rna5436, rna5436 (mRNA) Nannochloropsis gaditana

Overview
Namerna5436
Unique Namerna5436
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length408
Alignment locationCM002465.1:992122..993086 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101208g2.4374.mrna
Orig protein idgnl|cribi|Naga_101208g2.4374
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:992122..993086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101208g2gene5256Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5436rna5436-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25250.1cds5423Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5436 ID=rna5436|Name=rna5436|organism=Nannochloropsis gaditana|type=mRNA|length=408bp
CCCCATCTCTTCTCGTCGTGGGAGGGGCCGTTCTGGTGCATGCGTTCTGG
CAAAGCGACTTGGAGGGTCTGTTGTGGAATTCTTTGCAGAAAGAGAGAGG
GAGGAGGTTCCACGTTTGAATTCGGAAAAAAAGTAGTTGCGGGTGTGGTT
CGAAGGTGTAGGAGGGAGGGTAGGGTTGCCGAGGTAGGAAATGGCGCGAA
AAGGTTGCATTGGATGGAAAAAGGAAGGAGGGGTACAGGGGAGGGCAGCT
CAAAGTCCTCCTTCCGTAGGAGGACAAAAAATTGGGTAGAGAGCCGGAGC
GGTGGCGGAAGGAGGGGGGAAGGGGGCGAGGAACCGCCATGGGGGAGGGA
GGAAAGCCTTGGGAGAGGTCGGAGAGGGCCTGAAGTGAAGCCGGGCACAT
GAGTCAGG
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protein sequence of rna5436

>rna5436-protein ID=rna5436-protein|Name=rna5436|organism=Nannochloropsis gaditana|type=polypeptide|length=147bp
MLEDIAQQLEFTEILLLFLRNQRMPKTFFKSMTNRQSSLESSSLKWDLRA
SMLSRVMREYTAMQEKRRTKDEVMKRLRGKLKKPAHHSPESRMKRCSEKR
EEGVLQARREPSTSEHVAIDPSLSLPFLPPLFPPFLPLSQTHLDFRL
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mRNA from alignment at CM002465.1:992122..993086+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5436 ID=rna5436|Name=rna5436|organism=Nannochloropsis gaditana|type=mRNA|length=965bp|location=Sequence derived from alignment at CM002465.1:992122..993086+ (Nannochloropsis gaditana)
GTGAGCCGGCTTTTTGGACGATAAGGTCCCTTGCAAAATCCCTTTGCGAT
GTGCAATGACCGGATGTCCAGGGATTGACGATAATTGTTTTCAGGAATGA
AGTGGGGCGGTGTTTtcagaaaaaaggaagaaaaccGTGTTGTTTTGGCC
TTGTAGAAAATGAGCTGCGAAAGATAGTCAAATATTGGTCTGTTGCAGAC
TCCTTGAATCTTGAAGTAAGGTGAGTGTCTATACCCGCCGTCCTGATTTG
CGTCATTTCACACGAGGTGTGTCCCACATTCTGATATCAATCGCCGTCCT
GTCAAAATTTTGACCCGGAAGTGTTTGGATCTCTTCAATATTGCGATGCG
AAGATGACATGATGTGAATGTAAAATATGCGAGGCTGTGAAatgagagga
ggaacagcAAGATATACACAAGACTCAGCCAAGCTATTATCatcttttgc
tttctttcctttttagTGTGAAagttctcctcccccaccctctcttgAGT
CCTTGGCTCGATCCCCACCACATGCTGGAAGACATCGCCCAGCAACTCGA
GTTTACCGAGATCCTCCTCCTATTTCTGCGCAATCAAAGAATGCCAAAGA
CCTTTTTCAAATCTATGACCAACCGCCAGTCGTCGTTGGAGAGTTCATCT
TTGAAATGGGACTTGAGGGCATCGATGCTCTCTCGGGTAATGCGGGAGTA
CACTGCCatgcaggaaaaaaggaggacaaaggaCGAGGTCATGAAGAGAT
TGAGAGGTAAACTAAAAAAACCAGCACACCATTCCCCCGAATCGAGGATG
AAGCGATGCtcagagaagagagaggaaggtgtATTACAGGCCAGACGGga
gccctccacctccgaaCATGTCGCCATCGACCCgtcactttccctcccct
ttctccctcccctctttcctcccttccttccactctcTCAAACTCACCTG
GATTTTCGGCTGTAA
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Coding sequence (CDS) from alignment at CM002465.1:992122..993086+

>rna5436 ID=rna5436|Name=rna5436|organism=Nannochloropsis gaditana|type=CDS|length=444bp|location=Sequence derived from alignment at CM002465.1:992122..993086+ (Nannochloropsis gaditana)
ATGCTGGAAGACATCGCCCAGCAACTCGAGTTTACCGAGATCCTCCTCCT
ATTTCTGCGCAATCAAAGAATGCCAAAGACCTTTTTCAAATCTATGACCA
ACCGCCAGTCGTCGTTGGAGAGTTCATCTTTGAAATGGGACTTGAGGGCA
TCGATGCTCTCTCGGGTAATGCGGGAGTACACTGCCatgcaggaaaaaag
gaggacaaaggaCGAGGTCATGAAGAGATTGAGAGGTAAACTAAAAAAAC
CAGCACACCATTCCCCCGAATCGAGGATGAAGCGATGCtcagagaagaga
gaggaaggtgtATTACAGGCCAGACGGgagccctccacctccgaaCATGT
CGCCATCGACCCgtcactttccctcccctttctccctcccctctttcctc
ccttccttccactctcTCAAACTCACCTGGATTTTCGGCTGTAA
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Synonyms
Publications