rna5420, rna5420 (mRNA) Nannochloropsis gaditana

Overview
Namerna5420
Unique Namerna5420
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1007
Alignment locationCM002465.1:958249..959485 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100901g2.4491.mrna
Orig protein idgnl|cribi|Naga_100901g2.4491
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:958249..959485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100901g2gene5240Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5420rna5420-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25265.1cds5407Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5420 ID=rna5420|Name=rna5420|organism=Nannochloropsis gaditana|type=mRNA|length=1007bp
ATGAGGAGGGAAGGAGGGGAGGAGGAAGGTCCGAGGGAAAGGAGGGGGGA
GGGGGGTCATCGGAGGAAGGAAACGGAGGGAGGGAGGGAAGGAGAAGGTG
GAGATGCCACGGGGGTAGAAGGGCTCGCGGCAGTGACGGGTCTTCCCGGG
TGGGTGTTGGAGAGGGTGGGAAGGAGGAGGGGGGAGGGGGAGGGCAGCAA
CGGCGGGGGAGGAGGAGGACGAGGGAGGGGAAGAGGAGGTAGTTTCCCCT
GGCAGGAGCCTGGGTCGGGGAAAGCATGGCCGCCGTTAGCCTCTACGACA
GAGTCCGGTGATGGATGTGGAAGGAGGGAGGAGGAGGTTCGGGTGCCGAA
ACTGCTTGGAGACGCGGACTGGGGCAGGTGGCGGTGTGAGGTGGTGCTGG
GGGAAGTGAAGAGCGAGAATGACCGATTGGACCCTCGACAGGAAGCCTGG
TTGCACATTTTAACGGCCGCGGGGGTGGTAGCTAAGGTGATGAAGGTGAG
GACGCCGGGGAAGAGGAAGGGGGGAAGGGCGGGAAGGAGGGCGGGGGGAC
AGGACGGAGGCGACGAATTTAGTGGGGAGGATTGATTGTTAAGGTGAGAA
AGGAGGGAAGGAGACAGGAAGAGGAGGAAAGGGGGGGAAGGAGGACTGAG
GGGAGGGAGGGGCGCCAAAGTTAAGGTTCGGGGCGACGACACCGGCCTCA
GGGGATTGTGAGTGTATTAGACGAGCGATGAAAAAGGAAGGTTCAGGGGT
ATCGTGGAAGGGAGGCCTCTATCTTGTAATAAATCGGTGAAAGAAAAGCT
ACGAGTGGTCACACCAACCGTGTGCATCTCTGTGGGGGTCAGGATGACAG
GATGAGGGAATAGGCGCCAGGTAAGGAGAACAGAGACGGACACGACGGTC
CAGTGCAAGACTCAGAGGCCCATCGTCTCCCTCTTAGGCGCCTTGTGGCC
ATCCTTTCCAACACCCCCGCCCTCCAATTCCATCATACCATCAATTCCAT
CACCACC
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protein sequence of rna5420

>rna5420-protein ID=rna5420-protein|Name=rna5420|organism=Nannochloropsis gaditana|type=polypeptide|length=233bp
MNSMARLVRGKEKMRGHCGVSSCLLLVLFLSLVDAATAFVTPFSLRFLDR
LPSTTSRENSRGSSGVSLYAARKKKNSGSAGEGFGQNVQKKKEAAPAPVP
EGSGGKEEERRGVTREELATPAAAGEFKAKMDEVGKSLQALADQVNAREG
