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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_101074g2.3868.mrna |
| Orig protein id | gnl|cribi|Naga_101074g2.3868 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:1005913..1008103 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5442 ID=rna5442|Name=rna5442|organism=Nannochloropsis gaditana|type=mRNA|length=1761bp
CGGCCCCACGGGGAATGGGAAGACCATCTCCTTTCTCAATACATGCACAC
CCCCTCTCCCTTCCTCGCTCGTGTTCCCCTCCCACACACCCAGATGTGGT
CAGAAGCCGCGCAAGAAGCGGGACTTGCCCTCAAGAAGGAAGCTGAGCAC
GCGAAGGCTCTCTACCGACGAGGCGTGGCTCGCATGAACCTTGGGCTGCT
CGAGGAGGCCAAGGCAGACTTATTGGGGGCGGCGAAGGTCGACCCTCAGA
ACAAGGATATCCGAATGCAGTTGCAAGCCATCAAAGACAAAATGAAGGCC
ATGCTCGCCAAGGAGAAGGCTACCTTTGGAGGTTTCTTGAATAAACTCTC
CATGTACGAGGACAAGGAAGGCGTGGTGGCGCACGAAGGTCCCAACCCCA
AGGTCTTCATGGACGTGACGATCGGCGAGGAAAAGGCCGGGAGAATCTCG
ATGGAACTCTTCGCGGATACGGTCCCGAAAACCGCCGAAAATTTCAGAGC
CTTGTGCACAGGCGAGAAAGGACAGAGCCAGACCACGGGCGCGCTCCTCT
CCTTCAAGGGCTCGGCTTTCCACCGGGTCATCAAGGATTTCATGATCCAG
GGCGGCGATTTCACAGCCGGCGACGGGACAGGAGGAGAGTCCATTTACGG
GCAAAAATTCAAGGACGAAAATTTCAAGCTCAAACATACGGAGCCCGGCC
TCCTTTCTATGGCCAACGCGGGCCCCAATACGAATGGGTCTCAATTTTTT
ATTACTACCAAAGATACACCCCATTTAGACGGTCGCCATGTTGTCTTTGG
AAAGGTGATTGAGGGGATGGAAATCGTCCGCCGCATCGAGGAGCTGCCCA
AAGATGAAAAAGATCGACCGTTGGAACCCGTGGTGATAGAATCGTGCGGA
GAGCTCAACGAGTGAGAGGGAGTCGGGCCGGGCGGCAACTGGTGGTGGAG
AGACTGAGGATACCGAGCAGGCATATTATGAAGGCGAACGATTAGAAGTT
GGAGTGCAATTTCGGGCTGGAGGGAGGGGGTTAGATCAGGGGTGTTCTGG
AAGAAATATTGAGAAGGTTATCGCCTTGTTAGACTTTCGGAAAAGGGAGG
AAGAGAGGAAAAAATGATGGGGAGATAGGAGGAGAAAGAAAAGCGGAGAT
GGAGCCCTGACCAGTAAAGGAGAAAAGAGCAGGAAAGATAACGAATACGT
AGTTGAGATGGTGAAGGCCTCTAGTAACCCGAGCAAAAATAATTTGATAG
AAGGAGAAGGTCTCTAGATTCTCCAAATGCGTACTCAGAACGCACTGAAT
GCAGAACTTGAATTTCCCAATGATATTCTGGATCTCGCGGGAAGATCGAG
CTCAAGCGTGTCTTAGAATCAAATTGCAGCTGGTTATAGTTTCTTTCTCC
GTGTGAGTGTGCGAAGATCGGAAAGAGGCAAGATACCCTGGGGTATCACT
CCTCATCGTCATCTCTGTCTCACAAATGTCTTGCATCTTATACTGTGTAC
AGCTTGATATCTAGTCAGTGCACATCCTTACCTTTCTCGATCCAAAGAGG
AGAGTCGCAATCAGCATTTCCCTTCATATCCAAGCCCGCGATAGTCTGGG
CTACACCGCTGCTTAAGTATCCGAAGCGTTTCCAACGGAGGTCAATGACT
AATTTCGTCTCGGTGAGATGATGTAGGGTCGCTCTTTCTTTCAAAACACT
