rna5431, rna5431 (mRNA) Nannochloropsis gaditana

Overview
Namerna5431
Unique Namerna5431
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length330
Alignment locationCM002465.1:981781..982852 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101784g1.9724.mrna
Orig protein idgnl|cribi|Naga_101784g1.9724
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:981781..982852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101784g1gene5251Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25255.1cds5418Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5431rna5431-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5431 ID=rna5431|Name=rna5431|organism=Nannochloropsis gaditana|type=mRNA|length=330bp
ATGAACCCTGTAGAGCATCCTCACGGCGGCGGGAACCACCAGCACATCGG
GCACCCGTCCACCGTCAAACGCGACGCGCCCGCCGGGAAGAAAGTGGGTC
TGGTGGCGGCCCGACGCACTGGGCGTTTGCGGGGCATTAAGAAGAACGCG
GAGAAGGACCAGGATGGGGGCTGGAATGAGAGCGGCCCAGTGGGGATGGA
GAAGAGCACAGCCAAGAGGCGGTCGTGGCTGTCTATGCTTGAACGGAAAG
AAGAAAAAACCACCCGTGGGACGTACTCGTTTTGCTGCGGGGAGGGTGGG
GGGGGTCACCTCGTTGTGTGGAGGGTATAG
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protein sequence of rna5431

>rna5431-protein ID=rna5431-protein|Name=rna5431|organism=Nannochloropsis gaditana|type=polypeptide|length=110bp
PPSLSLSSPSSLPSCRPAFILPFHPSPPPFLVLIFLPSLAYLDHWGVSRS
SSLPPSLPPSLPPFLVTTGRDGGRGGSLRRGRGWDVGLSERPCPPSRPPS
RPFSRLPLFL
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mRNA from alignment at CM002465.1:981781..982852-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5431 ID=rna5431|Name=rna5431|organism=Nannochloropsis gaditana|type=mRNA|length=1072bp|location=Sequence derived from alignment at CM002465.1:981781..982852- (Nannochloropsis gaditana)
CCTCCCTCCCTATCTTTGTCTTCACCCTCTTCCCTCCCTTCCTGCCGTCC
TGCCTTCATCCTTCCTTTCCATCCCTCCCCTCCCCCCTTCCTAGTCCTCA
TTTTTCTCCCCTCCCTTGCGTACCTTGACCATTGGGGTGTCTCACGTTCT
TCCTCCCTCCCTCCCTCCCTTCCTCCTTCCCTCCCTCCCTTCCTCGTTAC
CACAGGACGCGACGGTGGACGAGGAGGAAGTCTACGACGAGGAAGAGGAT
GGGATGTTGGCCTGAGCGAGCGGCCTTGTCCTCCATCCCGACCTCCCTCC
CGACCTTTCTCCCGCCTTCCCCTTTTCTTGTGACAGAGCCATGCCTGCGA
CGATGGCAGGTCTGGCAGCAAGAGGAGGCGGAGGCTTGAGAGGATAATGT
CCTCTCCACGCCGAAGTGCAGTCACCCCACCATATATAACAAGACTGAAA
AAAAAACGTCATAAAATTTGGAGAAGAAAAACACAAAAAAAAAAAGAAGC
GATGCGCCGCCACTGTGCTTTCCTACCGGTCGCGCGCTCCCTCCCTCCCT
CCCTCCCTTTCTCCTTCGTTTGTATCATGCCGTATAGGGCGGGTGCAAGA
AAGGAGGTGGACAGGTAGTGTTACGAGCACGCGCACGACGGGAGCCTCAC
GAGAAAGTTGTACGGGCAAAGCGCAGGAAAAGAAACAAAAATAGGTGACA
AAGATTGAGAGCATGTACGAGAGTGAAATTAGGCAAGGGAGGGTACGGGC
GAGACCCCCCTTTGTCTCCTGCATATGCGGTGTTAGCTTGGCTAGGACAT
AAGGAAGCACTGAACAGTAAATTCACACACACAAGGCTCACCATCGATTA
AAGGGCGCGTGGTAGGAGTGGGAGACGGTAAAGCGAGGAAAAGCAACCCG
GATGTACGCGTGAGTGACAGGAAGGAGGGCGCCAGCCGAGCCGGCATACC
ATCAAAGAACGACTGAGTATAGGTGTACGTGCAGCAAGCAAAGTCGAACC
CCTGAATTAAAAACTCAAAAAACCAAAAAACCAAAAAACCAAAACACATA
AAAACAAGCATCGCCATCACCC
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Coding sequence (CDS) from alignment at CM002465.1:981781..982852-

>rna5431 ID=rna5431|Name=rna5431|organism=Nannochloropsis gaditana|type=CDS|length=333bp|location=Sequence derived from alignment at CM002465.1:981781..982852- (Nannochloropsis gaditana)
CCTCCCTCCCTATCTTTGTCTTCACCCTCTTCCCTCCCTTCCTGCCGTCC
TGCCTTCATCCTTCCTTTCCATCCCTCCCCTCCCCCCTTCCTAGTCCTCA
TTTTTCTCCCCTCCCTTGCGTACCTTGACCATTGGGGTGTCTCACGTTCT
TCCTCCCTCCCTCCCTCCCTTCCTCCTTCCCTCCCTCCCTTCCTCGTTAC
CACAGGACGCGACGGTGGACGAGGAGGAAGTCTACGACGAGGAAGAGGAT
GGGATGTTGGCCTGAGCGAGCGGCCTTGTCCTCCATCCCGACCTCCCTCC
CGACCTTTCTCCCGCCTTCCCCTTTTCTTGTGA
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Synonyms
Publications