EGENPYDPAFVAEQKRLRAEIDFERPYARVRPRNWDYITGLPVPKIVQIE
DMIPIPAPSLRDEFRERRPNDPAYMAQRIKVRR
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mRNA from alignment at CM002465.1:958249..959485-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5420 ID=rna5420|Name=rna5420|organism=Nannochloropsis gaditana|type=mRNA|length=1237bp|location=Sequence derived from alignment at CM002465.1:958249..959485- (Nannochloropsis gaditana)
GGAGGTCGCGAGGTGAAATCAGGTTAACCACTATGCCTTCACTTACAAAG
AAAATGTCTAACATGAACACATGAACAGCATGGCTAGGTTGGTTCGAGGG
AAAGAAAAGATGCGGGGACACTGCGGCGTGTCTTCCTGCCTCCTTTTGGT
TTTATTTCTCTCCCTTGTGGACGCCGCCACGGCCTTCGTGACCCCCTTCA
GCCTGCGCTTCCTTGACCGCCTACCCTCAACGACCTCTCGAGAGAACAGC
AGAGGCAGCAGTGGGGTATCACTTTACGCAGCCCGTAAGAAGAAGAATTC
GGGCAGCGCTGGTGAAGGATTTGGACAGAATGTGCAGAAGAAAAAAGAAG
CAGCACCCGCCCCTGTGCCAGAGGGAAGTGGGGGGAAGGAAGAAGAAAGA
AGAGGAGTGACACGAGAAGAATTGGCCACGCCGGCCGCAGCCGGGGAGTT
CAAGGCTAAGATGGATGAAGTAGGCAAGAGCCTTCAGGCGCTGGCCGACC
AAGTGAACGCACGAGAGGGGGAAGGGGAGGTAAGAATTGCCTGGCTGATG
GCAGGAGGAGCCGTGAAGTGCGCAAGAGTCAAAGCTTGAAACCCTGGGTG
GCGTGATCCATTGAACTGGCACAATGGTCGTTAGTAAGCGCAATAGCACC
TAGTCTGGTGTGGTTCACTCTGTCTCCCTCCTTCCTTGTCTCTGTCTCTA
CCGTCCTCCTCAGAACCCCTACGACCCTGCCTTTGTGGCGGAACAAAAAC
GTTTGCGTGCTGAGATAGACTTCGAGCGCCCGTACGCCCGGGTTCGCCCT
AGAAACTGGGATTACATAACCGGATTGCCCGTGCCCAAAATTGTCCAGAT
CGAGGACGTGAGTGGGAAACGGAAGGGAGGGAGGGACGGAGGGCGGGGGG
GAGGAGAGGCTTCGAATCCGAGATCAAGAAAGCAATATTCTTCCCTCCCC
TCCCTTCTCCATCCCTCCCGCCCTCCGTTCCTCCCGTCATTTAGTCATAC
CCTCGGTCTAGACAAATGAAGGATCTGAAGAATGATCTGAACACGATCGA
TCTGAGCAGATGTTCCCTCCACTCCCTACCTTCTTCCCCCCCTCCCTCCC
TCCCTTTTTTTCTTTCTTTTCCCTTTCCCCCCGCTTAGATGATTCCCATT
CCTGCCCCCAGTCTCCGGGACGAATTTCGCGAACGTCGCCCGAACGACCC
CGCCTACATGGCGCAACGCATTAAGGTCAGGAGATAG
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Coding sequence (CDS) from alignment at CM002465.1:958249..959485-

>rna5420 ID=rna5420|Name=rna5420|organism=Nannochloropsis gaditana|type=CDS|length=2106bp|location=Sequence derived from alignment at CM002465.1:958249..959485- (Nannochloropsis gaditana)
ATGATTCCCATTCCTGCCCCCAGTCTCCGGGACGAATTTCGCGAACGTCG
CCCGAACGACCCCGCCTACATGGCGCAACGCATTAAGGTCAGGAGATAGA
