rna5424, rna5424 (mRNA) Nannochloropsis gaditana

Overview
Namerna5424
Unique Namerna5424
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length425
Alignment locationCM002465.1:969460..970147 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101244g1.1101.mrna
Orig protein idgnl|cribi|Naga_101244g1.1101
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:969460..970147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101244g1gene5244Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5424rna5424-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25262.1cds5411Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5424 ID=rna5424|Name=rna5424|organism=Nannochloropsis gaditana|type=mRNA|length=425bp
ATGTAGGCGTGCACCGGGTGGAAAAGGAAGGAAGCTGGAACGGAAGCGCT
GATAAATTGGACACGATACCATCACATGCGCCAGAGCAGACACACAGCAG
CCGCCTCGAGTCGTATCACCCGTTTACTGCCCGTCGCGACCATTTCACGC
TCCAAGCAACCCAGACGGGTGTCACTTGTCCTCCTTGTCGTGCACTGCTA
TTTTTACAGCCTTGTAAGCTGTGTCAGCGAGGCTTTTGTTTTCCCTGCTA
CGGGCGCACGTGGCTCCTGTAGAACTCCCGGCCAAATTACTCGCTGCCCT
CCTCCCCATCTCGGGAAGACGATGGAGCGCTTGACCTCAGGGAAGCACCG
GGGAACCGCCGGCCCGTATCGAAGCCCCCTCCGGTTCAAAAAGAAGGATT
CCGACCACGACAGGTGGGGGAGGGA
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protein sequence of rna5424

>rna5424-protein ID=rna5424-protein|Name=rna5424|organism=Nannochloropsis gaditana|type=polypeptide|length=187bp
MTGVVTVTSSAQQPDIAAASASDEANGATMGEDTEDIEQELFGLPAGTDL
TSTEVEASPAMAEAAFQSPNPLLEVLVRLIAAGEGTEEIKARLKEVEDRL
GREEGGDLSPLPGSVMHAATLIAEGEYVRVLTETQVGRTFFATAATAAVG
RKNQDVDSLEESVHQALNLALTRIIQGPPYPDLPKPA
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mRNA from alignment at CM002465.1:969460..970147-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5424 ID=rna5424|Name=rna5424|organism=Nannochloropsis gaditana|type=mRNA|length=688bp|location=Sequence derived from alignment at CM002465.1:969460..970147- (Nannochloropsis gaditana)
ATGACGGGCGTGGTCACTGTCACGTCCTCCGCGCAACAGCCGGACATTGC
CGCAGCCAGTGCAAGCGATGAGGCCAATGGGGCCACCATGGGTGAGGATA
CTGAGGACATAGAACAAGAGCTCTTCGGCCTTCCGGCTGGGACGGATCTC
ACCTCGACTGAGGTCGAGGCATCGCCTGCGATGGCAGAAGCAGCATTTCA
GTCCCCCAATCCCCTGTTGGAAGTACTGGTAAGGCTGATTGCGGCAGGAG
AGGGCACAGAGGAAATCAAGGCGCGTCTGAAGGAGGTAGAGGACAGGTTG
GGGCGTGAGGAGGGCGGAGATCTCTCTCCCTTACCGGGCTCTGTGATGCA
TGCTGCCACTTTGATAGCCGAGGGCGAGTACGTACGGGTATTGACAGAGA
CGCAGGTCGGACGCACCTTTTTCGCCACGGCAGCGACCGCCGCAGTTGGT
AGGAAGAATCAGGACGTGGATTCGTTGGAGGAGAGCGTGCATCAGGCCCT
CAACCTGGCGCTTACGGTGCTTGGCACGGAAGACAGCGGAGACGCATTTT
GCCCGGAGGATGGTAGCGGGAGCGGCACCTCGGAACGGGCCTTCGAATGC
CTGTGCCTGGGCATTGCCCTCTTGAACCTTTACCTGCAAGCGAATTATTC
AGGGCCCTCCATACCCGGATCTACCCAAGCCTGCCTGA
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Coding sequence (CDS) from alignment at CM002465.1:969460..970147-

>rna5424 ID=rna5424|Name=rna5424|organism=Nannochloropsis gaditana|type=CDS|length=1128bp|location=Sequence derived from alignment at CM002465.1:969460..970147- (Nannochloropsis gaditana)
CGAATTATTCAGGGCCCTCCATACCCGGATCTACCCAAGCCTGCCTGAAT
GACGGGCGTGGTCACTGTCACGTCCTCCGCGCAACAGCCGGACATTGCCG
CAGCCAGTGCAAGCGATGAGGCCAATGGGGCCACCATGGGTGAGGATACT
GAGGACATAGAACAAGAGCTCTTCGGCCTTCCGGCTGGGACGGATCTCAC
CTCGACTGAGGTCGAGGCATCGCCTGCGATGGCAGAAGCAGCATTTCAGT
CCCCCAATCCCCTGTTGGAAGTACTGGTAAGGCTGATTGCGGCAGGAGAG
GGCACAGAGGAAATCAAGGCGCGTCTGAAGGAGGTAGAGGACAGGTTGGG
GCGTGAGGAGGGCGGAGATCTCTCTCCCTTACCGGGCTCTGTGATGCATG
CTGCCACTTTGATAGCCGAGGGCGAGTACGTACGGGTATTGACAGAGACG
CAGGTCGGACGCACCTTTTTCGCCACGGCAGCGACCGCCGCAGTTGGTAG
GAAGAATCAGGACGTGGATTCGTTGGAGGAGAGCGTGCATCAGGCCCTCA
ACCTGGCGCTTACGCGAATTATTCAGGGCCCTCCATACCCGGATCTACCC
AAGCCTGCCTGAATGACGGGCGTGGTCACTGTCACGTCCTCCGCGCAACA
GCCGGACATTGCCGCAGCCAGTGCAAGCGATGAGGCCAATGGGGCCACCA
TGGGTGAGGATACTGAGGACATAGAACAAGAGCTCTTCGGCCTTCCGGCT
GGGACGGATCTCACCTCGACTGAGGTCGAGGCATCGCCTGCGATGGCAGA
AGCAGCATTTCAGTCCCCCAATCCCCTGTTGGAAGTACTGGTAAGGCTGA
TTGCGGCAGGAGAGGGCACAGAGGAAATCAAGGCGCGTCTGAAGGAGGTA
GAGGACAGGTTGGGGCGTGAGGAGGGCGGAGATCTCTCTCCCTTACCGGG
CTCTGTGATGCATGCTGCCACTTTGATAGCCGAGGGCGAGTACGTACGGG
TATTGACAGAGACGCAGGTCGGACGCACCTTTTTCGCCACGGCAGCGACC
GCCGCAGTTGGTAGGAAGAATCAGGACGTGGATTCGTTGGAGGAGAGCGT
GCATCAGGCCCTCAACCTGGCGCTTACG
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Synonyms
Publications