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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_101074g2.3867.mrna |
| Orig protein id | gnl|cribi|Naga_101074g2.3867 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:1005913..1008091 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5443 ID=rna5443|Name=rna5443|organism=Nannochloropsis gaditana|type=mRNA|length=1487bp
ACATGCAGGCGGGAGGACTCCGACCAAGGAATGTGCGTGCGTTTTGGCAG
GGTATTGCCATACTCTGCCCGCTTTCAGGCGGCGTGGTGGGGAGATTCCG
TGCATTGTGTGCTTGGTTTTAGGGAATGAAACCTCAGAGCAGAGAATGAT
ACGATCGCTTGGAACAAGTTTTCCTTACCCCACCCCTGGTTATGTCTCGA
AAATGTGGGATGAAAAATTTAGTAAAGGACAAAATGATTATCTCTGTTAT
GTTGTCTGCACGATCCGTGATGCATTTTCCTATATTTTTTTGTCTTTGAT
CCCACATTTACATCTGTCTACCTCCCCCATTTCGTGCTGTCTCTGGAAAG
TTCTATTCACCAATCCTCATTGCTCTTTTTCTCCTCAGGTCTATTTTCTA
CGCACACCCGCACACCGAGTCAAAACTTAGATGGCTGCTACTGCTGCAGA
TGGAGAGTGGATCGATGTCAGCGGAGATGGAGGATTGCTTAAAAAGATAT
TAAAGGAAGGAGAAGGTGAATCACCGCCGGATGGAAACGAGGTCGTAGCG
CACTACACGGGCACTCTGGAAAGCGATGGGACTGAATTCGATTCCTCCCG
GAAGCGCAATCAGCCGTTCAAGTTCACGATCGGGCTAGGGCAGGTGATCA
AAGGCTGGGACCTCGGTTTTGCGACCATGAAGGTCGGGGAACACGCGATC
CTGAAGTGTCGAGAGGACTACGGATATGGGGAGAGCGGCAGCCCGCCCAC
CATTCCTCCCAAAGCCACCCTGTGCTTCGACGTGGAGCTCCTCTCTTTCG
CGCCCAAAAAGAAGGAGAAGTGGGAGATGTCGGCAGAAGAGCGGATGGCC
GAGGCTTTGAAATTGAAAGAGGGTGCCGCCGGTCATTTCAAGGAGCAACG
ATGGGGCGATGCGGCCTCTGAATACATGGACGCGGCTTCTTACGTGGATG
GGCTGCATGTAGGAGGGAGGGAAGGAGGAGGGAGGGAGGGGGGGCGGGAA
TGGATGAAGAAAGGCGGGGAGAGGAATGTAGTGTGAGGGGCGATGGATAG
GGTGCTGTTTGAAATGTAGGGAGACGCGAATGAGAGTTTGGCGTTTTAGT
AACCAATTCCTGATAAGGATGCATACACTTTACTGTTAACTCCATGCTGA
CGATGACCCGCCCTTTCCTCCTTCCTGTCTCTGTCCCTCCCTCCCTCCCC
TCCCTTTTCTGCATCTTCCTCCCCTCTTTCGCTCCCCACCCTCGGGTCCT
GGACTAGGAGGATGACCCCACGGTCGGAGAAACGAAGCGGGTGCCTTGGC
GGTGAGCAACGCCGCATTGGCCTTCTTGAAAGCGCAGGTAATGCGTCCGG
ACCATCCCCCGTCGGTCAAAAGGCTGGGGCGGAGGCACTGAATGAGGCTA
CCCGAGTAGAAAGGGAGGCATTGGGCAATACAACCGACTCAGCCGTGGAC
CCCATTGTGCCTTGGCTTTGTGACTGTCTCCTTATCC back to topprotein sequence of rna5443 >rna5443-protein ID=rna5443-protein|Name=rna5443|organism=Nannochloropsis gaditana|type=polypeptide|length=201bp
