rna540, rna540 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna540
Unique Name	rna540
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1052
Alignment location	CM002455.1:1347920..1350823 +

Link to JBrowse

Properties


Property Name	Value
Product	peptide-n -(n-acetyl-beta-glucosaminyl)asparagine amidase
Orig transcript id	gnl\|cribi\|Naga_100332g2.10246.mrna
Orig protein id	gnl\|cribi\|Naga_100332g2.10246
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1347920..1350823 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100332g2	gene521	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna540	rna540-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30131.1	cds540	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1347920..1350823+
coding sequence from alignment at CM002455.1:1347920..1350823+

mRNA sequence

>rna540 ID=rna540|Name=rna540|organism=Nannochloropsis gaditana|type=mRNA|length=1052bp
CCTGACCGCCATCGTTTCTCATCGCTTATTTCCCCCGCTCCTTGACGTGC
CTATACCTCCATCATACTATCCCAGGGGTGAAGTGCTTGGTGGCTTGTAA
ATTACTGCATATTTGCGTATCTCTGTCATAGCAACAAGATGAACGATGTT
CTAAATCAAGACCATCAGCCGGAGGAGCTCCGGCGCGTGCGCGTAGACAT
GGGAACACTAGACAGGCACAAACAACAATTCGTAGAATTCCTTGAAGCGG
AAGATGGTCCGGCTAATTACAAGGATAGCATCGCGCACACCCTAAGCAAG
AAGGGCAGGCGCGTCGTGGTCAATCTGAACGATTTGCGGGAATTCGACGT
GGAATTGGCACGCCGCGTGATTACGTCACCGCTAGAATACCTGCTCGCTT
TAGAGACCGCTGTAAAAGAGGTAGCGCAGCGCCTGGACCCAAGTTTTGGG
AAATTGCTTTCGCAGCACGACCAGTTAAAAGTGGGCTTCGATGGTGCCTT
TGGGAGGAACCATGTGTCTCCGCGCGGGCTCACCTCCAGGGTAGGAGGGA
GAGAGGGAGAGAGGGACGATGTGTCGCAGAGGGATGTATGTGCATTGCAC
AGGTGCTAGTCACAAACATCCTGTCAATGATTTCCTCGCCACCTGACCGT
CTACCTCCTCCCCTCCCCCCCCGGCCGGCCTCCTTCCCTCCCTCCCTCCC
CCAGCGCCTGGCTCAACTCGTGTGCGTGGAAGGCATCGTCACCAAATGCT
CCCTAGTCCGCCCCAAGGTCGTCCGCTCAGTACACTACTGCCCCGCCAAG
CAAGAGCACCTGGTCCGAGACTACAGGGACGCCACCTCCATCTCCATCGG
CCTGGAAGCGGGGGGCCGGCCCATGTTGCCGACGAACAACACGTACCCCA
ACAAGGACAAGGACGGGCACCCCTTGGAGACAGAGTTTGGGCTTTCCACC
TACAAGGACCATCAGAGCGTGACCATCCAGGAGATGCCGGAGCGGGCCCC
CCTGGGCGAGATGCCTCGGAGCATCTCCTTGGTCCTGGAGCATGACTTGG
TG

