rna5404, rna5404 (mRNA) Nannochloropsis gaditana

Overview
Namerna5404
Unique Namerna5404
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1281
Alignment locationCM002465.1:926388..928226 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101717g1.116.mrna
Orig protein idgnl|cribi|Naga_101717g1.116
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:926388..928226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101717g1gene5226Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5404rna5404-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25282.1cds5391Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5404 ID=rna5404|Name=rna5404|organism=Nannochloropsis gaditana|type=mRNA|length=1281bp
ATGGGAGGTAGGCAAAGGCAAAGCGAGGATGAGGAGGAGGGAAGGGAGGA
AGAGGAGGAAGAGGAAAGGGAAAAGAAGGTGGAGGAGGGAGGAGAAGCGA
CGATCGTGACGTCGAGGAGTATTGCCGAGAAGGAGGAGGACCACGGAGGG
AAAGTAAAGGGGAGGGATGGAAAGGAGGAGGGCGAGAAAGTGCAGGCGGA
GGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGGGAAAAGGCG
CGCGAGAAGTTTCCCTCCTCGGGTTAGGAGGAGTCGAGGAGAAGAATCCG
GAGGCGAGAGAAGAGATCTGTGCGACGGGGAAGAAGTCGAAGGAGGAGGA
AGCGCAGGAGAAGGCAAGGGGGGGAGAGGAAGTGGAGGGGGAAGGAAAGG
GAGGGAAGACGGGGAGAGACGAGGAGGAAGAGGAGGGACAGGGAGTGGAC
GGTTGGAAGGAAAGCGTGCAAGGGGATGGAAATGGAGGAAGGGGTCTTGG
GGAACGAGAGAAGAGGGAAGGAGGGGAGGGGAACATTGATGGGAAGGAAA
GGAAGGAAGTAGAGGCGCCCGGAGGAGGAGGTACGAAAAGAAGGGAGGGG
AGCGGAACCAGGGAGGGTGGGACGGGCTCATCATCCGTTTCAACGGCTTC
TTCAAACGCTCATTTTGAATTTCCGTTAAGTCGTGATATAATTGCAGCCG
CGACGGCTTTGTCCGGACGCACGGGAAATGTCGAGGGGAAGGGAAAGAAG
GGAGGAGGCAGAGAAGGAGGAGGTTTGGCGCCGAACCCGGAGAGGGAAGA
GAGGAGAACGGGTGCGGAAGGCTTCGATCCGGATAAGCCCATGGTGATTT
ACGTTGTCAGCCCTTTCTTACCTGAGGTTACTGTCAAGATCCGTGGCCGA
GCCAAAGTGAAGAAGTTGACCTCGGCGATTTACCGGTTGTTCTGTGCGCA
CGTGCCCTCGGAGCGCCTTGTATTCGAAGGCGAAGGGTTGAAGCCTAGCC
ACTTAAGATTTATGCTCAGGCGGGACCAGGAGATTGGGGAGAAGGCAGGA
GTGATGGGGATTGATGATGATGGAAATGGAGGAAACAGGAAGGTGGAGGT
GACGTTAGACCCTGCCGGGTACATCGGTGCACAGGGTGTGCGAGATAAAA
GTCAGATTGAGGTGTCGATTTCCACGCCGCTGGTCACTGAGAACGAAGCG
AGAAGGAGGGGACGCCAGTGAGGTTGACGTCGTGCATGGTGGGAAAAGTA
TTCTATAGAAAATATCATCGGGTAACCTTGG
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protein sequence of rna5404

