|
|
Properties
| Property Name | Value |
|---|
| Product | calcium calmodulin-dependent protein kinase ii |
| Orig transcript id | gnl|cribi|Naga_100240g6.2371.mrna |
| Orig protein id | gnl|cribi|Naga_100240g6.2371 |
| Gene | CDPK |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002465.1 | supercontig | CM002465.1:898167..900711 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5393 ID=rna5393|Name=rna5393|organism=Nannochloropsis gaditana|type=mRNA|length=987bp
ATGGCTTTCCGCTACGCCGCATGTTTCCTCCTCACCATCGCCTTCATAAT
TATCCTAAGTCCTGTCTTCGCATTTAAGTCCTCCCTATGCACGCGTGGAT
TGTCTTCCTACGTCGCAGTCGGGCGCCTGTGTCCAAAGAGCAGCATTACC
AGTCTGAGCAACGGCAATGGAAGGCGACCTCCCTTCCCTCCCTCCAGAAC
TATCTTTCCACCACTCTTTGCATCCGACAGCGGGAACAGCGGAGAAGGAA
AAGAAGAAGAGGAGGGAGGTGCGGAAGAAGGAAGCTTGTTGGACAAGGCC
AAATCCTTTTTTTCGGACCCGGAAAATCGGAAGGATACTACGCTCTTCGT
CACCTCCTTCCTCATCTCCTTAGGGATCAGGGCTTTCATTGTCGAGCCCC
GCTACATTCCATCCCTGAGCATGTACCCTACCTTCCTGGTGGGTGACCAA
TTGGCCGTGGAGAAAGTGACCAAGACATACAAAAACTACGAACGGGGGGA
CGTGGTAGTGTTCAATCCCACGCAAGGCTATCAAGAATATGTGAGCCGAG
ACCCGTACATCACAGACAAAAGCCGCATTAACGAGGCCTTGATCAAGCGT
ATCATTGCGAAAGGCGGGGACGTGGTCGAGGTGAAAGACGGACAACTCTT
TGTGAACGGCGTGGCGCAAGAGGAGAAGTACATTGCGGAGGGCCCGGCCT
ATGTCTGGGGTCCGCGACGGGTCCCGGATGGGATGTACATGGTGCTGGGG
GACAACAGAAATCATTCGTTGGACTCGCACATCTGGGGCTTTCTGCCCAA
GGAGAACATTATTGGCCGGGCGATCTGTAAGTATTGGCCACCCTGGCGGT
TGGGGCACTGTGGACACACGCACACAAAGAAAGCGATTCTTATGCGTATG
GATGACTGGAAGCAAGCTCAACAAAGAACCCGCGACGAGATTGCTACCAG
GACAGTGGGCGTACCCAAGGCGTGTCTGCATGCATAG back to topprotein sequence of rna5393 >rna5393-protein ID=rna5393-protein|Name=rna5393|organism=Nannochloropsis gaditana|type=polypeptide|length=432bp
MASRSFPSISFQRIMAFVKARPGIVAGGALLAAYFLDPDERSEDDVDELP
LPSFHNKLLQNQNRSNRHILPPSNLIHSVTAGCLSAKKSLDTHPTGTEGT
LVTNAAHFESLYQLGPKLGTGAFAVVYKCTPKSTSSNVAAVKVFDLSRVP
AKKQARIRADIHKEYTILQSLQHDRIVQVYDLFEAPTQNKVYVVMEFCQG
GELFERIVAKTTYNEKEARDVIRTLLTALAFCHEDAGVVHRDLKPENLLL
ESETDDLHIKVADFGAACLITESDCLSHYCGTPSYTAPEILARQKYGPKV
DVWSAGIIAYILLGGYPPFADNQDQLRKRHTFYFHSPEWDAVSPEAKDLI