GCACATGAATAACATAAGAGAACACTTGTGCTTCTTTGTGAATAAGATAA
GAAAACAATTG back to topprotein sequence of rna5442 >rna5442-protein ID=rna5442-protein|Name=rna5442|organism=Nannochloropsis gaditana|type=polypeptide|length=201bp
MAATAADGEWIDVSGDGGLLKKILKEGEGESPPDGNEVVAHYTGTLESDG
TEFDSSRKRNQPFKFTIGLGQVIKGWDLGFATMKVGEHAILKCREDYGYG
ESGSPPTIPPKATLCFDVELLSFAPKKKEKWEMSAEERMAEALKLKEGAA
GHFKEQRWGDAASEYMDAASYVDGLHVGGREGGGREGGREWMKKGGERNV
V back to topmRNA from alignment at CM002465.1:1005913..1008103- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5442 ID=rna5442|Name=rna5442|organism=Nannochloropsis gaditana|type=mRNA|length=2191bp|location=Sequence derived from alignment at CM002465.1:1005913..1008103- (Nannochloropsis gaditana)
ACATGCAGGCGGGAGGACTCCGACCAAGGAATGTGCGTGCGTTTTGGCAG
GGTATTGCCATACTCTGCCCGCTTTCAGGCGGCGTGGTGGGGAGATTCCG
TGCATTGTGTGCTTGGTTTTAGGGAATGAAACCTCAGAGCAGAGAATGAT
ACGATCGCTTGGAACAAGTTTTCCTTACCCCACCCCTGGTTATGTCTCGA
AAATGTGGGATGAAAAATTTAGTAAAGGACAAAATGATTATCTCTGTTAT
GTTGTCTGCACGATCCGTGATGCATTTTCCTATATTTTTTTGTCTTTGAT
CCCACATTTACATCTGTCTACCTCCCCCATTTCGTGCTGTCTCTGGAAAG
TTCTATTCACCAATCCTCATTGCTCTTTTTCTCCTCAGGTCTATTTTCTA
CGCACACCCGCACACCGAGTCAAAACTTAGATGGCTGCTACTGCTGCAGA
TGGAGAGTGGATCGATGTCAGCGGAGATGGAGGATTGCTTAAAAAGGTAC
GAAAGAGGAGCGGTTCGTAAGGAGTTCAGGGGGGTATAAATAGGAGGGCA
AGATCCTGGCTAAAATCAGCACGGGAATCTAAGAATTGCCCGTCTTGATG
GTGTATGGACTAAACAGATATTAAAGGAAGGAGAAGGTGAATCACCGCCG
GATGGAAACGAGGTCGTAGCGCACTACACGGGCACTCTGGAAAGCGATGG
GACTGAATTCGGTATGTATGGTCGACGTAGAATCTGCGAAAGATTTTACC
GTTGTTTCAATTCAAAATGAGTGGATTTGCTTTGGTTGAATGGAAACAAT
GTTTCCTTATTAACTTTTCTTGTCTGACGTGCCGCAACCTCTACTCTGTG
CCATGTCTAGATTCCTCCCGGAAGCGCAATCAGCCGTTCAAGTTCACGAT
CGGGCTAGGGCAGGTGATCAAAGGCTGGGACCTCGGTTTTGCGACCATGA
AGGTATGCGAAAAAAAGAGGTTGTGGACGGCCTAGGGATGTAGGATAGGT
GCCACAGGTTGAGGGATGCCTCTGCGCACGGAATTGGTCGTTGCGACGCC
CTGGGACAGGCTGAAGCCCTCCCATCAAGGAAACCTGGTAATCCACTGGC
CTCTCCACCTTCTTTGCCACTCCATTGCCCAGGTCGGGGAACACGCGATC
CTGAAGTGTCGAGAGGACTACGGATATGGGGAGAGCGGCAGCCCGCCCAC
CATTCCTCCCAAAGCCACCCTGTGCTTCGACGTGGAGCTCCTCTCTTTCG
CGCCCAAAAAGAAGGAGAAGTGGGAGATGTCGGCAGAAGAGCGGATGGCC
GAGGCTTTGAAATTGAAAGAGGTGTGCTTTTTCCCTGCAGTCCCTCTCCT
TTTTATATTTGACCCTTCCTTCCCCCTGTTTACTGGATCTGTCCTACGTC
