rna5438, rna5438 (mRNA) Nannochloropsis gaditana

Overview
Namerna5438
Unique Namerna5438
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length300
Alignment locationCM002465.1:995766..996201 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102963g1.442.mrna
Orig protein idgnl|cribi|Naga_102963g1.442
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:995766..996201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102963g1gene5258Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5438rna5438-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25248.1cds5425Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5438 ID=rna5438|Name=rna5438|organism=Nannochloropsis gaditana|type=mRNA|length=300bp
ATGGACGCCCTCCTGGAATACCTGCGGAAAGAGTGCAAGCCCCCCGTTCC
TGTGGCTCGTGTAGGAATTGGGCCCATATTTAAAAAGGACGTGACACAGA
CGGGCACGAACATCGAAAAAGGCCTCAAGGAGTTCGCTTGTATTCTGGCT
TTCGATGTTAAGGTGGACGCGGATGCGCGGGCTCACGCTGATGAGGTGAG
GAGGGGAAGCAGGAAGAAAGTTGGAGAGCAAGGGCGGGAGGGAGGACAGG
GAGGAGGGAGGGAGGAAGAAGAAGGGACTGAGAGGAAGACTCACTGCTAA
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protein sequence of rna5438

>rna5438-protein ID=rna5438-protein|Name=rna5438|organism=Nannochloropsis gaditana|type=polypeptide|length=72bp
MLSTTFSQASSLRRSSPCNSSAASGHPSWWRSTSIPNGPFRASLDAQEEN
TRREFQDRTDRIIVQLMEQLSS
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mRNA from alignment at CM002465.1:995766..996201-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5438 ID=rna5438|Name=rna5438|organism=Nannochloropsis gaditana|type=mRNA|length=436bp|location=Sequence derived from alignment at CM002465.1:995766..996201- (Nannochloropsis gaditana)
ATGCTTTCCACGACGTTCTCGCAGGCCTCGAGCCTCAGACGATCGAGTCC
CTGCAACTCCTCCGCCGCAAGCGGACACCCTTCGTGGTGGCGCTCAACAA
GGTCCCTCTTCCCTCCTTCCCTTCCTCCCTCCCTTCCTCCCTCCCACCCT
TCCTTCCTCTTGACACGCCCATCCCTCCCTTTTTTTCCCTCCCTCCCGCC
CGCCCGCAGGTTGACCGTTGCTATGCATGGAAAAGCATCCCCAACGGCCC
CTTTCGCGCCTCTTTGGACGCACAGGAAGAGAACACCCGCCGGGAATTCC
AGGATCGCACCGATCGGATCATTGTCCAGCTTATGGAGCAGGTCTCCCTC
CCTCCCGCCCTCCCTCCCACCCTCCTTCCCGCCCTCCCTCCCGCCTTCCT
TCGCCGTTCTCCCCCTTGGCTTAGCTGTCCTCGTGA
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Coding sequence (CDS) from alignment at CM002465.1:995766..996201-

>rna5438 ID=rna5438|Name=rna5438|organism=Nannochloropsis gaditana|type=CDS|length=657bp|location=Sequence derived from alignment at CM002465.1:995766..996201- (Nannochloropsis gaditana)
CTGTCCTCGTGACATCCCCAACGGCCCCTTTCGCGCCTCTTTGGACGCAC
AGGAAGAGAACACCCGCCGGGAATTCCAGGATCGCACCGATCGGATCATT
GTCCAGCTTATGGAGCAGATGCTTTCCACGACGTTCTCGCAGGCCTCGAG
CCTCAGACGATCGAGTCCCTGCAACTCCTCCGCCGCAAGCGGACACCCTT
CGTGGTGGCGCTCAACAAGCTGTCCTCGTGACATCCCCAACGGCCCCTTT
CGCGCCTCTTTGGACGCACAGGAAGAGAACACCCGCCGGGAATTCCAGGA
TCGCACCGATCGGATCATTGTCCAGCTTATGGAGCAGATGCTTTCCACGA
CGTTCTCGCAGGCCTCGAGCCTCAGACGATCGAGTCCCTGCAACTCCTCC
GCCGCAAGCGGACACCCTTCGTGGTGGCGCTCAACAAGCTGTCCTCGTGA
CATCCCCAACGGCCCCTTTCGCGCCTCTTTGGACGCACAGGAAGAGAACA
CCCGCCGGGAATTCCAGGATCGCACCGATCGGATCATTGTCCAGCTTATG
GAGCAGATGCTTTCCACGACGTTCTCGCAGGCCTCGAGCCTCAGACGATC
GAGTCCCTGCAACTCCTCCGCCGCAAGCGGACACCCTTCGTGGTGGCGCT
CAACAAG
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Synonyms
Publications