CDS) from alignment at CM002465.1:1008421..1009577+

>rna5444 ID=rna5444|Name=rna5444|organism=Nannochloropsis gaditana|type=CDS|length=596bp|location=Sequence derived from alignment at CM002465.1:1008421..1009577+ (Nannochloropsis gaditana)
ATGACTAGCCAGATTGGATCCCCgccggcaaaggaggaagggttaCTTga
tgtgggggaggtggatatggagggaaaggaggaagcgacgggcatccctc
tccctccacctctacctcctccttcacctcccgtAGACCCCTTGATTTCA
GTCaggctcccttccccgtctgAGCAGCATGGGCGTATGGGGGTACCGGG
CCACGAGTCATTGGAGGCGAGGAgtgaccctcccttcccgccctccaccc
ctccctccgcccactcgcctcactccctccccgtgctaCCCCCACGCGTA
CCTTCCTATGCCACTgcgccttccttttctcccgcaccttctttctcctt
ccctccctctctgccttcgTTCCAGCTTCCATCGCCGGgtggacaagagg
aggaggaccaggaggggCATGACTTTGAGCGGGAAGTTCGGCTTTCACGG
GTtcaggagggacggaaaggacaggaaaaggcgagAGCTCGCACTACGTC
CTTGGTACGGCGGAGGAGTAGCGAATGTGCGGAAGTAGAGGAGGCctgcg
tggaggacgaggatgagggaggaacgggggaggacgccgaggaggg
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Synonyms
Publications