SRLLHRDPQQRLSAREALAHAWFEKEKEELEDRELPAAKEGIEKFNALRW
VGREGGREGGKEGGREGGREGRTMQGPRLQPC back to topmRNA from alignment at CM002465.1:898167..900711+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5393 ID=rna5393|Name=rna5393|organism=Nannochloropsis gaditana|type=mRNA|length=2545bp|location=Sequence derived from alignment at CM002465.1:898167..900711+ (Nannochloropsis gaditana)
GAATCTCCTCTCAGCCTCCCCACCGAATTCAAACTACCGCCTCCTAATTT
TCTATACTTCGCACTGTGTATTTCCTTGTCATAACAGGCGTAGTGGAGGG
ATAGACGAGATGGCTTCTCGATCATTCCCATCGATTTCGTTTCAGCGCAT
TATGGCTTTTGTGAAAGCTAGGCCGGGTATTGTAGCGGGCGGAGCTCTAC
TAGCAGCGTACTTCCTTGACCCGGACGAAAGAAGTGAAGACGATGTGGAT
GAGCTACCCTTGCCAAGCTTCCATAATAAATTATTACAAAATCAGAACCG
CTCCAATCGTCATATCCTGCCGCCCTCAAACCTAATCCACAGTGTCACAG
CTGGCTGTCTTTCTGCAAAGAAGAGCCTCGACACGCACCCAACTGGAACT
GAGGGGACTCTTGTGACCAATGCGGCCCACTTCGAAAGCCTTTATCAGCT
AGGTCCCAAGTTAGGGACAGGCGCGTTTGCAGTCGTGTATAAATGCACGC
CAAAATCCACGTCGAGCAACGTGGCCGCAGTGAAAGTTTTTGATTTGAGT
CGGGTTCCCGCGAAGAAGCAAGCCAGGATCAGGGCGGACATCCATAAGGT
AAGTGTGGATCCCATGGCCAACTTTTTCCAGAAAAATCCACCACGTCCTT
TAGACAAGCCACACATTATCTAAGGTGCCGTGTAAAGGTCTGGACAGAGA
GCCTGTGGAAACAGTTTAAGGCGTCACCCGGTCCCTAAACCCTTTCTGTG
CAGGAGTACACCATCCTCCAATCCCTCCAGCACGATCGCATCGTCCAAGT
CTACGACCTGTTCGAGGCCCCCACGCAAAACAAGGTGTACGTGGTGATGG
AATTTtgccaaggcggggagcTCTTCGAACGCATCGTCGCCAAGACGACC
TACAACGAGAAAGAAGCCCGAGACGTGATCCGGACGCTCCTGACCGCCCT
GGCCTTCTGCCACGAGGACGCAGGGGTCGTGCACAGGGATTTGAAGGTGA
GAAAGGACACGTATGGGAGACATTGGGCGGCCGGAgcccgggggcgggga
gggaggactggTGCTGTGTGCTTCCCTAGGGCATGCTCCTGTCGCTGTCT
TAGTGCCATCCATCCGCTCAgtatttctccctcctgacccttTTCAGCCG
GAGAATCTCCTCCTGGAAAGCGAAACGGACGACCTGCACATCAAAGTGGC
GGACTTCGGGGCCGCCTGTCTGATCACCGAATCCGACTGTCTGTCTCACT
ACTGCGGCACGCCTTCCTACACGGCGCCTGGTGCGGAGAGATttgcctgt
cctcccttcttcctctccctcccttcctccctcctccccccgtttcctcc
ttcctttccttagCTTTTCTTCCGTTTCTTTCCGTCAGAGATTCTGGCTC
GTCAGAAATATGGGCCCAAGGTGGACGTGTGGAGCGCCGGCATCATTGCC
TACATCCTCTTGGGAGGGTACCCTCCTTTTGCCGACAACCAGGACCAGCT
CCGAAAGGTAAACGGCCAGGCCTTTCTGGCTCAACGGCTAGGATTTTGAA
