rna5427, rna5427 (mRNA) Nannochloropsis gaditana

Overview
Namerna5427
Unique Namerna5427
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length527
Alignment locationCM002465.1:978099..979141 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101853g1.2218.mrna
Orig protein idgnl|cribi|Naga_101853g1.2218
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:978099..979141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101853g1gene5247Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5427rna5427-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25259.1cds5414Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5427 ID=rna5427|Name=rna5427|organism=Nannochloropsis gaditana|type=mRNA|length=527bp
TTGGTACAGGCATTGGGGAGTTCGTCCGACTGGACTTGCCACGCTTCCCA
TGGACCTTGCTCCCTTCTCCCAGCATACATTCGACGCACGGGCATGGGTG
GAGAGCATTTTGACACCCGAAAAACGCGACGGGGAGACGCTTGATGCCTA
TGTGTCCGCCGTGTCCATGCAGTTGCAGCTCCTCGCCCAAGAATTGAACG
GGGAGCTCGAACGGGGCATGATGGAGCTGACAGGATCGCTCCCCCGGGCC
ATGACCGAGCTCTGTCTTTTGGAAACGTCGGGGAGGTCGTTGGAGCAGGA
GCTTGGCCACGTGCTCGCTCAGGCAGTCAAGGCGCAGGACAGAGGGGAGG
CGGGGGGGAGGAGGGGCGGAGGACGAAGACCCCGTGCAGATCTTGGCGCA
GTTACACAAGGTGAAGCTCAACATGTCTCAATGCCGGGACACGCTCATGG
AGGCGGTGCATTGGCAACGCGCCGTCCGAGAGGTCACGGAGCGCTTCGCC
GAGGGCGCCTTGGGGCAGGTGAGGGGA
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protein sequence of rna5427

>rna5427-protein ID=rna5427-protein|Name=rna5427|organism=Nannochloropsis gaditana|type=polypeptide|length=210bp
MATHPPALSGHVQAGNAGGVSCLENDEAPEYPPPPPYYRMFAPRGRLDMD
GGGEEEGEEEEEEGAAAKDEEAGDGVVGKEENFPLPPPAIPLRGKPVTVF
GFPVAYLDEERYDPIVSPEARLYSCREVTVYDEEEGEEGGREGGREGGRA
VIVEMDYKAELQKITENARGENFEYFGGIADRRQGEVRLVSSREGVMRRE
GNELREPRCG
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mRNA from alignment at CM002465.1:978099..979141-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5427 ID=rna5427|Name=rna5427|organism=Nannochloropsis gaditana|type=mRNA|length=1043bp|location=Sequence derived from alignment at CM002465.1:978099..979141- (Nannochloropsis gaditana)
CTAGGCAGGCACGTAAACTAAAGCATGGCCACGCACCCTCCCGCATTGAG
TGGTCATGTTCAAGCAGGGAATGCCGGTGGAGTATCGTGCTTAGAAAACG
ACGAGGCTCCTGAATACCCGCCTCCACCACCTTACTATCGCATGTTTGCC
CCGCGAGGACGACTCGACATGGACGGCGGGGGGGAGGAGGAGGGAGAGGA
GGAGGAGGAGGAAGGAGCGGCAGCCAAGGACGAAGAAGCAGGCGACGGGG
TCGTCGGAAAGGAGGAAAATTTCCCTCTTCCTCCACCTGCCATCCCCTTG
CGGGGAAAGCCCGTGACTGTATTTGGGTTCCCGGTAGCCTATCTCGACGA
GGTGAGCAACGTCGTGAGGAGGAAGGAGGGGCAGCGGGAGAGTGCTGTGG
AAAAAAAAGGCGGCCCTACGGGCATGAGACGGTCTGGGCAGGTGGAGGAG
GGAGAGGATGGGGCAGAGGGCGAGGACGGGGAGGAGGAAGGGGCCCTTAA
AAATGGAAAATGGATGGCAGGAGAGGGACAAGGAGGATTAGCGAGGAAGG
GGGAAGGAAAGGCAGCCTTCCCGGCGGGGCAGATCCCTTCTAAAGCTTGG
ATCATTTGGTCATCGGCAGGGTGCGTAAGGCGTTCACCTGACTTCCCACC
TTCCTTCCCTCCCTCCCTCCCGCCCTCCCGCCCTCCTTCCCTCCCTCCCT
CCCGTCCTCCTTCCCTCCCTCCATCCCGCCTTGTTAGGAACGCTACGACC
CCATCGTGTCGCCAGAGGCCCGTCTTTACTCTTGTCGGGAAGTCACGGTG
TACGACGAGGAGGAGGGGGAGGAGGGAGGGAGGGAGGGAGGGAGAGAGGG
AGGGAGGGCGGTGATTGTTGAGATGGATTACAAGGCGGAGCTGCAAAAAA
TTACGGAAAATGCTCGAGGAGAAAATTTTGAATATTTTGGAGGGATTGCA
GACAGGAGGCAGGGAGAAGTACGACTGGTGAGTAGTAGGGAGGGTGTGAT
GAGGAGGGAAGGAAACGAACTCCGTGAACCGAGGTGTGGATGA
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Coding sequence (CDS) from alignment at CM002465.1:978099..979141-

