rna541, rna541 (mRNA) Nannochloropsis gaditana

Overview
Namerna541
Unique Namerna541
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2904
Alignment locationCM002455.1:1350753..1351910 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100332g3.10247.mrna
Orig protein idgnl|cribi|Naga_100332g3.10247
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1350753..1351910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100332g3gene522Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30132.1cds541Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna541rna541-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna541 ID=rna541|Name=rna541|organism=Nannochloropsis gaditana|type=mRNA|length=2904bp
TTTTGGTGGGATGGGATTTCCATAGCCTCCCCTGGAACGCCAAGATCGAC
GGTGCTGCTATCTTTCTTAAATACGCACACGCACGTCACTGTTATCCACG
CCCTATCATGGTTTAAATCCATACATTCTTGCAGAAGCAGGTGTAGGTGA
CAGACACATCATACTTATGGCGCTGGATCTTTTTCGTCGGAGATAACACC
ATGCAACTGGCATGTCGAGATTTTCGTCGGGGAGTGGGTGTGATACTCCC
TTCTTCAGCCCACCCGCAACCCCCATGCTCCTCCACGAAACCATGCGCCT
TGCCCGCTTTGCGGAGGGCACCAGTGGCCAGAATCTACGGTCCTGAACTC
CTGCTCCTTGTATGCATCCTCCTCTTCGCTCCCCATCCCTCCGTTGCGAC
CTTTTTTGGCGGGACCAGTGCGTGTCGAAGCCCATCATCCCACTCGTCTA
TATGGCCCCTATGTTTTGGGGCCCCTTCCTCCTCATCGGGCTCAGGGAGC
GGGCCAGCAAGCGTGCGTAGCAACTCGGCAAGCGCTCGGAGATCCCCCTC
CTTGTGCTCTTCGGCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCAGCGA
GCTCCATCCCGCCGAAATCCAGGACCGCGAAGCCAACCTTCCTTTCATCC
TCCTCCTCCACCTCCTCTCACCCACCTTCGTCTGCCCCACCTTCCCCCCC
CATCCCCTCGCGGCCCCGCGTGCACATAACACGGGACGATATCCTCCCTC
CCAGCGCGGGTACGGCCGCCGAAGGGGCACTATCAGGGCAAGTGGAGGAG
GAGAACAAGGAGGACGACGAGGCAGCGCCCAAACCCATCACTTGCATGTC
CTACGACGTGGAGGGTGTGGCCGCGCTTGCCTCTTTCGTGCCAGCTTCCT
CTCCCTCGACCTCTTCCCCTCCTCGACCTGCCGCCGCCCCCCCCACGTCC
CGCTTCCATTATTTGGGCGGCAACGCTGGGCAATTCCTCAAATACTTGCA
GCAGGAGCTAGGGCAGGCGAAGGCGGAGGCAAGTCAGATTTCGCGGCGGG
CGGTGATGGATTTGGAGGCGGAGAAGGAAGGTTTGGCCGCCTTGTGGCGC
GAAGGGCGGCTCTTGGTGGAGGACCCGCACACCTTGGACCGGATCAACAA
CAAAACGTCCTTTGGGGAGCTGCTGATGACGTACACGCACCGGATGCAAC
GCGCGGACGAGGATCCGCTTACGTCTCAGGACCTGCGCGCTTTCCTCCGT
GCTGAGTACGGGGAGGTGCCCACGGAGGAAGCGACCTATGCCCCCGACCG
