rna5387, rna5387 (mRNA) Nannochloropsis gaditana

Overview
Namerna5387
Unique Namerna5387
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1025
Alignment locationCM002465.1:873668..874446 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100593g2.5930.mrna
Orig protein idgnl|cribi|Naga_100593g2.5930
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:873668..874446 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100593g2gene5208Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5387rna5387-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25300.1cds5374Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5387 ID=rna5387|Name=rna5387|organism=Nannochloropsis gaditana|type=mRNA|length=1025bp
GCAGAAGGCCGGCGTGCCATGGCGGGCATGTGGGCTTTAGACACGATGGC
GCTGCCGTCGGTGAAAGACAACATGGAGGATGCCTCTCGATCGTCCGAAA
ACTTGACGGGAGTTGATCAACATGCGGCTGAATCGTATCCTACGGCTCCA
AAGGCCACCGACCCTGTGGATACGAGGCAAGACTTCACGGAAGAGGCTTT
GGTCAAGCTAGAAGCAGCCGCAAACTCGTTGCCTTTTGCCCACTTTTGTG
ACAAATGTGAGAAAGCAGCCCAAGCTAAGAGTGCACAGAAGAAGCGTTCC
ATTTTTTTCGACAAGGAACTAATATATCGGCTCCAGCGTGCCTCGCCTGG
GCCCGTCTCCATCTTCCCAATTTTGCGTTTTTTGCTTCCCGAGACCGATC
CACGGCAGGGACAGTTCAAGCTGAGGCACCGAACGATGGGAGATGTCATC
GTAAAGACTTTGGGCTTGGCGACGAAATCTAAAGCGGCACTACGGATCAT
GAACTTCTCAATGCCGGAACATAACGGACCCAGGATGGGACCCAATGGTC
GTATTTTGAATACATTGGGGGACTTTGGCAGCACCATTGAGGACGTGCTC
GTTTCCCGCATCCGACAGACTCCCTCTGACTTGTCTCTCCTGGAGGTCAA
CGAATGGCTGGACAAGCTGGTATCAGCCCCGCCGCGTTCCCACGCCAAGC
GGAAGGAGCGTGAAAGAGAAGAAATATTCACCCAGCTTTCCACCCTGTTG
AACCCTCGGGAGATGAAATGGCTGATTCGGATCATTTTGGGCGACCTGAA
GTGTGGGTTCAAGAAAGATTCGGTCCTCAAAGTGTTCGGCCAAGACGGGC
CAGGGCGCCTGCAGAGAAGCTACGACCTGCGAAAAGTCTGCGCAGAGTAT
GCCGTCAAGTAGGGAGGGTGGAGGGAGGGCGGCGAGAGGGAAAGAGGGAC
CACGGGGAGGGCCAAGGATTTTTTGGTGCACCACTTTCTTTCCTGCACGC
ATTTTCCTCGTCCCCGTCCCTTCCC
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protein sequence of rna5387

>rna5387-protein ID=rna5387-protein|Name=rna5387|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
MSQGGRSMPYSGHASLNNAASQKFPLSESHQEEQERDAATRPTELTRMQT
AAREAEEEELRKTGRNEVQQGGTASQVKAGAEYLEKELHDIEQSKAKEVT
EGDD
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mRNA from alignment at CM002465.1:873668..874446-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5387 ID=rna5387|Name=rna5387|organism=Nannochloropsis gaditana|type=mRNA|length=779bp|location=Sequence derived from alignment at CM002465.1:873668..874446- (Nannochloropsis gaditana)
TTTCCCACCCATGGTTGATCCCGGATCACAAGATGGGTGGGAACATTCTC
GGATATCGCCATTGACGTGTCCTTCAGTTTGCTTTGGGTTTTGAGGTGTG
TCCCTTGCTCTACATGACAAATTGAAAACTTCCGAACAAAAACTAGTATG
CTGCTTTGGAAGAAAGGAAAGTTGAGATTGGCGGCCTTCTCGTTTTCTAA
TGGCATTTTACCGATGAAAGTCCAATACTAAGCACAGTCTAAAGACTTTA
TGTCTCAAGGGGGGCGTTCCATGCCGTATTCCGGCCACGCTAGCCTGAAT
AATGCGGCCTCTCAAAAATTCCCTTTAAGTGAGAGTCATCAAGAGGAACA
GGAACGGGACGCAGCCACACGTCCTACGGAACTGACGCGGATGCAAACGG
CAGCCAGAGAAGCTGAAGAGGAAGAATTGAGAAAAACAGGTAGAAATGAA
GTACAGCAAGGAGGCACGGCATCACAAGTCAAAGCAGGGGCTGAGTACCT
TGAAAAAGAGGTGAGTTTTTAATGAGAGACATCTTTCCCGTGACTTTGCT
AGATCATAGAGCTTCGAATGCAAAGATCGACAGATATTTCTGGTATTTTT
ATCATTTTACATATCATGTGCAGCTCCACGATATAGAGCAATCAAAAGCG
AAAGAGGTAACTGAAGGAGATGACTGAGAAAGAGGGATGTTTATGAAGGC
AGCAAAGGTCCAGAAAGAAAGACTAGTTAAAATCCCTGAAATGAATGCGA
CATTTTGCGAAGAAGCATTGCTATTACGA
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Coding sequence (CDS) from alignment at CM002465.1:873668..874446-

>rna5387 ID=rna5387|Name=rna5387|organism=Nannochloropsis gaditana|type=CDS|length=630bp|location=Sequence derived from alignment at CM002465.1:873668..874446- (Nannochloropsis gaditana)
CTCCACGATATAGAGCAATCAAAAGCGAAAGAGGTAACTGAAGGAGATGA
CTGAATGTCTCAAGGGGGGCGTTCCATGCCGTATTCCGGCCACGCTAGCC
TGAATAATGCGGCCTCTCAAAAATTCCCTTTAAGTGAGAGTCATCAAGAG
GAACAGGAACGGGACGCAGCCACACGTCCTACGGAACTGACGCGGATGCA
AACGGCAGCCAGAGAAGCTGAAGAGGAAGAATTGAGAAAAACAGGTAGAA
ATGAAGTACAGCAAGGAGGCACGGCATCACAAGTCAAAGCAGGGGCTGAG
TACCTTGAAAAAGAGCTCCACGATATAGAGCAATCAAAAGCGAAAGAGGT
AACTGAAGGAGATGACTGAATGTCTCAAGGGGGGCGTTCCATGCCGTATT
CCGGCCACGCTAGCCTGAATAATGCGGCCTCTCAAAAATTCCCTTTAAGT
GAGAGTCATCAAGAGGAACAGGAACGGGACGCAGCCACACGTCCTACGGA
ACTGACGCGGATGCAAACGGCAGCCAGAGAAGCTGAAGAGGAAGAATTGA
GAAAAACAGGTAGAAATGAAGTACAGCAAGGAGGCACGGCATCACAAGTC
AAAGCAGGGGCTGAGTACCTTGAAAAAGAG
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Synonyms
Publications