rna54, rna54 (mRNA) Nannochloropsis gaditana

Overview
Namerna54
Unique Namerna54
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length276
Alignment locationCM002455.1:160651..160908 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100634g1.4698.mrna
Orig protein idgnl|cribi|Naga_100634g1.4698
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:160651..160908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100634g1gene53Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30621.1cds54Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna54rna54-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna54 ID=rna54|Name=rna54|organism=Nannochloropsis gaditana|type=mRNA|length=276bp
ATGCGGAGCACAGAACTGATCGGCGGTTTAATGAGGAGGGATGTGTATGC
GTGTATGCGTGTGTGTCAGTACCTGTACAAGATAGATGATTGCGAGACAC
ACAGCAGGCCTGAACGAGTGCGTCTCTGCCACCCTGAATGTTTTCCGAAT
GTTCCCAGTGGAATGAAAGGAAATGCGGCAGAGTCGGTAAAGGGGCGAGT
TCTGAGAGGAAGCTTCGACCGTTGCGCCGTACCCAACGAGACTTGGGTGC
ATAAAGGGATGTACGTTTGGGGATAA
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protein sequence of rna54

>rna54-protein ID=rna54-protein|Name=rna54|organism=Nannochloropsis gaditana|type=polypeptide|length=85bp
MEDAPATRRHLPHCHSSGLGRARADEKHRRPACPTFQTCPAGVRDGGRVV
ARATVVIEGPRGGGIKCHAVERAEQGKGRGRADAV
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mRNA from alignment at CM002455.1:160651..160908-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna54 ID=rna54|Name=rna54|organism=Nannochloropsis gaditana|type=mRNA|length=258bp|location=Sequence derived from alignment at CM002455.1:160651..160908- (Nannochloropsis gaditana)
ATGGAAGACGCCCCTGCAACCCGACGCCATCTCCCCCATTGCCATTCGAG
CGGCCTCGGGCGGGCCCGCGCCGATGAAAAACACCGACGCCCTGCCTGTC
CCACCTTCCAAACGTGCCCTGCGGGTGTGAGGGATGGGGGGAGGGTGGTA
GCGAGGGCGACGGTCGTGATTGAAGGCCCAAGAGGAGGAGGCATAAAATG
CCATGCGGTGGAAAGGGCGGAGCAGGGAAAGGGTCGAGGAAGAGCGGATG
CTGTCTAG
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Coding sequence (CDS) from alignment at CM002455.1:160651..160908-

>rna54 ID=rna54|Name=rna54|organism=Nannochloropsis gaditana|type=CDS|length=258bp|location=Sequence derived from alignment at CM002455.1:160651..160908- (Nannochloropsis gaditana)
ATGGAAGACGCCCCTGCAACCCGACGCCATCTCCCCCATTGCCATTCGAG
CGGCCTCGGGCGGGCCCGCGCCGATGAAAAACACCGACGCCCTGCCTGTC
CCACCTTCCAAACGTGCCCTGCGGGTGTGAGGGATGGGGGGAGGGTGGTA
GCGAGGGCGACGGTCGTGATTGAAGGCCCAAGAGGAGGAGGCATAAAATG
CCATGCGGTGGAAAGGGCGGAGCAGGGAAAGGGTCGAGGAAGAGCGGATG
CTGTCTAG
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Synonyms
Publications