AAGGCCCGCAGAGGCCATGGCGGCGCTCAAGCGGCTTCTCGAATGGTTCA
AAGAGGGGTTCCCATACTATAAATCGACGTGCCTTCACTGCGGACACGTC
GGACCTTCCCATTCCCCCCACCCACCCCCGGCACCTTCCTCGCCCACGGC
GGCCGAGGCCCCCCCCATCTCCCCATCCCAGCCCAACCACATGATCGGCG
TCGTCGCCCCCTCCCCTCCCGAGCGGGCGCTGAATGCCACCCTCACGGAG
ATCTACGTCTGCGGGGCGTGCGGGAAAATCTACCGTTTCCCCCGCTCCGT
CTCCCTCCGGCACGTCCTCCAGACCCGGCGGGGCCGGTGCGGCGAATATT
CCCGACTCTTTTTCAAAACCACCGAGGCACTCGGCTACGTCTCCCGCTGG
GTGGTGGACTGGGAGGATCATGTGTGGGTGGAAGTGCGGCTGCCCGGCAA
AGGGTGGGTGCATTTGGACCCGTGCGAGGCGGCGGTGAACGAACCTTTGC
TGTACCAAGGGTGGGGCAAAAAACAAACCTATATCCTGGCCTTTTCCAGG
GAGGAGGTGGAGGATGTGACGCGGGAGTACACCACGGACTGGGCTGGCGC
GTTGGGGCGGCGTCGGGTGAGCGAGGAGGAGATGAGCGACCTCTTGGCGT
GTGCAAATGGGGTGCTGCAGGGAGGGGGGGAGAGAGGGGAGGGAGGGAAG
GAGGGAGAGGGGAGGGGAGGGGATGAAAAGCGGAATGCAGGGAAGAACGC
TGGTCAGACGGAAAAACGGAGGAGAAGCAGTGGCACCAGCCCCAGTGCCG
GCACCGATACGGGGGGGAAGGGCAAGGGAGGCCTGGGGTCGGGCGGTGGG
AGGGAGGGAGGGAGGGACGGAAAGGATCCTGCGGCAGTCACGGCCCCCGT
TGCGTCGAAGGCTTCGAGCACGAGCTCCCCCAAGCCAACCGCGGGCGCGG
GCGCGAAAGGAACGGGCGCATCGAAGCCAATGCGGCCGCCATCCACCGCC
TCTTCGGCGAGTCCGACGGAGGGAGGATGAGGGAATAGGCCCCAGGCGGA
GAGTGGAGGGAGGAAGGGGTGTATAGAGGGGACCTGTGGACATGACGGCA
AATAAGGCAGTGTCAGAGACATGCAGGGGGCAACGAGGTGGCAGACGGAG
GTTGCCCGCGAGCACGGGAGAAGAGAGACATAAGACCACGCATCGGGGAA
GACGTGCTTCCCACCCCGTTCCTGCGACTCGAAAGAAAGGAGGGATGGTC
GGCAAATCTGGTGATTTCACTTCGGACCTAACTGTGTGTTTCGTAGGAGC
GCTTCGACAGTCACTCGCATTTGGGGGAGTGACGCGCCGACTCTAGACAC
AAGGGCGGTTTTAAAAATACAGGGGACAAAGAAATTTCACATGCAAATAA
AAAGGGGCCGTACGTTGAAGAGGTACGTAGGGAAGGACTTCAACATGTTT
TCAGGGTCATGTATAGACATTCCTATTTCCGCTCGAGATTATTCGCACAA
TACTCACTATTGCGTTTCGTGGACGGGCTCAGACCACCATGTGAATTAAT
TCTTTGTTTTAAACTCCTTGAGCTCCTTGATAAAGCCATTCATTTGGTTG
CATA
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protein sequence of rna541

>rna541-protein ID=rna541-protein|Name=rna541|organism=Nannochloropsis gaditana|type=polypeptide|length=113bp
MHSSSLSHLAPQASLRQDGRRARVGPPCGWYRPRQVLRDQMEDSPGPGRR
ERHPAAPHCERGGLDGGRGRKCQVDANGRMLAHGWYGRVRSLAFASSQCA
RAGKLLVDAQSIC