MAATAADGEWIDVSGDGGLLKKILKEGEGESPPDGNEVVAHYTGTLESDG
TEFDSSRKRNQPFKFTIGLGQVIKGWDLGFATMKVGEHAILKCREDYGYG
ESGSPPTIPPKATLCFDVELLSFAPKKKEKWEMSAEERMAEALKLKEGAA
GHFKEQRWGDAASEYMDAASYVDGLHVGGREGGGREGGREWMKKGGERNV
V back to topmRNA from alignment at CM002465.1:1005913..1008091- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5443 ID=rna5443|Name=rna5443|organism=Nannochloropsis gaditana|type=mRNA|length=2179bp|location=Sequence derived from alignment at CM002465.1:1005913..1008091- (Nannochloropsis gaditana)
GAGGACTCCGACCAAGGAATGTGCGTGCGTTTTGGCAGGGTATTGCCATA
CTCTGCCCGCTTTCAGGCGGCGTGGTGGGGAGATTCCGTGCATTGTGTGC
TTGGTTTTAGGGAATGAAACCTCAGAGCAGAGAATGATACGATCGCTTGG
AACAAGTTTTCCTTACCCCACCCCTGGTTATGTCTCGAAAATGTGGGATG
AAAAATTTAGTAAAGGACAAAATGATTATCTCTGTTATGTTGTCTGCACG
ATCCGTGATGCATTTTCCTATATTTTTTTGTCTTTGATCCCACATTTACA
TCTGTCTACCTCCCCCATTTCGTGCTGTCTCTGGAAAGTTCTATTCACCA
ATCCTCATTGCTCTTTTTCTCCTCAGGTCTATTTTCTACGCACACCCGCA
CACCGAGTCAAAACTTAGATGGCTGCTACTGCTGCAGATGGAGAGTGGAT
CGATGTCAGCGGAGATGGAGGATTGCTTAAAAAGGTACGAAAGAGGAGCG
GTTCGTAAGGAGTTCAGGGGGGTATAAATAGGAGGGCAAGATCCTGGCTA
AAATCAGCACGGGAATCTAAGAATTGCCCGTCTTGATGGTGTATGGACTA
AACAGATATTAAAGGAAGGAGAAGGTGAATCACCGCCGGATGGAAACGAG
GTCGTAGCGCACTACACGGGCACTCTGGAAAGCGATGGGACTGAATTCGG
TATGTATGGTCGACGTAGAATCTGCGAAAGATTTTACCGTTGTTTCAATT
CAAAATGAGTGGATTTGCTTTGGTTGAATGGAAACAATGTTTCCTTATTA
ACTTTTCTTGTCTGACGTGCCGCAACCTCTACTCTGTGCCATGTCTAGAT
TCCTCCCGGAAGCGCAATCAGCCGTTCAAGTTCACGATCGGGCTAGGGCA
GGTGATCAAAGGCTGGGACCTCGGTTTTGCGACCATGAAGGTATGCGAAA
AAAAGAGGTTGTGGACGGCCTAGGGATGTAGGATAGGTGCCACAGGTTGA
GGGATGCCTCTGCGCACGGAATTGGTCGTTGCGACGCCCTGGGACAGGCT
GAAGCCCTCCCATCAAGGAAACCTGGTAATCCACTGGCCTCTCCACCTTC
TTTGCCACTCCATTGCCCAGGTCGGGGAACACGCGATCCTGAAGTGTCGA
GAGGACTACGGATATGGGGAGAGCGGCAGCCCGCCCACCATTCCTCCCAA
AGCCACCCTGTGCTTCGACGTGGAGCTCCTCTCTTTCGCGCCCAAAAAGA
AGGAGAAGTGGGAGATGTCGGCAGAAGAGCGGATGGCCGAGGCTTTGAAA
TTGAAAGAGGTGTGCTTTTTCCCTGCAGTCCCTCTCCTTTTTATATTTGA
CCCTTCCTTCCCCCTGTTTACTGGATCTGTCCTACGTCTTTCCCGTCCTT
GTTTCTTCTCTTGGGAGAAGGATACGCATTGACTCTTTCAATTATGTGGT
ATTCAGTCTCACTACCGTCATTTGCCCTTTTAAAGTCCTTCTACTCTCAT