protein sequence of rna540

>rna540-protein ID=rna540-protein|Name=rna540|organism=Nannochloropsis gaditana|type=polypeptide|length=709bp
MQLACRDFRRGVGVILPSSAHPQPPCSSTKPCALPALRRAPVARIYGPEL
LLLVCILLFAPHPSVATFFGGTSACRSPSSHSSIWPLCFGAPSSSSGSGS
GPASVRSNSASARRSPSLCSSASPSSSSSSSSASSIPPKSRTAKPTFLSS
SSSTSSHPPSSAPPSPPIPSRPRVHITRDDILPPSAGTAAEGALSGQVEE
ENKEDDEAAPKPITCMSYDVEGVAALASFVPASSPSTSSPPRPAAAPPTS
RFHYLGGNAGQFLKYLQQELGQAKAEASQISRRAVMDLEAEKEGLAALWR
EGRLLVEDPHTLDRINNKTSFGELLMTYTHRMQRADEDPLTSQDLRAFLR
AEYGEVPTEEATYAPDRRPAEAMAALKRLLEWFKEGFPYYKSTCLHCGHV
GPSHSPHPPPAPSSPTAAEAPPISPSQPNHMIGVVAPSPPERALNATLTE
IYVCGACGKIYRFPRSVSLRHVLQTRRGRCGEYSRLFFKTTEALGYVSRW
VVDWEDHVWVEVRLPGKGWVHLDPCEAAVNEPLLYQGWGKKQTYILAFSR
EEVEDVTREYTTDWAGALGRRRVSEEEMSDLLACANGVLQGGGERGEGGK
EGEGRGGDEKRNAGKNAGQTEKRRRSSGTSPSAGTDTGGKGKGGLGSGGG
REGGRDGKDPAAVTAPVASKASSTSSPKPTAGAGAKGTGASKPMRPPSTA
SSASPTEGG