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mRNA from alignment at CM002455.1:1350753..1351910-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna541 ID=rna541|Name=rna541|organism=Nannochloropsis gaditana|type=mRNA|length=1158bp|location=Sequence derived from alignment at CM002455.1:1350753..1351910- (Nannochloropsis gaditana)
CATCCATGGACGCCAATTAATGCGACGTTCTCTCCCGAACCACCGGCCGA
TCCCCCCCCCGCCCCCACCCATCGGCTTTCAACCCCCCCCCGCCGTACAT
GCTTTCCCGCTCCAAACTCAAGCCCAACCCGTTGTCCTCCACCTCCACCA
ACGTGCCCGTCTGCTTCTGGAAAGCCAGGGGCACCACGCCCAGGTCCCCG
TCGTACCGATTCTTCCGCACGTCTAGGTAATGACGGCCCTGGTGGCGTTG
GAGGATGACGACGTTGTCCGCGTCCTGCGTCGCTTTGGATCTACCGGCCG
CAACGAATCGCCCATAGTCATGAGAATTGAGTATCCCAATCCGGCACGTG
TACGACATGCCTCTTTACAGCTATGAAGGCATTCGACAGGCCCTTTTGCC
ACACACCGTCGCTTGATTTCGCGTTATAACTGACGTTTCGTCTTCTGTTA
CGCCCTATTCTGTCAAGCCGATTCTCAGTCTCCATCGTCAACGTCCCCTC
TTCCCGTGCCTTCTCCGGCTCCCTTGTGTCATTTCTGTTTCTCATGCATT
CTTCTTCCCTCTCTCACCTTGCGCCACAGGCTTCGCTACGTCAAGACGGA
CGACGAGCTCGCGTGGGCCCTCCCTGCGGATGGTATCGTCCTCGGCAAGT
CCTACGAGATCAAATGGAGGATTCGCCTGGGCCGGGGCGTCGCGAGCGGC
ACCCAGCTGCCCCTCACTGTGAGCGTGGCGGATTGGATGGAGGACGAGGT
CGTAAGTGCCAAGTAGACGCAAATGGGAGGATGTTGGCCCATGGCTGGTA
CGGGAGGGTACGCTCTTTGGCTTTTGCTTCTTCGCAATGTGCGCGGGCAG
GAAAATTGTTGGTGGATGCTCAGAGTATTTGTTAATGCAAAACACTTGAC
GGAGGGTGCGACCTAATAGTTTGGTTGAAATGATTGGAATATTCGGAAAA
CGTTGTGAATTTGTTTAATAATGGAATGAATGTGAGACTAGATGGAAGTG
TCATCATGGAGCTCGAACCAAAGAGCTACTGATACTGATGAGGGACTATA
CAGAGGGGTGTGACCTGAATGAAAGCTTTGAAACGACTATGCAACCAAAT
GAATGGCTTTATCAAGGAGCTCAAGGAGTTTAAAACAAAGAATTAATTCA
CATGGTGG
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Coding sequence (CDS) from alignment at CM002455.1:1350753..1351910-

>rna541 ID=rna541|Name=rna541|organism=Nannochloropsis gaditana|type=CDS|length=342bp|location=Sequence derived from alignment at CM002455.1:1350753..1351910- (Nannochloropsis gaditana)
ATGCATTCTTCTTCCCTCTCTCACCTTGCGCCACAGGCTTCGCTACGTCA
AGACGGACGACGAGCTCGCGTGGGCCCTCCCTGCGGATGGTATCGTCCTC
GGCAAGTCCTACGAGATCAAATGGAGGATTCGCCTGGGCCGGGGCGTCGC
GAGCGGCACCCAGCTGCCCCTCACTGTGAGCGTGGCGGATTGGATGGAGG
ACGAGGTCGTAAGTGCCAAGTAGACGCAAATGGGAGGATGTTGGCCCATG
GCTGGTACGGGAGGGTACGCTCTTTGGCTTTTGCTTCTTCGCAATGTGCG
CGGGCAGGAAAATTGTTGGTGGATGCTCAGAGTATTTGTTAA
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Synonyms
Publications