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Properties
| Property Name | Value |
|---|
| Product | 5-formyltetrahydrofolate cyclo-ligase |
| Orig transcript id | gnl|cribi|Naga_100473g5.7771.mrna |
| Orig protein id | gnl|cribi|Naga_100473g5.7771 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:949522..952559 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5417 ID=rna5417|Name=rna5417|organism=Nannochloropsis gaditana|type=mRNA|length=1311bp
ATGTACATAAAAGACAGTACAGCCTATTTTAAGAATGATCATACTTTCGA
AACATCGAAAACAGAGGAAAGACATCAAAAACAGATGGAAAGGCGTGACA
TAGATCCCAACAAGCTTGCTGTTCCAGAGGGTAATCCCGTGGGAGAGAGA
AACGACGAAGGCGGTGCAAATCGCCTTGAACGTTTAAATGAATACGTGCA
GGAAGGGAATTACTACCAGGCAAGGCAAGAATACATTGCTGTTTTGGAAC
ACAAAAATCATGGCGCACATCTTAAGACTCCTACATCGCTAGGCAGGCCG
TCAACCTGTTCTCGCCAAACCGGTGGAAGCTTTCCTGCCCCCACCCGTGA
ACCGTCAGGTAATATCCACGATGAATATCATCACAACACGGCCGAAACCG
TTCAAAACCGACAGAAAGTGCCACGGGGTAAGGATCAAGAGCCAAGTGTC
TCGCCCCGGCGTCGATGTCCCTGTCCTGAAAAAAAAGTTTAACGTGCAAG
GAAGTAATCTGCCCTCCACTCCGTAAAAATAGCGAACGGTGTCGCCTGAT
GGACGGGGGGGGGTCTCTTGCTTAACAAACACCAAAACACGCGCAATCGT
ACCATTCCTTTAGCGTAAAGCTCTTTGCATGTATAATGCCCTCATTGTAA
GACTGAATGGGAGAAAACGCTTATCAGAGGTATCGAAGTACTTGTCCAAG
CATCCCGGGACCCACCCAGCTCGACTTGAATTTCAATAAAGCGAGAAAAA
ACACACACTTGACATTTACGTGGTAATGTCTGTACGAGTATAGTCTTCAT
CGTTTCCTCTCATTTGGAGATGGCCTTTCGCGGATAGTTTTGATCGAAGA
TAGACTGGATAGATCGACAGGGGCGGGAGACTTGTGTTGTCATTTATCGC
AAGGACACAACTGCTTGCAATTCCCTACTTTCCAGTTGCAATTTGATAAT
ATTTAAGATTCGTCCATGTAGTGGGCGGCCAAATGTTGTTAAGTCCAAAG
AATACCACGACAATGTGTTTGTCGATGCTGGGGGGCCAGCAAATGGATGA
CACTGGGCCGTGTGAGTTAAGGAGGTTCGATGTAGTGTGGTGCGGCGGAG
TTGGGAGATAAGATTGAGAATTGTGTCAAATTTGTGCCGAATGCAAGTAC
TTGAAAGCAAGATACGAGACTCATCAAAGTAATGCGTCACACACGTCCAA
CGTGGAGCGGATCGATAACTGTTCAGCTAGAAATGCATGTATACACCAGC
CTGACAATCGAATAAAATTGAAGAATGTCCATTACCTGCGACGCGTTCCA
CGGCCCTGCTC back to topprotein sequence of rna5417 >rna5417-protein ID=rna5417-protein|Name=rna5417|organism=Nannochloropsis gaditana|type=polypeptide|length=323bp
MLRAWGALASIFNPARQYLGLPLTFIATDTFVSLAATRKAFITLQDIQVW
ESLVPPRERPSGSTCFSRFPRPPSTHLRSFMTSANPPNAGASLSEKKKNL
RKSITARLRALDDSYVAAEASRLFPRLLALEDYKDSTCVSLYLSMPAKEV
PTFPDLLKTVMTDGKRAEGTARDVYVPKVTGPAPGDMVMLPLSSPKDVSS
FPVSKWGIPEPPLPPSFSPSLPPLDLVLVPGVAFDNKCNRLGHGKGYYDS
FLSRLFASHAAAGRARPMTIGLALEEQMVASVPVDTFDLPLDAVVTPDKV