ATGAGAGCGCGGCCTCGGGTTCGTTTGCCTCCTACTGAGCACCCTTTCGA
TCGCTTTCCCTGTATTCTCTTTGCCTtgtctctccctctgtcAGCGGCAC
ACCTTCTATTTCCATTCGCCCGAATGGGATGCTGTGTCCCCCGAGGCCAA
AGACCTCATTAGCCGTCTTCTCCACCGAGACCCGCAGCAGAGGCTCTCGG
CgcgggaggccttggcccatgcctggttcgagaaggagaaagaggagttG
GAAGATCGGGAGCTGCCGGCCgcaaaggaagggatcgAGAAATTCAACGC
CTTgcggtgggtggggagggagggagggagggagggagggaaggagggag
ggagggagggagggagggagggaaggactaTGCAAGGGCCACGTCTTCAG
CCATGCTAGGGGCCCGGGATCTATCTGTTCCACCTAAGCATCCATCCCGC
CCCAtactgcccccccccgcccctcccttcctgtctcaCCGCATTCGTTT
TAGGAAATTGCGCGGGGCGGTGAAAGCCATCATGGCCACGGCCAAGATGA
GAAAGCTTTTGTCCAGGGAGGAATAGGGGAAAATGCCGCAGACAAGAGtg
aaaagcaagggaggagagggcgtcaTTGTAAGGGCAACAATTTGGACAGG
TCCTTAAGAACGAGGCCCCGCCAGGGtcggggcagggggaagggaggaag
gggagaaggaaagagagggagggaaaggaccgTGGGTGGACGACCTGGAC
CTGGTGCTTCGTTCCCTCCAACGGGCGACAGGGATACGGCGGTCGTACGT
AAGACTAGCGAAGCCTCCGACTTAAAATTTGGGCGCGGGGTGCAAGGGTG
TGTGCCAGGAGGGTGGCTTGAAGGttcaggagaggaagggtaccgggggg
aggaggaatgccTTGGTGGTGGTCGTTGAGGACATAGCTCCCCTTGCTTT
GTACAGTGCACAGAAAGAAATGAATTTTCCGACGTGGCTCGACGT back to topCoding sequence (CDS) from alignment at CM002465.1:898167..900711+ >rna5393 ID=rna5393|Name=rna5393|organism=Nannochloropsis gaditana|type=CDS|length=6495bp|location=Sequence derived from alignment at CM002465.1:898167..900711+ (Nannochloropsis gaditana)
ATGGCTTCTCGATCATTCCCATCGATTTCGTTTCAGCGCATTATGGCTTT
TGTGAAAGCTAGGCCGGGTATTGTAGCGGGCGGAGCTCTACTAGCAGCGT
ACTTCCTTGACCCGGACGAAAGAAGTGAAGACGATGTGGATGAGCTACCC
TTGCCAAGCTTCCATAATAAATTATTACAAAATCAGAACCGCTCCAATCG
TCATATCCTGCCGCCCTCAAACCTAATCCACAGTGTCACAGCTGGCTGTC
TTTCTGCAAAGAAGAGCCTCGACACGCACCCAACTGGAACTGAGGGGACT
CTTGTGACCAATGCGGCCCACTTCGAAAGCCTTTATCAGCTAGGTCCCAA
GTTAGGGACAGGCGCGTTTGCAGTCGTGTATAAATGCACGCCAAAATCCA
CGTCGAGCAACGTGGCCGCAGTGAAAGTTTTTGATTTGAGTCGGGTTCCC
GCGAAGAAGCAAGCCAGGATCAGGGCGGACATCCATAAGGAGTACACCAT
CCTCCAATCCCTCCAGCACGATCGCATCGTCCAAGTCTACGACCTGTTCG
AGGCCCCCACGCAAAACAAGGTGTACGTGGTGATGGAATTTtgccaaggc
ggggagcTCTTCGAACGCATCGTCGCCAAGACGACCTACAACGAGAAAGA
AGCCCGAGACGTGATCCGGACGCTCCTGACCGCCCTGGCCTTCTGCCACG