TCATGTCTTCTCTTGCCCTCCCCCTCCTCTTTCCCGCCTCCTCTCCCTCC
CTGTCGCTCCCAGGGTGCCGCCGGTCATTTCAAGGAGCAACGATGGGGCG
ATGCGGCCTCTGAATACATGGACGCGGCTTCTTACGTGGATGGGCTGCAT
GTAGGAGGGAGGGAAGGAGGAGGGAGGGAGGGGGGGCGGGAATGGATGAA
GAAAGGCGGGGAGAGGAATGTAGTGTGAGGGGCGATGGATAGGGTGCTGT
TTGAAATGTAGGGAGACGCGAATGAGAGTTTGGCGTTTTAGTAACCAATT
CCTGATAAGGATGCATACACTTTACTGTTAACTCCATGCTGACGATGACC
CGCCCTTTCCTCCTTCCTGTCTCTGTCCCTCCCTCCCTCCCCTCCCTTTT
CTGCATCTTCCTCCCCTCTTTCGCTCCCCACCCTCGGGTCCTGGACTAGG
AGGATGACCCCACGGTCGGAGAAACGAAGCGGGTGCCTTGGCGGTGAGCA
ACGCCGCATTGGCCTTCTTGAAAGCGCAGGTAATGCGTCCGGACCATCCC
CCGTCGGTCAAAAGGCTGGGGCGGAGGCACTGAATGAGGCTACCCGAGTA
GAAAGGGAGGCATTGGGCAATACAACCGACTCAGCCGTGGACCCCATTGT
GCCTTGGCTTTGTGACTGTCTCCTTATCC back to topCoding sequence (CDS) from alignment at CM002465.1:1005913..1008091- >rna5443 ID=rna5443|Name=rna5443|organism=Nannochloropsis gaditana|type=CDS|length=3030bp|location=Sequence derived from alignment at CM002465.1:1005913..1008091- (Nannochloropsis gaditana)
GGTGCCGCCGGTCATTTCAAGGAGCAACGATGGGGCGATGCGGCCTCTGA
ATACATGGACGCGGCTTCTTACGTGGATGGGCTGCATGTAGGAGGGAGGG
AAGGAGGAGGGAGGGAGGGGGGGCGGGAATGGATGAAGAAAGGCGGGGAG
AGGAATGTAGTGTGAGTCGGGGAACACGCGATCCTGAAGTGTCGAGAGGA
CTACGGATATGGGGAGAGCGGCAGCCCGCCCACCATTCCTCCCAAAGCCA
CCCTGTGCTTCGACGTGGAGCTCCTCTCTTTCGCGCCCAAAAAGAAGGAG
AAGTGGGAGATGTCGGCAGAAGAGCGGATGGCCGAGGCTTTGAAATTGAA
AGAGATTCCTCCCGGAAGCGCAATCAGCCGTTCAAGTTCACGATCGGGCT
AGGGCAGGTGATCAAAGGCTGGGACCTCGGTTTTGCGACCATGAAGATAT
TAAAGGAAGGAGAAGGTGAATCACCGCCGGATGGAAACGAGGTCGTAGCG
CACTACACGGGCACTCTGGAAAGCGATGGGACTGAATTCGATGGCTGCTA
CTGCTGCAGATGGAGAGTGGATCGATGTCAGCGGAGATGGAGGATTGCTT
AAAAAGGGTGCCGCCGGTCATTTCAAGGAGCAACGATGGGGCGATGCGGC
CTCTGAATACATGGACGCGGCTTCTTACGTGGATGGGCTGCATGTAGGAG
GGAGGGAAGGAGGAGGGAGGGAGGGGGGGCGGGAATGGATGAAGAAAGGC
GGGGAGAGGAATGTAGTGTGAGTCGGGGAACACGCGATCCTGAAGTGTCG
AGAGGACTACGGATATGGGGAGAGCGGCAGCCCGCCCACCATTCCTCCCA
AAGCCACCCTGTGCTTCGACGTGGAGCTCCTCTCTTTCGCGCCCAAAAAG
AAGGAGAAGTGGGAGATGTCGGCAGAAGAGCGGATGGCCGAGGCTTTGAA
ATTGAAAGAGATTCCTCCCGGAAGCGCAATCAGCCGTTCAAGTTCACGAT
CGGGCTAGGGCAGGTGATCAAAGGCTGGGACCTCGGTTTTGCGACCATGA
AGATATTAAAGGAAGGAGAAGGTGAATCACCGCCGGATGGAAACGAGGTC