>rna5427 ID=rna5427|Name=rna5427|organism=Nannochloropsis gaditana|type=CDS|length=1266bp|location=Sequence derived from alignment at CM002465.1:978099..979141- (Nannochloropsis gaditana)
GAACGCTACGACCCCATCGTGTCGCCAGAGGCCCGTCTTTACTCTTGTCG
GGAAGTCACGGTGTACGACGAGGAGGAGGGGGAGGAGGGAGGGAGGGAGG
GAGGGAGAGAGGGAGGGAGGGCGGTGATTGTTGAGATGGATTACAAGGCG
GAGCTGCAAAAAATTACGGAAAATGCTCGAGGAGAAAATTTTGAATATTT
TGGAGGGATTGCAGACAGGAGGCAGGGAGAAGTACGACTGGTGAGTAGTA
GGGAGGGTGTGATGAGGAGGGAAGGAAACGAACTCCGTGAACCGAGGTGT
GGATGAATGGCCACGCACCCTCCCGCATTGAGTGGTCATGTTCAAGCAGG
GAATGCCGGTGGAGTATCGTGCTTAGAAAACGACGAGGCTCCTGAATACC
CGCCTCCACCACCTTACTATCGCATGTTTGCCCCGCGAGGACGACTCGAC
ATGGACGGCGGGGGGGAGGAGGAGGGAGAGGAGGAGGAGGAGGAAGGAGC
GGCAGCCAAGGACGAAGAAGCAGGCGACGGGGTCGTCGGAAAGGAGGAAA
ATTTCCCTCTTCCTCCACCTGCCATCCCCTTGCGGGGAAAGCCCGTGACT
GTATTTGGGTTCCCGGTAGCCTATCTCGACGAGGAACGCTACGACCCCAT
CGTGTCGCCAGAGGCCCGTCTTTACTCTTGTCGGGAAGTCACGGTGTACG
ACGAGGAGGAGGGGGAGGAGGGAGGGAGGGAGGGAGGGAGAGAGGGAGGG
AGGGCGGTGATTGTTGAGATGGATTACAAGGCGGAGCTGCAAAAAATTAC
GGAAAATGCTCGAGGAGAAAATTTTGAATATTTTGGAGGGATTGCAGACA
GGAGGCAGGGAGAAGTACGACTGGTGAGTAGTAGGGAGGGTGTGATGAGG
AGGGAAGGAAACGAACTCCGTGAACCGAGGTGTGGATGAATGGCCACGCA
CCCTCCCGCATTGAGTGGTCATGTTCAAGCAGGGAATGCCGGTGGAGTAT
CGTGCTTAGAAAACGACGAGGCTCCTGAATACCCGCCTCCACCACCTTAC
TATCGCATGTTTGCCCCGCGAGGACGACTCGACATGGACGGCGGGGGGGA
GGAGGAGGGAGAGGAGGAGGAGGAGGAAGGAGCGGCAGCCAAGGACGAAG
AAGCAGGCGACGGGGTCGTCGGAAAGGAGGAAAATTTCCCTCTTCCTCCA
CCTGCCATCCCCTTGCGGGGAAAGCCCGTGACTGTATTTGGGTTCCCGGT
AGCCTATCTCGACGAG
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Synonyms
Publications