AGGACGCAGGGGTCGTGCACAGGGATTTGAAGCCGGAGAATCTCCTCCTG
GAAAGCGAAACGGACGACCTGCACATCAAAGTGGCGGACTTCGGGGCCGC
CTGTCTGATCACCGAATCCGACTGTCTGTCTCACTACTGCGGCACGCCTT
CCTACACGGCGCCTGAGATTCTGGCTCGTCAGAAATATGGGCCCAAGGTG
GACGTGTGGAGCGCCGGCATCATTGCCTACATCCTCTTGGGAGGGTACCC
TCCTTTTGCCGACAACCAGGACCAGCTCCGAAAGCGGCACACCTTCTATT
TCCATTCGCCCGAATGGGATGCTGTGTCCCCCGAGGCCAAAGACCTCATT
AGCCGTCTTCTCCACCGAGACCCGCAGCAGAGGCTCTCGGCgcgggaggc
cttggcccatgcctggttcgagaaggagaaagaggagttGGAAGATCGGG
AGCTGCCGGCCgcaaaggaagggatcgAGAAATTCAACGCCTTgcggtgg
gtggggagggagggagggagggagggagggaaggagggagggagggaggg
agggagggagggaaggactaTGCAAGGGCCACGTCTTCAGCCATGCTAGA
TGGCTTCTCGATCATTCCCATCGATTTCGTTTCAGCGCATTATGGCTTTT
GTGAAAGCTAGGCCGGGTATTGTAGCGGGCGGAGCTCTACTAGCAGCGTA
CTTCCTTGACCCGGACGAAAGAAGTGAAGACGATGTGGATGAGCTACCCT
TGCCAAGCTTCCATAATAAATTATTACAAAATCAGAACCGCTCCAATCGT
CATATCCTGCCGCCCTCAAACCTAATCCACAGTGTCACAGCTGGCTGTCT
TTCTGCAAAGAAGAGCCTCGACACGCACCCAACTGGAACTGAGGGGACTC
TTGTGACCAATGCGGCCCACTTCGAAAGCCTTTATCAGCTAGGTCCCAAG
TTAGGGACAGGCGCGTTTGCAGTCGTGTATAAATGCACGCCAAAATCCAC
GTCGAGCAACGTGGCCGCAGTGAAAGTTTTTGATTTGAGTCGGGTTCCCG
CGAAGAAGCAAGCCAGGATCAGGGCGGACATCCATAAGGAGTACACCATC
CTCCAATCCCTCCAGCACGATCGCATCGTCCAAGTCTACGACCTGTTCGA
GGCCCCCACGCAAAACAAGGTGTACGTGGTGATGGAATTTtgccaaggcg
gggagcTCTTCGAACGCATCGTCGCCAAGACGACCTACAACGAGAAAGAA
GCCCGAGACGTGATCCGGACGCTCCTGACCGCCCTGGCCTTCTGCCACGA
GGACGCAGGGGTCGTGCACAGGGATTTGAAGCCGGAGAATCTCCTCCTGG
AAAGCGAAACGGACGACCTGCACATCAAAGTGGCGGACTTCGGGGCCGCC
TGTCTGATCACCGAATCCGACTGTCTGTCTCACTACTGCGGCACGCCTTC
CTACACGGCGCCTGAGATTCTGGCTCGTCAGAAATATGGGCCCAAGGTGG
ACGTGTGGAGCGCCGGCATCATTGCCTACATCCTCTTGGGAGGGTACCCT
CCTTTTGCCGACAACCAGGACCAGCTCCGAAAGCGGCACACCTTCTATTT
CCATTCGCCCGAATGGGATGCTGTGTCCCCCGAGGCCAAAGACCTCATTA
GCCGTCTTCTCCACCGAGACCCGCAGCAGAGGCTCTCGGCgcgggaggcc
ttggcccatgcctggttcgagaaggagaaagaggagttGGAAGATCGGGA
GCTGCCGGCCgcaaaggaagggatcgAGAAATTCAACGCCTTgcggtggg
tggggagggagggagggagggagggagggaaggagggagggagggaggga
gggagggagggaaggactaTGCAAGGGCCACGTCTTCAGCCATGCTAGAT
GGCTTCTCGATCATTCCCATCGATTTCGTTTCAGCGCATTATGGCTTTTG