GTAGCGCACTACACGGGCACTCTGGAAAGCGATGGGACTGAATTCGATGG
CTGCTACTGCTGCAGATGGAGAGTGGATCGATGTCAGCGGAGATGGAGGA
TTGCTTAAAAAGGGTGCCGCCGGTCATTTCAAGGAGCAACGATGGGGCGA
TGCGGCCTCTGAATACATGGACGCGGCTTCTTACGTGGATGGGCTGCATG
TAGGAGGGAGGGAAGGAGGAGGGAGGGAGGGGGGGCGGGAATGGATGAAG
AAAGGCGGGGAGAGGAATGTAGTGTGAGTCGGGGAACACGCGATCCTGAA
GTGTCGAGAGGACTACGGATATGGGGAGAGCGGCAGCCCGCCCACCATTC
CTCCCAAAGCCACCCTGTGCTTCGACGTGGAGCTCCTCTCTTTCGCGCCC
AAAAAGAAGGAGAAGTGGGAGATGTCGGCAGAAGAGCGGATGGCCGAGGC
TTTGAAATTGAAAGAGATTCCTCCCGGAAGCGCAATCAGCCGTTCAAGTT
CACGATCGGGCTAGGGCAGGTGATCAAAGGCTGGGACCTCGGTTTTGCGA
CCATGAAGATATTAAAGGAAGGAGAAGGTGAATCACCGCCGGATGGAAAC
GAGGTCGTAGCGCACTACACGGGCACTCTGGAAAGCGATGGGACTGAATT
CGATGGCTGCTACTGCTGCAGATGGAGAGTGGATCGATGTCAGCGGAGAT
GGAGGATTGCTTAAAAAGGGTGCCGCCGGTCATTTCAAGGAGCAACGATG
GGGCGATGCGGCCTCTGAATACATGGACGCGGCTTCTTACGTGGATGGGC
TGCATGTAGGAGGGAGGGAAGGAGGAGGGAGGGAGGGGGGGCGGGAATGG
ATGAAGAAAGGCGGGGAGAGGAATGTAGTGTGAGTCGGGGAACACGCGAT
CCTGAAGTGTCGAGAGGACTACGGATATGGGGAGAGCGGCAGCCCGCCCA
CCATTCCTCCCAAAGCCACCCTGTGCTTCGACGTGGAGCTCCTCTCTTTC
GCGCCCAAAAAGAAGGAGAAGTGGGAGATGTCGGCAGAAGAGCGGATGGC
CGAGGCTTTGAAATTGAAAGAGATTCCTCCCGGAAGCGCAATCAGCCGTT
CAAGTTCACGATCGGGCTAGGGCAGGTGATCAAAGGCTGGGACCTCGGTT
TTGCGACCATGAAGATATTAAAGGAAGGAGAAGGTGAATCACCGCCGGAT
GGAAACGAGGTCGTAGCGCACTACACGGGCACTCTGGAAAGCGATGGGAC
TGAATTCGATGGCTGCTACTGCTGCAGATGGAGAGTGGATCGATGTCAGC
GGAGATGGAGGATTGCTTAAAAAGGGTGCCGCCGGTCATTTCAAGGAGCA
ACGATGGGGCGATGCGGCCTCTGAATACATGGACGCGGCTTCTTACGTGG
ATGGGCTGCATGTAGGAGGGAGGGAAGGAGGAGGGAGGGAGGGGGGGCGG
GAATGGATGAAGAAAGGCGGGGAGAGGAATGTAGTGTGAGTCGGGGAACA
CGCGATCCTGAAGTGTCGAGAGGACTACGGATATGGGGAGAGCGGCAGCC
CGCCCACCATTCCTCCCAAAGCCACCCTGTGCTTCGACGTGGAGCTCCTC
TCTTTCGCGCCCAAAAAGAAGGAGAAGTGGGAGATGTCGGCAGAAGAGCG
GATGGCCGAGGCTTTGAAATTGAAAGAGATTCCTCCCGGAAGCGCAATCA
GCCGTTCAAGTTCACGATCGGGCTAGGGCAGGTGATCAAAGGCTGGGACC
TCGGTTTTGCGACCATGAAGATATTAAAGGAAGGAGAAGGTGAATCACCG
CCGGATGGAAACGAGGTCGTAGCGCACTACACGGGCACTCTGGAAAGCGA
TGGGACTGAATTCGATGGCTGCTACTGCTGCAGATGGAGAGTGGATCGAT
GTCAGCGGAGATGGAGGATTGCTTAAAAAG back to top
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