YFRKDRERKGEEEEGGVGARRGR back to topmRNA from alignment at CM002465.1:949522..952559- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5417 ID=rna5417|Name=rna5417|organism=Nannochloropsis gaditana|type=mRNA|length=3038bp|location=Sequence derived from alignment at CM002465.1:949522..952559- (Nannochloropsis gaditana)
GGCGGTGTCGATAGGCAGCTACGACAATGTTCCCCATTCGAAAGCGTGTC
ATCCCACAGTACACCTTCTGTGGCTACTGGGGAACGAGATTATATATCGC
GCGTGCCCAGACTGTCATCCTATGGTACTTGGATGCCATATTTTTGAGGC
TGCTATTCTTCTAAGCGCAGGGTGGGAGGGAGAAGGAGAGAGGAGGTTGA
CTCGTGTCAGCTCGAGTCACAGCATTCCACGCTGAGCAAGCGGGAACTAT
CTTGAAGTCAAGACTTTTCATCACACAAACACGTCCACTTCAGGAGGCTG
GGTGCGGCATCGACCGGCTTCATAAGGCTTGCCATCGCATGCTCAGAGCG
TGGGGTGCCCTGGCGTCGATCTTCAACCCCGCAAGGCAGTATCTCGGCCT
TCCACTCACATTCATTGCTACCGACACCTTTGTCTCCCTTGCTGCAACGA
GAAAAGCATTCATAACCCTCCAAGACATTCAAGTCTGGGAGTCCTTGGTC
CCTCCGCGCGAGCGGCCGTCGGGCTCAACTTGTTTCTCACGTTTCCCCCG
CCCTCCCTCTACCCATTTGCGGTCCTTTATGACATCCGCAAATCCTCCGA
ATGCGGGAGCTTCCCTCTCCGAGAAGAAAAAGAACCTTCGAAAGAGCATC
ACCGCCCGCTTGCGTGCTTTGGACGATTCGTACGTGGCCGCGGAAGCCAG
CCGCCTTTTCCCCCGCTTGCTTGCGTTGGAGGACTACAAGGATAGCACCT
GTGTCAGTCTTTACCTCTCCATGCCAGCCAAAGAGGTACCCACATTCCCC
GACTTGCTCAAGACAGTAATGACAGACGGGAAAAGGGCGGAAGGGACAGC
GAGGGATGTCTACGTGCCTAAGGTAGGTAAAACGTCGAGCCTGAAAAGTT
TTCCCGACCTGCCATGTCTACGGATAAATGCCTTCCTTCCTCCCTACTTC
CCTCTCTCCTTCCCTCCCTTCCTCCTCCCAGGTCACAGGCCCTGCTCCTG
GCGATATGGTCATGCTTCCTCTTTCTTCTCCGAAAGACGTGAGCTCCTTC
CCAGTCTCCAAATGGGGCATCCCTGAGCCCCCCCTCCCTCCCTCCTTCTC
TCCCTCCCTTCCTCCCCTCGACCTCGTCCTCGTACCCGGCGTGGCCTTCG
ATAATAAGTGCAATCGTTTGGGTCATGGCAAAGGCGAGTACCGGGCACGA
ATCTTGTCAGTTCCGAACCCTTCTCATGGAAACTCTCCATGACTCTTTGC
GTTATAAAGAGTCCTGCGTTTTCCGTTTACTAAGAAGGCTATAGCGGTAC
TTGATAGGAAGCACAAAGACCGTTTCTGAGAGAGCCCTACCACCCATCAC
AACACGACATTCGCGGCAAAGTTACATCGATATCCCTGCATCCATACTCG
CCAACCGTTCCGATACGGGTCTAACCCGCCCCCTCCTTCGGCTCCCTCCC
TCCCTCCCTCCCGCCCTCCCCTCCACCCTCCCTCCCACCCACATTCCCAT
CCTGCCAGGCTACTACGATTCTTTCCTCTCTCGCCTCTTTGCCAGCCACG
CGGCGGCAGGTCGGGCGCGGCCCATGACCATCGGTTTGGCGCTGGAGGAG
CAAATGGTGGCGTCGGTGCCAGTGGATACCTTCGACCTCCCGTTGGATGC
AGTTGTGACACCAGACAAGGTGTATTTTCGAAAAGACCGGGAAAGGAAAG
GGGAGGAGGAAGAAGGGGGAGTCGGTGCGAGGAGAGGAAGGTAATTTGGG
GCCTGTATGCGGCTTATAATGGGAGACAAACTTGCGCAGGCAAGGTGCAT
AACGGATGGCAAAAAGATCTCGGGAGCGCTGAGGATGGAAACGGTCGCAC