TTTCCCGTCCTTGTTTCTTCTCTTGGGAGAAGGATACGCATTGACTCTTT
CAATTATGTGGTATTCAGTCTCACTACCGTCATTTGCCCTTTTAAAGTCC
TTCTACTCTCATTCATGTCTTCTCTTGCCCTCCCCCTCCTCTTTCCCGCC
TCCTCTCCCTCCCTGTCGCTCCCAGGGTGCCGCCGGTCATTTCAAGGAGC
AACGATGGGGCGATGCGGCCTCTGAATACATGGACGCGGCTTCTTACGTG
GATGGGCTGCATGTAGGAGGGAGGGAAGGAGGAGGGAGGGAGGGGGGGCG
GGAATGGATGAAGAAAGGCGGGGAGAGGAATGTAGTGTGAGGGGCGATGG
ATAGGGTGCTGTTTGAAATGTAGGGAGACGCGAATGAGAGTTTGGCGTTT
TAGTAACCAATTCCTGATAAGGATGCATACACTTTACTGTTAACTCCATG
CTGACGATGACCCGCCCTTTCCTCCTTCCTGTCTCTGTCCCTCCCTCCCT
CCCCTCCCTTTTCTGCATCTTCCTCCCCTCTTTCGCTCCCCACCCTCGGG
TCCTGGACTAGGAGGATGACCCCACGGTCGGAGAAACGAAGCGGGTGCCT
TGGCGGTGAGCAACGCCGCATTGGCCTTCTTGAAAGCGCAGGTAATGCGT
CCGGACCATCCCCCGTCGGTCAAAAGGCTGGGGCGGAGGCACTGAATGAG
GCTACCCGAGTAGAAAGGGAGGCATTGGGCAATACAACCGACTCAGCCGT
GGACCCCATTGTGCCTTGGCTTTGTGACTGTCTCCTTATCC back to topCoding sequence (CDS) from alignment at CM002465.1:1005913..1008103- >rna5442 ID=rna5442|Name=rna5442|organism=Nannochloropsis gaditana|type=CDS|length=3030bp|location=Sequence derived from alignment at CM002465.1:1005913..1008103- (Nannochloropsis gaditana)
GGTGCCGCCGGTCATTTCAAGGAGCAACGATGGGGCGATGCGGCCTCTGA
ATACATGGACGCGGCTTCTTACGTGGATGGGCTGCATGTAGGAGGGAGGG
AAGGAGGAGGGAGGGAGGGGGGGCGGGAATGGATGAAGAAAGGCGGGGAG
AGGAATGTAGTGTGAGTCGGGGAACACGCGATCCTGAAGTGTCGAGAGGA
CTACGGATATGGGGAGAGCGGCAGCCCGCCCACCATTCCTCCCAAAGCCA
CCCTGTGCTTCGACGTGGAGCTCCTCTCTTTCGCGCCCAAAAAGAAGGAG
AAGTGGGAGATGTCGGCAGAAGAGCGGATGGCCGAGGCTTTGAAATTGAA
AGAGATTCCTCCCGGAAGCGCAATCAGCCGTTCAAGTTCACGATCGGGCT
AGGGCAGGTGATCAAAGGCTGGGACCTCGGTTTTGCGACCATGAAGATAT
TAAAGGAAGGAGAAGGTGAATCACCGCCGGATGGAAACGAGGTCGTAGCG
CACTACACGGGCACTCTGGAAAGCGATGGGACTGAATTCGATGGCTGCTA
CTGCTGCAGATGGAGAGTGGATCGATGTCAGCGGAGATGGAGGATTGCTT
AAAAAGGGTGCCGCCGGTCATTTCAAGGAGCAACGATGGGGCGATGCGGC
CTCTGAATACATGGACGCGGCTTCTTACGTGGATGGGCTGCATGTAGGAG
GGAGGGAAGGAGGAGGGAGGGAGGGGGGGCGGGAATGGATGAAGAAAGGC
GGGGAGAGGAATGTAGTGTGAGTCGGGGAACACGCGATCCTGAAGTGTCG
AGAGGACTACGGATATGGGGAGAGCGGCAGCCCGCCCACCATTCCTCCCA
AAGCCACCCTGTGCTTCGACGTGGAGCTCCTCTCTTTCGCGCCCAAAAAG
AAGGAGAAGTGGGAGATGTCGGCAGAAGAGCGGATGGCCGAGGCTTTGAA
ATTGAAAGAGATTCCTCCCGGAAGCGCAATCAGCCGTTCAAGTTCACGAT