mRNA from alignment at CM002455.1:1347920..1350823+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna540 ID=rna540|Name=rna540|organism=Nannochloropsis gaditana|type=mRNA|length=2904bp|location=Sequence derived from alignment at CM002455.1:1347920..1350823+ (Nannochloropsis gaditana)
TTTTGGTGGGATGGGATTTCCATAGCCTCCCCTGGAACGCCAAGATCGAC
GGTGCTGCTATCTTTCTTAAATACGCACACGCACGTCACTGTTATCCACG
CCCTATCATGGTTTAAATCCATACATTCTTGCAGAAGCAGGTGTAGGTGA
CAGACACATCATACTTATGGCGCTGGATCTTTTTCGTCGGAGATAACACC
ATGCAACTGGCATGTCGAGATTTTCGTCGGGGAGTGGGTGTGATACTCCC
TTCTTCAGCCCACCCGCAACCCCCATGCTCCTCCACGAAACCATGCGCCT
TGCCCGCTTTGCGGAGGGCACCAGTGGCCAGAATCTACGGTCCTGAACTC
CTGCTCCTTGTatgcatcctcctcttcgctccccatccctccgttGCGAC
CTTTTTTGGCGGGACCAGTGCGTGTCGAAGCCCATCATCCCACTCGTCTA
TATGGCCCCTATGTTTTggggccccttcctcctcatcgggCTCAGGGAGC
GGGCCAGCAAGCGTGCGTAGCAACTCGGCAAGCGCTCGGAGatccccctc
cttgtgctcttcggcctccccctcctcctcctcctcctcctcctcagcga
GCTCCATCCCGCCGAAATCCAGGACCGCGAAGCCAACCTtcctttcatcc
tcctcctccacctcctctcacCCACCTTCGTCtgccccaccttccccccc
catcccctcgcGGCCCCGCGTGCACATAACACGGGACgatatcctccctc
ccagcgcgGGTACGGCCGCCGAAGGGGCACTATCAGggcaagtggaggag
gagaacaaggaggacgacgaggcagCGCCCAAACCCATCACTTGCATGTC
CTACGACGTGGAGGGTGTGGCCGCGCTTGCCTCTTTCGTGccagcttcct
ctccctcgacctcttcccctcctcgacctgccgccgccccccccacgtcc
cgcTTCCATTATTTGGGCGGCAACGCTGGGCAATTCCTCAAATACTTGCA
GCAGGAGCTAGGGCaggcgaaggcggaggcaAGTCAGATTTCGCGGCGGG
CggtgatggatttggaggcggagaaggaaggttTGGCCGCCTTGTGGCGC
GAAGGGCGGCTCTTGGTGGAGGACCCGCACACCTTGGACCGGATCAACAA
CAAAACGTCCTTTGGGGAGCTGCTGATGACGTACACGCACCGGATGCAAC
GCGCGGACGAGGATCCGCTTACGTCTCAGGACCTGCGCGCTTTCCTCCGT
GCTGAGTACGGGGAGGTGCccacggaggaagcgacCTATGCCCCCGACCG
AAGGCCCGCagaggccatggcggcgcTCAAGCGGCTTCTCGAATGGTTCA
AAGAGGGGTTCCCATACTATAAATCGACGTGCCTTCACTGCGGACACGTC
GGaccttcccattccccccacccacccccggcaccttcctcgcccacggc
gGCCGAGGCCCCCCCCATCTCCCCATCCCAGCCCAACCACATGATCGGCG
tcgtcgccccctcccctcccgagcGGGCGCTGAATGCCACCCTCACGGAG
ATCTACGTCTGCGGGGCGTGCGGGAAAATCTACCGTTTCCCccgctccgt
ctccctccggcACGTCCTCCAGACCCGGCGGGGCCGGTGCGGCGAATATT
CCCGACTCTTTTTCAAAACCACCGAGGCACTCGGCTACGTCTCCCGCTGG
GTGGTGGACTGGGAGGATCATGTGTGGGTGGAAGTGCGGCTGCCCGGCAA
AGGGTGGGTGCATTTGGACCCGTGCGAGGCGGCGGTGAACGAACCTTTGC
TGTACCAAGGGTGGGGCAAAAAACAAACCTATATCCTGGCCTTttccagg
gaggaggtggaggatgtgACGCGGGAGTACACCACGGACTGGGCTGGCGC
GTTGGGGCGGCGTCgggtgagcgaggaggagatgagcgACCTCTTGGCGT
GTGCAAATGGGGTgctgcagggagggggggagagaggggagggagggaag
gagggagaggggaggggaggggatgaaaaGCGGAATGCAGGGAAGAACGC
TGGTCAGACGGAAAaacggaggagaagcagtgGCACCAGCCCCAGTGCCG
GCACCGAtacgggggggaagggcaagggaggcctggggtcgggcggtggg
agggagggagggagggacggaaaggatcCTGCGGCAGTCACGGCCCCCGT
TGCGTCGAAGGCTTCGAGCACGAGCTCCCCCAAGCCAACCGCGGGCGCGG
GCGCGAAAGGAACGGGCGCATCGAAGCCAATGCGGCCGccatccaccgcc
tcttcggCGAGtccgacggagggaggatgagggaataGGCCCCAGGcgga
gagtggagggaggaaggggtgtaTAGAGGGGACCTGTGGACATGACGGCA
AATAAGGCAGTGTCAGAGACATGCAGGGGGCAACGAGGTGGCAGACGGAG
GTTGCCCGCGAGCacgggagaagagagacATAAGACCACGCATCGGGGAA
GACGTGCTTCCCACCCCGTTCCTGCGACtcgaaagaaaggagggatggtc
GGCAAATCTGGTGATTTCACTTCGGACCTAACTGTGTGTTTCGTAGGAGC
GCTTCGACAGTCACTCGCATTTGGGGGAGTGACGCGCCGACTCTAGACAC
AAGGGCGGTTTTAAAAATACAGGGGACAAAGAAATTTCACATGCAAATAA
AAAGGGGCCGTACGTTGAAGAGGTACGTAGGGAAGGACTTCAACATGTTT
TCAGGGTCATGTATAGACATTCCTATTTCCGCTCGAGATTATTCGCACAA
TACTCACTATTGCGTTTCGTGGACGGGCTCAGACCACCATGTGAATTAAT
TCTTTGTTTTAAACTCCTTGAGCTCCTTGATAAAGCCATTCATTTGGTTG
CATA