GACAATTGAATAGGAGGCAAAAGAAGGTGAGAGAAGGAAGCACTCCATTC
CTTCCAGCGAAGTCGTGCCATGGAGTGCGTAGCAAGGAGCGTCCGGGTAT
CCGGCTGGGACAGTCTCTGTCTCATGCGTCAGCGAACGCCCAGTAACCTG
ATAATTAATAATCGTACGCGTAGCTATGACGGATTTGTCCGCGTCAGTAT
GAGCGGGTTTGCCCCCCAAGTGCGAAAGACACCCTTCGAGCAGGGCCGTG
GAACGCGTCGCAGGTAATGGACATTCTTCAATTTTATTCGATTGTCAGGC
TGGTGTATACATGCATTTCTAGCTGAACAGTTATCGATCCGCTCCACGTT
GGACGTGTGTGACGCATTACTTTGATGAGTCTCGTATCTTGCTTTCAAGT
ACTTGCATTCGGCACAAATTTGACACAATTCTCAATCTTATCTCCCAACT
CCGCCGCACCACACTACATCGAACCTCCTTAACTCACACGGCCCAGTGTC
ATCCATTTGCTGGCCCCCCAGCATCGACAAACACATTGTCGTGGTATTCT
TTGGACTTAACAACATTTGGCCGCCCACTACATGGACGAATCTTAAATAT
TATCAAATTGCAACTGGAAAGTAGGGAATTGCAAGCAGTTGTGTCCTTGC
GATAAATGACAACACAAGTCTCCCGCCCCTGTCGATCTATCCAGTCTATC
TTCGATCAAAACTATCCGCGAAAGGCCATCTCCAAATGAGAGGAAACGAT
GAAGACTATACTCGTACAGACATTACCACGTAAATGTCAAGTGTGTGTTT
TTTCTCGCTTTATTGAAATTCAAGTCGAGCTGGGTGGGTCCCGGGATGCT
TGGACAAGTACTTCGATACCTCTGATAAGCGTTTTCTCCCATTCAGTCTT
ACAATGAGGGCATTATACATGCAAAGAGCTTTACGCTAAAGGAATGGTAC
GATTGCGCGTGTTTTGGTGTTTGTTAAGCAAGAGACCCCCCCCCGTCCAT
CAGGCGACACCGTTCGCTATTTTTACGGAGTGGAGGGCAGATTACTTCCT
TGCACGTTAAACTTTTTTTTCAGGACAGGGACATCGACGCCGGGGCGAGA
CACTTGGCTCTTGATCCTTACCCTGTGGCTTGATAATATTCGGCATGAGT
TAATTTCATGCTACTAAATTTTACCCTCAGACAAAATC back to topCoding sequence (CDS) from alignment at CM002465.1:949522..952559- >rna5417 ID=rna5417|Name=rna5417|organism=Nannochloropsis gaditana|type=CDS|length=2916bp|location=Sequence derived from alignment at CM002465.1:949522..952559- (Nannochloropsis gaditana)
GCTACTACGATTCTTTCCTCTCTCGCCTCTTTGCCAGCCACGCGGCGGCA
GGTCGGGCGCGGCCCATGACCATCGGTTTGGCGCTGGAGGAGCAAATGGT
GGCGTCGGTGCCAGTGGATACCTTCGACCTCCCGTTGGATGCAGTTGTGA
CACCAGACAAGGTGTATTTTCGAAAAGACCGGGAAAGGAAAGGGGAGGAG
GAAGAAGGGGGAGTCGGTGCGAGGAGAGGAAGGTAAGTCACAGGCCCTGC
TCCTGGCGATATGGTCATGCTTCCTCTTTCTTCTCCGAAAGACGTGAGCT
CCTTCCCAGTCTCCAAATGGGGCATCCCTGAGCCCCCCCTCCCTCCCTCC
TTCTCTCCCTCCCTTCCTCCCCTCGACCTCGTCCTCGTACCCGGCGTGGC
CTTCGATAATAAGTGCAATCGTTTGGGTCATGGCAAAGATGCTCAGAGCG
TGGGGTGCCCTGGCGTCGATCTTCAACCCCGCAAGGCAGTATCTCGGCCT
TCCACTCACATTCATTGCTACCGACACCTTTGTCTCCCTTGCTGCAACGA
GAAAAGCATTCATAACCCTCCAAGACATTCAAGTCTGGGAGTCCTTGGTC
CCTCCGCGCGAGCGGCCGTCGGGCTCAACTTGTTTCTCACGTTTCCCCCG
CCCTCCCTCTACCCATTTGCGGTCCTTTATGACATCCGCAAATCCTCCGA
ATGCGGGAGCTTCCCTCTCCGAGAAGAAAAAGAACCTTCGAAAGAGCATC
ACCGCCCGCTTGCGTGCTTTGGACGATTCGTACGTGGCCGCGGAAGCCAG