CGGGCTAGGGCAGGTGATCAAAGGCTGGGACCTCGGTTTTGCGACCATGA
AGATATTAAAGGAAGGAGAAGGTGAATCACCGCCGGATGGAAACGAGGTC
GTAGCGCACTACACGGGCACTCTGGAAAGCGATGGGACTGAATTCGATGG
CTGCTACTGCTGCAGATGGAGAGTGGATCGATGTCAGCGGAGATGGAGGA
TTGCTTAAAAAGGGTGCCGCCGGTCATTTCAAGGAGCAACGATGGGGCGA
TGCGGCCTCTGAATACATGGACGCGGCTTCTTACGTGGATGGGCTGCATG
TAGGAGGGAGGGAAGGAGGAGGGAGGGAGGGGGGGCGGGAATGGATGAAG
AAAGGCGGGGAGAGGAATGTAGTGTGAGTCGGGGAACACGCGATCCTGAA
GTGTCGAGAGGACTACGGATATGGGGAGAGCGGCAGCCCGCCCACCATTC
CTCCCAAAGCCACCCTGTGCTTCGACGTGGAGCTCCTCTCTTTCGCGCCC
AAAAAGAAGGAGAAGTGGGAGATGTCGGCAGAAGAGCGGATGGCCGAGGC
TTTGAAATTGAAAGAGATTCCTCCCGGAAGCGCAATCAGCCGTTCAAGTT
CACGATCGGGCTAGGGCAGGTGATCAAAGGCTGGGACCTCGGTTTTGCGA
CCATGAAGATATTAAAGGAAGGAGAAGGTGAATCACCGCCGGATGGAAAC
GAGGTCGTAGCGCACTACACGGGCACTCTGGAAAGCGATGGGACTGAATT
CGATGGCTGCTACTGCTGCAGATGGAGAGTGGATCGATGTCAGCGGAGAT
GGAGGATTGCTTAAAAAGGGTGCCGCCGGTCATTTCAAGGAGCAACGATG
GGGCGATGCGGCCTCTGAATACATGGACGCGGCTTCTTACGTGGATGGGC
TGCATGTAGGAGGGAGGGAAGGAGGAGGGAGGGAGGGGGGGCGGGAATGG
ATGAAGAAAGGCGGGGAGAGGAATGTAGTGTGAGTCGGGGAACACGCGAT
CCTGAAGTGTCGAGAGGACTACGGATATGGGGAGAGCGGCAGCCCGCCCA
CCATTCCTCCCAAAGCCACCCTGTGCTTCGACGTGGAGCTCCTCTCTTTC
GCGCCCAAAAAGAAGGAGAAGTGGGAGATGTCGGCAGAAGAGCGGATGGC
CGAGGCTTTGAAATTGAAAGAGATTCCTCCCGGAAGCGCAATCAGCCGTT
CAAGTTCACGATCGGGCTAGGGCAGGTGATCAAAGGCTGGGACCTCGGTT
TTGCGACCATGAAGATATTAAAGGAAGGAGAAGGTGAATCACCGCCGGAT
GGAAACGAGGTCGTAGCGCACTACACGGGCACTCTGGAAAGCGATGGGAC
TGAATTCGATGGCTGCTACTGCTGCAGATGGAGAGTGGATCGATGTCAGC
GGAGATGGAGGATTGCTTAAAAAGGGTGCCGCCGGTCATTTCAAGGAGCA
ACGATGGGGCGATGCGGCCTCTGAATACATGGACGCGGCTTCTTACGTGG
ATGGGCTGCATGTAGGAGGGAGGGAAGGAGGAGGGAGGGAGGGGGGGCGG
GAATGGATGAAGAAAGGCGGGGAGAGGAATGTAGTGTGAGTCGGGGAACA
CGCGATCCTGAAGTGTCGAGAGGACTACGGATATGGGGAGAGCGGCAGCC
CGCCCACCATTCCTCCCAAAGCCACCCTGTGCTTCGACGTGGAGCTCCTC
TCTTTCGCGCCCAAAAAGAAGGAGAAGTGGGAGATGTCGGCAGAAGAGCG
GATGGCCGAGGCTTTGAAATTGAAAGAGATTCCTCCCGGAAGCGCAATCA
GCCGTTCAAGTTCACGATCGGGCTAGGGCAGGTGATCAAAGGCTGGGACC
TCGGTTTTGCGACCATGAAGATATTAAAGGAAGGAGAAGGTGAATCACCG
CCGGATGGAAACGAGGTCGTAGCGCACTACACGGGCACTCTGGAAAGCGA
TGGGACTGAATTCGATGGCTGCTACTGCTGCAGATGGAGAGTGGATCGAT
GTCAGCGGAGATGGAGGATTGCTTAAAAAG back to top
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