>rna5404-protein ID=rna5404-protein|Name=rna5404|organism=Nannochloropsis gaditana|type=polypeptide|length=342bp
GRRKDGDGDHPPFPPAARVKPEQGSAEGRHAPGPPHGPASSSASSDSLAL
CNLPSWLPSLPPSLPPAASPVEALEARLQKCLRARPSAPISLLEIRRTQR
RAEKRDKDRHADVAWEKQGGREGGREGGREEGLVRVEVVKTLAGIWGRKD
ETRGTQAGLPQGKGMTVRARQGEEEELSSEKRRAGEGAVAPTALAVSARG
TVAVGTKQGGYCRLPGRERGPDGGWDGGRDGGRMVAAPRGRAGGRDGHGR
GSDLVGFPPCPSLRPSLRLTLRPSLRQDGGKRAGVSGEWFSQWEGDAVGG
GGRGRGGGKGGRRAGCKERDGGAFDGSACRAFCQQRRQCHPP
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mRNA from alignment at CM002465.1:926388..928226+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5404 ID=rna5404|Name=rna5404|organism=Nannochloropsis gaditana|type=mRNA|length=1839bp|location=Sequence derived from alignment at CM002465.1:926388..928226+ (Nannochloropsis gaditana)
gggagaaggaaagacggCGACGGtgaccaccctcccttccccccggccGC
GCGCGTCAAGCCCGAACAAGGCAGCGCCGAGGGCCGTCacgcccctggcc
ccccgCACggcccagcctcctcctccgcctcctctgaTTCCCTCGCCTTG
TGCAACCTCCCGTcctggcttccctccctccctccctccctacccccggC
CGCCAGTCCTGTGGAGGCCCTTGAGGCACGTCTCCAGAAATGCCTTCGGG
CGCGCCCTTCGGCCCCGATTTCCCTCTTGGAAATCCGGCGCACGCAACGG
CGAGCGGAGAAACGTGACAAGGACAGACATGCCGACGTGGCCtgggagaa
gcagggcgggagggagggcgggagggagggcgggagggaggaaggtttGG
TACGGGTCGAAGTGGTGAAGACCCTGGCGGGGAtctgggggaggaaggat
gagaCAAGAGGCACGCAGGCAGGACTGCCCCAAGGGAAAGGCATGACCGT
GCGGGCACgtcaaggggaggaggaagagctttCCAGTGAGAAACGTCGGG
CGGGAGAAGGTGCGGTCGCGCCGACGGCCTTGGCCGTGTCTGCTCGAGGC
ACAGTGGCCGTGGGGACCAAACAGGGGGGGTATTGTCGTCTtccaggaag
ggagcgagggccggacggagggtgggacggagggcgggacggagggcgga
TGGTGGCTGCACCGAGGGGGCGGGCCGGCGGAAGGGACGGGCATGGACGG
GGAAGTGACCTCGTTGGATTTCcaccctgtccctccctccgcccctccct
ccgcctcaccctccgtccctccctccgccaagatggggggaaaagagcag
GAGTTTCTGGTGAGTGGTTTTCGCAGTGGGAAGGTGACGCtgtgggaggt
gggggcaggggtaggggcggagggaaaggggggaggcgggcgggctGTAA
AGAGCGTGACGGAGGTGCATTCGACGGCTCTGCTTGCCGTGCGTTTTGTC
AGCAGCGGCGCCAGTGTCACCCTCCGTGACGCCCCAAGCTACCCGGAATT
AAGCACCGGCAGCCAGAAGGGACCGAACGCGGTCGTGTCGGTCGACGTGG
GGGGGAACGTCCACAAACTCCACTTTTCCCGACTTTTGTGGGGAAATTGG
AGCCTGGAGACGGAGTGTCTGTTGGACGGAAAGGCAGGAATGATTCCTGC
CCTtgccatccttccccccgccctctctccctccctcctcgcccgcctcc
ttccccccgcgtCCCCGGTCCCGACGAAGGGGGCGCCGAAAGTCCCAAAA
CCGTTACGGACGAGCTAACGGTTTCCAAGTCtggctccctttcctcctcc
ttctccctgaaCGCCTTGCGGCTCGTCACTAcggccgccgcttcctcttc
ctcctcccttcttccccctccttccctcctccctctctccctccttgcct
tgtcTTCAGAGAAATCTTCCTTTGTTGTCTCCGTCGAGCCCACTGTCAAg
gtcgtttccctccctcattccctccttccctccttccctccttccctcct
tccctccttccctctttccctccttccctctttccctcctttccttcttt
ccctcctcccgtcccgcccccttgtttcctctttcttgtcctATTCTTCA
CAGAGACCCCTGCCCCCGGGCTcacctcttctctccctccctccctccct
ccatccctccctccatccctccatccctccctccttccctccctccaggt
cctccaccggTGGGATCGCCCTCCTCACACCTCTTCCAACGCTCAACCCC
CCACCGCCTGTCTCTCCTGGgcctggctccctccctccc
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Coding sequence (CDS) from alignment at CM002465.1:926388..928226+

>rna5404 ID=rna5404|Name=rna5404|organism=Nannochloropsis gaditana|type=CDS|length=1029bp|location=Sequence derived from alignment at CM002465.1:926388..928226+ (Nannochloropsis gaditana)
gggagaaggaaagacggCGACGGtgaccaccctcccttccccccggccGC
GCGCGTCAAGCCCGAACAAGGCAGCGCCGAGGGCCGTCacgcccctggcc
ccccgCACggcccagcctcctcctccgcctcctctgaTTCCCTCGCCTTG
TGCAACCTCCCGTcctggcttccctccctccctccctccctacccccggC
CGCCAGTCCTGTGGAGGCCCTTGAGGCACGTCTCCAGAAATGCCTTCGGG
CGCGCCCTTCGGCCCCGATTTCCCTCTTGGAAATCCGGCGCACGCAACGG
CGAGCGGAGAAACGTGACAAGGACAGACATGCCGACGTGGCCtgggagaa
gcagggcgggagggagggcgggagggagggcgggagggaggaaggtttGG
TACGGGTCGAAGTGGTGAAGACCCTGGCGGGGAtctgggggaggaaggat
gagaCAAGAGGCACGCAGGCAGGACTGCCCCAAGGGAAAGGCATGACCGT
GCGGGCACgtcaaggggaggaggaagagctttCCAGTGAGAAACGTCGGG
CGGGAGAAGGTGCGGTCGCGCCGACGGCCTTGGCCGTGTCTGCTCGAGGC
ACAGTGGCCGTGGGGACCAAACAGGGGGGGTATTGTCGTCTtccaggaag
ggagcgagggccggacggagggtgggacggagggcgggacggagggcgga
TGGTGGCTGCACCGAGGGGGCGGGCCGGCGGAAGGGACGGGCATGGACGG
GGAAGTGACCTCGTTGGATTTCcaccctgtccctccctccgcccctccct
ccgcctcaccctccgtccctccctccgccaagatggggggaaaagagcag
GAGTTTCTGGTGAGTGGTTTTCGCAGTGGGAAGGTGACGCtgtgggaggt
gggggcaggggtaggggcggagggaaaggggggaggcgggcgggctGTAA
AGAGCGTGACGGAGGTGCATTCGACGGCTCTGCTTGCCGTGCGTTTTGTC
AGCAGCGGCGCCAGTGTCACCCTCCGTGA
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Synonyms
Publications