CCGCCTTTTCCCCCGCTTGCTTGCGTTGGAGGACTACAAGGATAGCACCT
GTGTCAGTCTTTACCTCTCCATGCCAGCCAAAGAGGTACCCACATTCCCC
GACTTGCTCAAGACAGTAATGACAGACGGGAAAAGGGCGGAAGGGACAGC
GAGGGATGTCTACGTGCCTAAGGCTACTACGATTCTTTCCTCTCTCGCCT
CTTTGCCAGCCACGCGGCGGCAGGTCGGGCGCGGCCCATGACCATCGGTT
TGGCGCTGGAGGAGCAAATGGTGGCGTCGGTGCCAGTGGATACCTTCGAC
CTCCCGTTGGATGCAGTTGTGACACCAGACAAGGTGTATTTTCGAAAAGA
CCGGGAAAGGAAAGGGGAGGAGGAAGAAGGGGGAGTCGGTGCGAGGAGAG
GAAGGTAAGTCACAGGCCCTGCTCCTGGCGATATGGTCATGCTTCCTCTT
TCTTCTCCGAAAGACGTGAGCTCCTTCCCAGTCTCCAAATGGGGCATCCC
TGAGCCCCCCCTCCCTCCCTCCTTCTCTCCCTCCCTTCCTCCCCTCGACC
TCGTCCTCGTACCCGGCGTGGCCTTCGATAATAAGTGCAATCGTTTGGGT
CATGGCAAAGATGCTCAGAGCGTGGGGTGCCCTGGCGTCGATCTTCAACC
CCGCAAGGCAGTATCTCGGCCTTCCACTCACATTCATTGCTACCGACACC
TTTGTCTCCCTTGCTGCAACGAGAAAAGCATTCATAACCCTCCAAGACAT
TCAAGTCTGGGAGTCCTTGGTCCCTCCGCGCGAGCGGCCGTCGGGCTCAA
CTTGTTTCTCACGTTTCCCCCGCCCTCCCTCTACCCATTTGCGGTCCTTT
ATGACATCCGCAAATCCTCCGAATGCGGGAGCTTCCCTCTCCGAGAAGAA
AAAGAACCTTCGAAAGAGCATCACCGCCCGCTTGCGTGCTTTGGACGATT
CGTACGTGGCCGCGGAAGCCAGCCGCCTTTTCCCCCGCTTGCTTGCGTTG
GAGGACTACAAGGATAGCACCTGTGTCAGTCTTTACCTCTCCATGCCAGC
CAAAGAGGTACCCACATTCCCCGACTTGCTCAAGACAGTAATGACAGACG
GGAAAAGGGCGGAAGGGACAGCGAGGGATGTCTACGTGCCTAAGGCTACT
ACGATTCTTTCCTCTCTCGCCTCTTTGCCAGCCACGCGGCGGCAGGTCGG
GCGCGGCCCATGACCATCGGTTTGGCGCTGGAGGAGCAAATGGTGGCGTC
GGTGCCAGTGGATACCTTCGACCTCCCGTTGGATGCAGTTGTGACACCAG
ACAAGGTGTATTTTCGAAAAGACCGGGAAAGGAAAGGGGAGGAGGAAGAA
GGGGGAGTCGGTGCGAGGAGAGGAAGGTAAGTCACAGGCCCTGCTCCTGG
CGATATGGTCATGCTTCCTCTTTCTTCTCCGAAAGACGTGAGCTCCTTCC
CAGTCTCCAAATGGGGCATCCCTGAGCCCCCCCTCCCTCCCTCCTTCTCT
CCCTCCCTTCCTCCCCTCGACCTCGTCCTCGTACCCGGCGTGGCCTTCGA
TAATAAGTGCAATCGTTTGGGTCATGGCAAAGATGCTCAGAGCGTGGGGT
GCCCTGGCGTCGATCTTCAACCCCGCAAGGCAGTATCTCGGCCTTCCACT
CACATTCATTGCTACCGACACCTTTGTCTCCCTTGCTGCAACGAGAAAAG
CATTCATAACCCTCCAAGACATTCAAGTCTGGGAGTCCTTGGTCCCTCCG
CGCGAGCGGCCGTCGGGCTCAACTTGTTTCTCACGTTTCCCCCGCCCTCC
CTCTACCCATTTGCGGTCCTTTATGACATCCGCAAATCCTCCGAATGCGG
GAGCTTCCCTCTCCGAGAAGAAAAAGAACCTTCGAAAGAGCATCACCGCC
CGCTTGCGTGCTTTGGACGATTCGTACGTGGCCGCGGAAGCCAGCCGCCT
TTTCCCCCGCTTGCTTGCGTTGGAGGACTACAAGGATAGCACCTGTGTCA
GTCTTTACCTCTCCATGCCAGCCAAAGAGGTACCCACATTCCCCGACTTG
CTCAAGACAGTAATGACAGACGGGAAAAGGGCGGAAGGGACAGCGAGGGA
TGTCTACGTGCCTAAG back to top
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