rna5408, rna5408 (mRNA) Nannochloropsis gaditana

Overview
Namerna5408
Unique Namerna5408
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length546
Alignment locationCM002465.1:935070..935673 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101577g2.9732.mrna
Orig protein idgnl|cribi|Naga_101577g2.9732
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:935070..935673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101577g2gene5230Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25278.1cds5395Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5408rna5408-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5408 ID=rna5408|Name=rna5408|organism=Nannochloropsis gaditana|type=mRNA|length=546bp
ATGGATCATCCGAAGCTTCGTGGAGGCCGTGCTGCGCTACGGGCTGCCTG
TCGACTTTCTGACGACCATCACCAGACCCAAGGCGCGCAAAGAAAAGGCG
TTGCAACAGGCCCTGGACACACTGTACGCCGACCTGGCCGTGGATATGCC
CAAGCTGGGTGCGGAAGCTGCCTTGGACCTCGACGAGAAGGAGGACGATG
GGCCCTGCGTGATGAACAAGTTCAATCCACGCGCCAACGCCACGTAGAGA
GGGGCAGGAAGGTCTTGGGAAGGGGGAAAGGGGAAGTCGGTGGGGGGCAC
GGCGGCGTGGTATACATACTGGGAGCGGACAGGGAGCCGGTGCCTGTTCT
TGTCATAATGCGGAAGCATCGTGTTGCTGACAGAGACGAAAAAGATACTG
ACAGTGCCCAGGCGGCTTTAGCTGTCGCTAGGGTCATGGCACCCCCTGGT
GGTATTTCCTCTCTCTCTCGAACAATTCCCTCTCCAAATAAGTTGGGGAT
GAAGAAAGCGCAGGGCAAATATTGCAACATTCGAAGAAACAAATGA
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protein sequence of rna5408

>rna5408-protein ID=rna5408-protein|Name=rna5408|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
MALSSLLYHLDGASTVQHECVEELHLFGRVAFSRFLASRKLMDGKPRGVD
ALKALAMHFAVICYIQHEVLALWCVYVTGSTHHVGSNRVYSAKIAESGSD
QRTA
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mRNA from alignment at CM002465.1:935070..935673-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5408 ID=rna5408|Name=rna5408|organism=Nannochloropsis gaditana|type=mRNA|length=604bp|location=Sequence derived from alignment at CM002465.1:935070..935673- (Nannochloropsis gaditana)
GTCATGTCCACTGCAAGAGCGAACGCGTAGCGACGCGCGGGAGCGGCTTG
GAGACGCTGGGGGCAATATATCCAGCGAAACCATTTTTACAGACACGGAC
ATGTGCGGTCAAGGCATCTCGGGGACGCTCGTGTCGTGGGAAGGTGGTCG
TTGGACGTAAAGGGTATTGAAAGACTGTGACGAGAAGTTAAAACGTGTTA
TTGCCGGTTTACCTCCCCACGACGACGACGGACGTGAACATAAGCTCACC
CCATGGCTTTGAGTTCCTTACTCTACCATCTTGACGGCGCGAGCACGGTG
CAACATGAGTGTGTCGAAGAACTGCACCTTTTCGGACGCGTGGCTTTTTC
CCGGTTCTTGGCAAGCAGGAAGCTTATGGACGGAAAGCCCCGAGGGGTAG
ATGCATTGAAGGCGCTGGCAATGCACTTTGCTGTAATATGTTATATACAA
CATGAAGTCCTTGCATTGTGGTGTGTGTATGTCACCGGTAGCACACACCA
TGTGGGATCAAACCGCGTGTATTCGGCTAAGATAGCTGAAAGTGGCAGTG
ACCAACGAACAGCATGAATTAAATGGACAAAACAAAGCACACGACGCGTG
ACGC
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Coding sequence (CDS) from alignment at CM002465.1:935070..935673-

>rna5408 ID=rna5408|Name=rna5408|organism=Nannochloropsis gaditana|type=CDS|length=315bp|location=Sequence derived from alignment at CM002465.1:935070..935673- (Nannochloropsis gaditana)
ATGGCTTTGAGTTCCTTACTCTACCATCTTGACGGCGCGAGCACGGTGCA
ACATGAGTGTGTCGAAGAACTGCACCTTTTCGGACGCGTGGCTTTTTCCC
GGTTCTTGGCAAGCAGGAAGCTTATGGACGGAAAGCCCCGAGGGGTAGAT
GCATTGAAGGCGCTGGCAATGCACTTTGCTGTAATATGTTATATACAACA
TGAAGTCCTTGCATTGTGGTGTGTGTATGTCACCGGTAGCACACACCATG
TGGGATCAAACCGCGTGTATTCGGCTAAGATAGCTGAAAGTGGCAGTGAC
CAACGAACAGCATGA
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Synonyms
Publications