Coding sequence (CDS) from alignment at CM002455.1:1347920..1350823+

>rna540 ID=rna540|Name=rna540|organism=Nannochloropsis gaditana|type=CDS|length=2130bp|location=Sequence derived from alignment at CM002455.1:1347920..1350823+ (Nannochloropsis gaditana)
ATGCAACTGGCATGTCGAGATTTTCGTCGGGGAGTGGGTGTGATACTCCC
TTCTTCAGCCCACCCGCAACCCCCATGCTCCTCCACGAAACCATGCGCCT
TGCCCGCTTTGCGGAGGGCACCAGTGGCCAGAATCTACGGTCCTGAACTC
CTGCTCCTTGTatgcatcctcctcttcgctccccatccctccgttGCGAC
CTTTTTTGGCGGGACCAGTGCGTGTCGAAGCCCATCATCCCACTCGTCTA
TATGGCCCCTATGTTTTggggccccttcctcctcatcgggCTCAGGGAGC
GGGCCAGCAAGCGTGCGTAGCAACTCGGCAAGCGCTCGGAGatccccctc
cttgtgctcttcggcctccccctcctcctcctcctcctcctcctcagcga
GCTCCATCCCGCCGAAATCCAGGACCGCGAAGCCAACCTtcctttcatcc
tcctcctccacctcctctcacCCACCTTCGTCtgccccaccttccccccc
catcccctcgcGGCCCCGCGTGCACATAACACGGGACgatatcctccctc
ccagcgcgGGTACGGCCGCCGAAGGGGCACTATCAGggcaagtggaggag
gagaacaaggaggacgacgaggcagCGCCCAAACCCATCACTTGCATGTC
CTACGACGTGGAGGGTGTGGCCGCGCTTGCCTCTTTCGTGccagcttcct
ctccctcgacctcttcccctcctcgacctgccgccgccccccccacgtcc
cgcTTCCATTATTTGGGCGGCAACGCTGGGCAATTCCTCAAATACTTGCA
GCAGGAGCTAGGGCaggcgaaggcggaggcaAGTCAGATTTCGCGGCGGG
CggtgatggatttggaggcggagaaggaaggttTGGCCGCCTTGTGGCGC
GAAGGGCGGCTCTTGGTGGAGGACCCGCACACCTTGGACCGGATCAACAA
CAAAACGTCCTTTGGGGAGCTGCTGATGACGTACACGCACCGGATGCAAC
GCGCGGACGAGGATCCGCTTACGTCTCAGGACCTGCGCGCTTTCCTCCGT
GCTGAGTACGGGGAGGTGCccacggaggaagcgacCTATGCCCCCGACCG
AAGGCCCGCagaggccatggcggcgcTCAAGCGGCTTCTCGAATGGTTCA
AAGAGGGGTTCCCATACTATAAATCGACGTGCCTTCACTGCGGACACGTC
GGaccttcccattccccccacccacccccggcaccttcctcgcccacggc
gGCCGAGGCCCCCCCCATCTCCCCATCCCAGCCCAACCACATGATCGGCG
tcgtcgccccctcccctcccgagcGGGCGCTGAATGCCACCCTCACGGAG
ATCTACGTCTGCGGGGCGTGCGGGAAAATCTACCGTTTCCCccgctccgt
ctccctccggcACGTCCTCCAGACCCGGCGGGGCCGGTGCGGCGAATATT
CCCGACTCTTTTTCAAAACCACCGAGGCACTCGGCTACGTCTCCCGCTGG
GTGGTGGACTGGGAGGATCATGTGTGGGTGGAAGTGCGGCTGCCCGGCAA
AGGGTGGGTGCATTTGGACCCGTGCGAGGCGGCGGTGAACGAACCTTTGC
TGTACCAAGGGTGGGGCAAAAAACAAACCTATATCCTGGCCTTttccagg
gaggaggtggaggatgtgACGCGGGAGTACACCACGGACTGGGCTGGCGC
GTTGGGGCGGCGTCgggtgagcgaggaggagatgagcgACCTCTTGGCGT
GTGCAAATGGGGTgctgcagggagggggggagagaggggagggagggaag
gagggagaggggaggggaggggatgaaaaGCGGAATGCAGGGAAGAACGC
TGGTCAGACGGAAAaacggaggagaagcagtgGCACCAGCCCCAGTGCCG
GCACCGAtacgggggggaagggcaagggaggcctggggtcgggcggtggg
agggagggagggagggacggaaaggatcCTGCGGCAGTCACGGCCCCCGT
TGCGTCGAAGGCTTCGAGCACGAGCTCCCCCAAGCCAACCGCGGGCGCGG
GCGCGAAAGGAACGGGCGCATCGAAGCCAATGCGGCCGccatccaccgcc
tcttcggCGAGtccgacggagggaggatga

Synonyms

Publications