rna5410, rna5410 (mRNA) Nannochloropsis gaditana

Overview
Namerna5410
Unique Namerna5410
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length545
Alignment locationCM002465.1:937314..938536 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101763g1.179.mrna
Orig protein idgnl|cribi|Naga_101763g1.179
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:937314..938536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101763g1gene5232Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5410rna5410-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25276.1cds5397Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5410 ID=rna5410|Name=rna5410|organism=Nannochloropsis gaditana|type=mRNA|length=545bp
CAACCGTTACAACCCTGATGCGACGTGCACAACAACAGCAGCCATACCGC
CTCGGAGAAATCAGAGGACGGAGGCAGCGGCCATGGCTGGCGCGCACATT
TGGAGTTCAGAATGGGCCTACCTGCCAGAATGAAGAACATATCGGATTTC
GTGCCTCCCCCCCCCGAGACCCAGAAAGCTCCGCTCACCCGTACGCTTCT
GGTCGTTGGCCTTTCCCCGGCTTCTTTCAAGGATGAAGTCCTCAAGCATT
TGTGGCCGAAGAAGTACCAGCCAAAGTTGCGCCTCGTCTGGTTGAACCGT
GATGATCCTCCTCCCTCCCTTCCTCCACCGTGGGGATGGCACGAGACCCA
TCGAAAACCCGTCGAATCCTTGCTCGCACCCGAAAACGTGTCGGAGGCGG
GAAGAGAGGAAGATATCGCCCAAGCCTGGGGAGACTCGATATTCGTGGTG
ATGGGTGCCGGCTGCTCCGTTCAAGATTTTCGACATTTGAAAGTGGCATG
GGCCAATGCCTACCCCTTCGACAAGGAGCTTCTCCAGGTGAGGGA
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protein sequence of rna5410

>rna5410-protein ID=rna5410-protein|Name=rna5410|organism=Nannochloropsis gaditana|type=polypeptide|length=229bp
MPSSLTVDDGPCPQARRRASTSKAITFHAHHPTSPKHVVLSTRPVQRECL
ILTMIKSNKESNGQGLLPSPLLLRPLALIRLPFPSLPFLPSSRHSPQAMS
SSNSSSLSSSSSTTTTLRRRLLPSPSSFLLFFPLLLTEDRTHQMPFTCSA
FASSSSSSSSSPPPPPPSPPLPPPPPPPPPPLPPPPPSSPPSLAYTPLLL
SSPASNLPPPFPSPPDKCQRSGPSRPRDL
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mRNA from alignment at CM002465.1:937314..938536+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5410 ID=rna5410|Name=rna5410|organism=Nannochloropsis gaditana|type=mRNA|length=1223bp|location=Sequence derived from alignment at CM002465.1:937314..938536+ (Nannochloropsis gaditana)
cggagaagctGGGAAGGCGAATGGGCTCGgtcgtgagggaggagggtcat
CCTCAAGGTTAAAATGGCGTCATCCGGAATGGAATTGCGTCGTGGAAACg
ccacgggggagaagggggtggaaaaggagggagggcgagggggaggggga
gtgagggagaTGGTGTGATGCTGTTCGGGACTGTCGTTTATAGGCGTAAG
AAAGCATTAAATTTAAATAggtaggggcggaggaggcgggagaggaactg
gaggggggaggagagaggagaaggagactaGCGCCCTCTCAGGACGGATA
AAATGGGGGAAGATATCGGAGTTGAAGAAACCTTAACATACCCCTTTGGG
TGCAAGGAGGGACATGGCGGTAAAGGGAAGAAACCTCGGGCGAGCGACcc
gtgggaaggaaggcagggatggGTCCTTGAAGAGACCTTAACTTCCGATG
CCATCGAGTTTGACGGTTGATGATGGGCCTTGCCCGCAGGCCCGGCGTAG
AGCATCCACCTCCAAAGCCATCACCTTCCATGCCCATCACCCTACCTCCC
CGAAGCACGTCGTTTTGTCGACGCGCCCCGTGCAACGTGAATGTTTGATC
CTGACGATGATAAAGTCTAACAAAGAAAGTAACGGCCAgggccttctccc
ttctcccctcctcctgaggCCGCTCGCGCTCATTCGTCttccgtttcctt
ccctccctttccttccttcttcccgtcaTTCCCCCCAggccatgtcttcc
tccaactcctcctccttatcctcctcctcctccaccaccaccaccttacg
tcgtcgccttcttccctccccatcctccttcctcctctttttccccctcc
tcctcaccgaGGACAGGACTCACCAAATGCCATTCACTTGCTCcgctttc
gcctcctcctcctcctcctcctcctcctcccctcctcctcctcctccttc
tcctcctctccctcctcctcctccacctcctcctccccccctccctcctc
ctcctccttcttctcctccctctctcgcctatacgcccctcctcctctct
tcgccgGCGTCgaaccttcctcccccattcccttctcctcccgacAAATG
TCAGCGGTCCGGGCCCTCGAGGCCGAGAGACCTTTGAAAGACCGACTTTT
TACCGATTTTTTATCGGGTCATTTCGCCGGTCCAGAAGCCATGGAGCAGG
CGCgtgccaggagggagggaggg
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Coding sequence (CDS) from alignment at CM002465.1:937314..938536+

>rna5410 ID=rna5410|Name=rna5410|organism=Nannochloropsis gaditana|type=CDS|length=690bp|location=Sequence derived from alignment at CM002465.1:937314..938536+ (Nannochloropsis gaditana)
ATGCCATCGAGTTTGACGGTTGATGATGGGCCTTGCCCGCAGGCCCGGCG
TAGAGCATCCACCTCCAAAGCCATCACCTTCCATGCCCATCACCCTACCT
CCCCGAAGCACGTCGTTTTGTCGACGCGCCCCGTGCAACGTGAATGTTTG
ATCCTGACGATGATAAAGTCTAACAAAGAAAGTAACGGCCAgggccttct
cccttctcccctcctcctgaggCCGCTCGCGCTCATTCGTCttccgtttc
cttccctccctttccttccttcttcccgtcaTTCCCCCCAggccatgtct
tcctccaactcctcctccttatcctcctcctcctccaccaccaccacctt
acgtcgtcgccttcttccctccccatcctccttcctcctctttttccccc
tcctcctcaccgaGGACAGGACTCACCAAATGCCATTCACTTGCTCcgct
ttcgcctcctcctcctcctcctcctcctcctcccctcctcctcctcctcc
ttctcctcctctccctcctcctcctccacctcctcctccccccctccctc
ctcctcctccttcttctcctccctctctcgcctatacgcccctcctcctc
tcttcgccgGCGTCgaaccttcctcccccattcccttctcctcccgacAA
ATGTCAGCGGTCCGGGCCCTCGAGGCCGAGAGACCTTTGA
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Synonyms
Publications