TGAAAGCTAGGCCGGGTATTGTAGCGGGCGGAGCTCTACTAGCAGCGTAC
TTCCTTGACCCGGACGAAAGAAGTGAAGACGATGTGGATGAGCTACCCTT
GCCAAGCTTCCATAATAAATTATTACAAAATCAGAACCGCTCCAATCGTC
ATATCCTGCCGCCCTCAAACCTAATCCACAGTGTCACAGCTGGCTGTCTT
TCTGCAAAGAAGAGCCTCGACACGCACCCAACTGGAACTGAGGGGACTCT
TGTGACCAATGCGGCCCACTTCGAAAGCCTTTATCAGCTAGGTCCCAAGT
TAGGGACAGGCGCGTTTGCAGTCGTGTATAAATGCACGCCAAAATCCACG
TCGAGCAACGTGGCCGCAGTGAAAGTTTTTGATTTGAGTCGGGTTCCCGC
GAAGAAGCAAGCCAGGATCAGGGCGGACATCCATAAGGAGTACACCATCC
TCCAATCCCTCCAGCACGATCGCATCGTCCAAGTCTACGACCTGTTCGAG
GCCCCCACGCAAAACAAGGTGTACGTGGTGATGGAATTTtgccaaggcgg
ggagcTCTTCGAACGCATCGTCGCCAAGACGACCTACAACGAGAAAGAAG
CCCGAGACGTGATCCGGACGCTCCTGACCGCCCTGGCCTTCTGCCACGAG
GACGCAGGGGTCGTGCACAGGGATTTGAAGCCGGAGAATCTCCTCCTGGA
AAGCGAAACGGACGACCTGCACATCAAAGTGGCGGACTTCGGGGCCGCCT
GTCTGATCACCGAATCCGACTGTCTGTCTCACTACTGCGGCACGCCTTCC
TACACGGCGCCTGAGATTCTGGCTCGTCAGAAATATGGGCCCAAGGTGGA
CGTGTGGAGCGCCGGCATCATTGCCTACATCCTCTTGGGAGGGTACCCTC
CTTTTGCCGACAACCAGGACCAGCTCCGAAAGCGGCACACCTTCTATTTC
CATTCGCCCGAATGGGATGCTGTGTCCCCCGAGGCCAAAGACCTCATTAG
CCGTCTTCTCCACCGAGACCCGCAGCAGAGGCTCTCGGCgcgggaggcct
tggcccatgcctggttcgagaaggagaaagaggagttGGAAGATCGGGAG
CTGCCGGCCgcaaaggaagggatcgAGAAATTCAACGCCTTgcggtgggt
ggggagggagggagggagggagggagggaaggagggagggagggagggag
ggagggagggaaggactaTGCAAGGGCCACGTCTTCAGCCATGCTAGATG
GCTTCTCGATCATTCCCATCGATTTCGTTTCAGCGCATTATGGCTTTTGT
GAAAGCTAGGCCGGGTATTGTAGCGGGCGGAGCTCTACTAGCAGCGTACT
TCCTTGACCCGGACGAAAGAAGTGAAGACGATGTGGATGAGCTACCCTTG
CCAAGCTTCCATAATAAATTATTACAAAATCAGAACCGCTCCAATCGTCA
TATCCTGCCGCCCTCAAACCTAATCCACAGTGTCACAGCTGGCTGTCTTT
CTGCAAAGAAGAGCCTCGACACGCACCCAACTGGAACTGAGGGGACTCTT
GTGACCAATGCGGCCCACTTCGAAAGCCTTTATCAGCTAGGTCCCAAGTT
AGGGACAGGCGCGTTTGCAGTCGTGTATAAATGCACGCCAAAATCCACGT
CGAGCAACGTGGCCGCAGTGAAAGTTTTTGATTTGAGTCGGGTTCCCGCG
AAGAAGCAAGCCAGGATCAGGGCGGACATCCATAAGGAGTACACCATCCT
CCAATCCCTCCAGCACGATCGCATCGTCCAAGTCTACGACCTGTTCGAGG
CCCCCACGCAAAACAAGGTGTACGTGGTGATGGAATTTtgccaaggcggg
gagcTCTTCGAACGCATCGTCGCCAAGACGACCTACAACGAGAAAGAAGC
