rna5435, rna5435 (mRNA) Nannochloropsis gaditana

Overview
Namerna5435
Unique Namerna5435
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length524
Alignment locationCM002465.1:987631..988038 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102006g1.1542.mrna
Orig protein idgnl|cribi|Naga_102006g1.1542
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:987631..988038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102006g1gene5255Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25251.1cds5422Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5435rna5435-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5435 ID=rna5435|Name=rna5435|organism=Nannochloropsis gaditana|type=mRNA|length=524bp
TGCATCATCCTCGTTTCGCTGTTCCATCGCAGTGCTGTTCCCTTCCCGTA
ATCCAAAACCCACACCACACCTTCCTCCCTCCCTCCCTCCCTCGCTCCCT
CCCATACTCCCTCCCTCCCTCCCTCAGGACCTGGAAATCGTGGAACGCCC
GGGCGCCGACCCCCTCCAGCTGCGTTGCCCCATCACCCAGTCCACTTACG
TAGAGCCCATGCGAAACGAACCTTGTGGTCACACCTACAGCAAGGCGGGA
ATCATGCAAAGCTTGCGGAAGAAGCACGAGGTCAAGTGCCCCGTACCTGG
ATGCAACAAGGCCGTTCGCGCCGCGTCCTTGGAGCGAGACCGGGAAAAGG
AGGTATTGGTGCTGCGCTTCGAGCGGCAGACGCAAGGTGTATTCATGGCC
TCCCAGAGGGACGCGGGAGCGGAGGAGGTGGAGGAATGAAGGATGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGCCGAAGCATTGTAAATAA
AGAAGCAAGAGATGCAGTCAGACA
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protein sequence of rna5435

>rna5435-protein ID=rna5435-protein|Name=rna5435|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
PHLFSSWEGPFWCMRSGKATWRVCCGILCRKREGGGSTFEFGKKVVAGVV
RRCRREGRVAEVGNGAKRLHWMEKGRRGTGEGSSKSSFRRRTKNWVESRS
GGGRRGEGGEEPPWGREESLGRGRRGPEVKPGT
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mRNA from alignment at CM002465.1:987631..988038-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5435 ID=rna5435|Name=rna5435|organism=Nannochloropsis gaditana|type=mRNA|length=408bp|location=Sequence derived from alignment at CM002465.1:987631..988038- (Nannochloropsis gaditana)
CCCCATCTCTTCTCGTCGTGGGAGGGGCCGTTCTGGTGCATGCGTTCTGG
CAAAGCGACTTGGAGGGTCTGTTGTGGAATTCTTTGCAGAAAGAGAGAGG
GAGGAGGTTCCACGTTTGAATTCGGAAAAAAAGTAGTTGCGGGTGTGGTT
CGAAGGTGTAGGAGGGAGGGTAGGGTTGCCGAGGTAGGAAATGGCGCGAA
AAGGTTGCATTGGATGGAAAAAGGAAGGAGGGGTACAGGGGAGGGCAGCT
CAAAGTCCTCCTTCCGTAGGAGGACAAAAAATTGGGTAGAGAGCCGGAGC
GGTGGCGGAAGGAGGGGGGAAGGGGGCGAGGAACCGCCATGGGGGAGGGA
GGAAAGCCTTGGGAGAGGTCGGAGAGGGCCTGAAGTGAAGCCGGGCACAT
GAGTCAGG
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Coding sequence (CDS) from alignment at CM002465.1:987631..988038-

>rna5435 ID=rna5435|Name=rna5435|organism=Nannochloropsis gaditana|type=CDS|length=402bp|location=Sequence derived from alignment at CM002465.1:987631..988038- (Nannochloropsis gaditana)
CCCCATCTCTTCTCGTCGTGGGAGGGGCCGTTCTGGTGCATGCGTTCTGG
CAAAGCGACTTGGAGGGTCTGTTGTGGAATTCTTTGCAGAAAGAGAGAGG
GAGGAGGTTCCACGTTTGAATTCGGAAAAAAAGTAGTTGCGGGTGTGGTT
CGAAGGTGTAGGAGGGAGGGTAGGGTTGCCGAGGTAGGAAATGGCGCGAA
AAGGTTGCATTGGATGGAAAAAGGAAGGAGGGGTACAGGGGAGGGCAGCT
CAAAGTCCTCCTTCCGTAGGAGGACAAAAAATTGGGTAGAGAGCCGGAGC
GGTGGCGGAAGGAGGGGGGAAGGGGGCGAGGAACCGCCATGGGGGAGGGA
GGAAAGCCTTGGGAGAGGTCGGAGAGGGCCTGAAGTGAAGCCGGGCACAT
GA
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Synonyms
Publications