ACCCCTACGACCCTGCCTTTGTGGCGGAACAAAAACGTTTGCGTGCTGAG
ATAGACTTCGAGCGCCCGTACGCCCGGGTTCGCCCTAGAAACTGGGATTA
CATAACCGGATTGCCCGTGCCCAAAATTGTCCAGATCGAGGACATGAACA
GCATGGCTAGGTTGGTTCGAGGGAAAGAAAAGATGCGGGGACACTGCGGC
GTGTCTTCCTGCCTCCTTTTGGTTTTATTTCTCTCCCTTGTGGACGCCGC
CACGGCCTTCGTGACCCCCTTCAGCCTGCGCTTCCTTGACCGCCTACCCT
CAACGACCTCTCGAGAGAACAGCAGAGGCAGCAGTGGGGTATCACTTTAC
GCAGCCCGTAAGAAGAAGAATTCGGGCAGCGCTGGTGAAGGATTTGGACA
GAATGTGCAGAAGAAAAAAGAAGCAGCACCCGCCCCTGTGCCAGAGGGAA
GTGGGGGGAAGGAAGAAGAAAGAAGAGGAGTGACACGAGAAGAATTGGCC
ACGCCGGCCGCAGCCGGGGAGTTCAAGGCTAAGATGGATGAAGTAGGCAA
GAGCCTTCAGGCGCTGGCCGACCAAGTGAACGCACGAGAGGGGGAAGGGG
AGATGATTCCCATTCCTGCCCCCAGTCTCCGGGACGAATTTCGCGAACGT
CGCCCGAACGACCCCGCCTACATGGCGCAACGCATTAAGGTCAGGAGATA
GAACCCCTACGACCCTGCCTTTGTGGCGGAACAAAAACGTTTGCGTGCTG
AGATAGACTTCGAGCGCCCGTACGCCCGGGTTCGCCCTAGAAACTGGGAT
TACATAACCGGATTGCCCGTGCCCAAAATTGTCCAGATCGAGGACATGAA
CAGCATGGCTAGGTTGGTTCGAGGGAAAGAAAAGATGCGGGGACACTGCG
GCGTGTCTTCCTGCCTCCTTTTGGTTTTATTTCTCTCCCTTGTGGACGCC
GCCACGGCCTTCGTGACCCCCTTCAGCCTGCGCTTCCTTGACCGCCTACC
CTCAACGACCTCTCGAGAGAACAGCAGAGGCAGCAGTGGGGTATCACTTT
ACGCAGCCCGTAAGAAGAAGAATTCGGGCAGCGCTGGTGAAGGATTTGGA
CAGAATGTGCAGAAGAAAAAAGAAGCAGCACCCGCCCCTGTGCCAGAGGG
AAGTGGGGGGAAGGAAGAAGAAAGAAGAGGAGTGACACGAGAAGAATTGG
CCACGCCGGCCGCAGCCGGGGAGTTCAAGGCTAAGATGGATGAAGTAGGC
AAGAGCCTTCAGGCGCTGGCCGACCAAGTGAACGCACGAGAGGGGGAAGG
GGAGATGATTCCCATTCCTGCCCCCAGTCTCCGGGACGAATTTCGCGAAC
GTCGCCCGAACGACCCCGCCTACATGGCGCAACGCATTAAGGTCAGGAGA
TAGAACCCCTACGACCCTGCCTTTGTGGCGGAACAAAAACGTTTGCGTGC
TGAGATAGACTTCGAGCGCCCGTACGCCCGGGTTCGCCCTAGAAACTGGG
ATTACATAACCGGATTGCCCGTGCCCAAAATTGTCCAGATCGAGGACATG
AACAGCATGGCTAGGTTGGTTCGAGGGAAAGAAAAGATGCGGGGACACTG
CGGCGTGTCTTCCTGCCTCCTTTTGGTTTTATTTCTCTCCCTTGTGGACG
CCGCCACGGCCTTCGTGACCCCCTTCAGCCTGCGCTTCCTTGACCGCCTA
CCCTCAACGACCTCTCGAGAGAACAGCAGAGGCAGCAGTGGGGTATCACT
TTACGCAGCCCGTAAGAAGAAGAATTCGGGCAGCGCTGGTGAAGGATTTG
GACAGAATGTGCAGAAGAAAAAAGAAGCAGCACCCGCCCCTGTGCCAGAG
GGAAGTGGGGGGAAGGAAGAAGAAAGAAGAGGAGTGACACGAGAAGAATT
GGCCACGCCGGCCGCAGCCGGGGAGTTCAAGGCTAAGATGGATGAAGTAG
GCAAGAGCCTTCAGGCGCTGGCCGACCAAGTGAACGCACGAGAGGGGGAA
GGGGAG
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Synonyms
Publications