CCGAGACGTGATCCGGACGCTCCTGACCGCCCTGGCCTTCTGCCACGAGG
ACGCAGGGGTCGTGCACAGGGATTTGAAGCCGGAGAATCTCCTCCTGGAA
AGCGAAACGGACGACCTGCACATCAAAGTGGCGGACTTCGGGGCCGCCTG
TCTGATCACCGAATCCGACTGTCTGTCTCACTACTGCGGCACGCCTTCCT
ACACGGCGCCTGAGATTCTGGCTCGTCAGAAATATGGGCCCAAGGTGGAC
GTGTGGAGCGCCGGCATCATTGCCTACATCCTCTTGGGAGGGTACCCTCC
TTTTGCCGACAACCAGGACCAGCTCCGAAAGCGGCACACCTTCTATTTCC
ATTCGCCCGAATGGGATGCTGTGTCCCCCGAGGCCAAAGACCTCATTAGC
CGTCTTCTCCACCGAGACCCGCAGCAGAGGCTCTCGGCgcgggaggcctt
ggcccatgcctggttcgagaaggagaaagaggagttGGAAGATCGGGAGC
TGCCGGCCgcaaaggaagggatcgAGAAATTCAACGCCTTgcggtgggtg
gggagggagggagggagggagggagggaaggagggagggagggagggagg
gagggagggaaggactaTGCAAGGGCCACGTCTTCAGCCATGCTAGATGG
CTTCTCGATCATTCCCATCGATTTCGTTTCAGCGCATTATGGCTTTTGTG
AAAGCTAGGCCGGGTATTGTAGCGGGCGGAGCTCTACTAGCAGCGTACTT
CCTTGACCCGGACGAAAGAAGTGAAGACGATGTGGATGAGCTACCCTTGC
CAAGCTTCCATAATAAATTATTACAAAATCAGAACCGCTCCAATCGTCAT
ATCCTGCCGCCCTCAAACCTAATCCACAGTGTCACAGCTGGCTGTCTTTC
TGCAAAGAAGAGCCTCGACACGCACCCAACTGGAACTGAGGGGACTCTTG
TGACCAATGCGGCCCACTTCGAAAGCCTTTATCAGCTAGGTCCCAAGTTA
GGGACAGGCGCGTTTGCAGTCGTGTATAAATGCACGCCAAAATCCACGTC
GAGCAACGTGGCCGCAGTGAAAGTTTTTGATTTGAGTCGGGTTCCCGCGA
AGAAGCAAGCCAGGATCAGGGCGGACATCCATAAGGAGTACACCATCCTC
CAATCCCTCCAGCACGATCGCATCGTCCAAGTCTACGACCTGTTCGAGGC
CCCCACGCAAAACAAGGTGTACGTGGTGATGGAATTTtgccaaggcgggg
agcTCTTCGAACGCATCGTCGCCAAGACGACCTACAACGAGAAAGAAGCC
CGAGACGTGATCCGGACGCTCCTGACCGCCCTGGCCTTCTGCCACGAGGA
CGCAGGGGTCGTGCACAGGGATTTGAAGCCGGAGAATCTCCTCCTGGAAA
GCGAAACGGACGACCTGCACATCAAAGTGGCGGACTTCGGGGCCGCCTGT
CTGATCACCGAATCCGACTGTCTGTCTCACTACTGCGGCACGCCTTCCTA
CACGGCGCCTGAGATTCTGGCTCGTCAGAAATATGGGCCCAAGGTGGACG
TGTGGAGCGCCGGCATCATTGCCTACATCCTCTTGGGAGGGTACCCTCCT
TTTGCCGACAACCAGGACCAGCTCCGAAAGCGGCACACCTTCTATTTCCA
TTCGCCCGAATGGGATGCTGTGTCCCCCGAGGCCAAAGACCTCATTAGCC
GTCTTCTCCACCGAGACCCGCAGCAGAGGCTCTCGGCgcgggaggccttg
gcccatgcctggttcgagaaggagaaagaggagttGGAAGATCGGGAGCT
GCCGGCCgcaaaggaagggatcgAGAAATTCAACGCCTTgcggtgggtgg
ggagggagggagggagggagggagggaaggagggagggagggagggaggg
agggagggaaggactaTGCAAGGGCCACGTCTTCAGCCATGCTAG back to top
|