rna5382, rna5382 (mRNA) Nannochloropsis gaditana

Overview
Namerna5382
Unique Namerna5382
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2058
Alignment locationCM002465.1:855866..856242 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100135g3.5862.mrna
Orig protein idgnl|cribi|Naga_100135g3.5862
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:855866..856242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100135g3gene5203Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5382rna5382-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25305.1cds5369Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5382 ID=rna5382|Name=rna5382|organism=Nannochloropsis gaditana|type=mRNA|length=2058bp
ATGCCTCCATGCGCATTCCTCACTCATCGCATCAAACTGCACAGCTTTCC
TTCGACGATGATGGGAATCCTTTTAAAGGGGTTGTTGGCGACCGTGATGC
TTTGCCGGTGGAACGGCATTGCGTTTACAATTGCCTCTGGCCGCTTGGGA
GGTTCTCCAAAGCGTCCTTGGGGTCACTGCGTAAACACAAGAGCCAGCAT
TATATCGACAGTCAACCCAGAAATAAATCAATGGCACTGGTTCCATACAG
TTCGTGGGGGAGCTTTTCCTGTTGCTTCATCTTCGTCGCCCTCGCCGCCT
GCTCCCCCTGGACAAAGCATGTTTAAGACGTTGAGAACAACGCCAGTGGA
AGGAATGAAGCCAGGCACCTCCGGTCTTCGCAAGAAAGTAAAAGTCGTTC
GAGATGGACTGTACCTCCATAATTTTGTTCAAGCGCTTTTCGACTCGCTG
CCACCGCACGAAAAGGAAGGGGCAACGATGGTGGTGTCTGGAGATGGACG
CCATTACAATCGGGAGGCGATCCAAATCATCATTGAAATTGCGGCCGCAA
ATGGCGTAGGACGTCTATGGATCGGTAAAGGAGGAATCATGTCTACGCCT
GCTGTCTCTGCTGTCATTCGTGAGCGAGAAGGCGGCACTGCCATGGGGGG
CATTATCTTGACAGCCAGCCATAATCCCGGTGGCCCGGAGGAGGACTTCG
GGATCAAGTACAACATGCAAAACGGGGAGCCGGCCTTGGAGTCATTTACG
GATGCAGTCTATGCCGCTACGTTGAGCATCGAGGAAATTAAGATCCTGGC
CAATGCCCCCAAAGTAGATTTGGATGTCTTGGGTGTGACGCGAGTCGGAG
AGATGGTGGTGGAGGTGATCGATCCGGTCCAGGATTATCTAGGCGTGTTA
AAGGACGCGTTTGATTTTGAGGCACTTAGAAAATTCATTGCTCGCCCGGG
TGGCTTCAAGCTTGTCTTCGACGCAATGCACGGCGTTGCGGCTCCGTACG
CCCAGGTCGTGTTGGGCAAGGAGCTGGGATGCCCTCCCTCGACTTTCCTG
CATGCGTCAAGCAAAGAGGATTTCGGAGGCTTGCACCCCGATCCGAACTT
GGCCTATGCCTCAGACCTGGTAAAAGTGATGGGCTTGTTGCCCAGTGGTG
CCCCCGATCCATCGATGGTGGAGGACAAGGACGTGCCAGACCTAGGGGCC
GCTGCCGACGGGGACGCGGACAGGAACATGATCCTTGGAAAGCGTTTCTT
CGTCACCCCTTCCGACTCCCTAGCCCTGATCGCTGCGAACGCGGATGCGA
TCCCTTTCTTCCGGGAGCAAGGCGGTTTGAGGACTGTGGCGCGGTCCATG
CCTACCAGTCAGGCAGTGGACCAAGTGGCGCGGGCGAAGGGCTTGACCTG
CGTCGAAACGCCGACGGGGTGGAAGTACTTTGGAAATTTAATGGACGCGC
GGGCCTTGGGCAGTGCCCAAGATTACGTCCCCATCTTGTGCGGGGAGGAG
AGCTTCGGGACGGGCAGCAACCATGTGCGTGAAAAGGACGGGATGTGGGC
TGTGCTGGCATGGTTGTCTATCTTGGCTTCCCACAATCCTAACCCGGAGG
CGCCGTTGAAGCCGATCAGCGCGATCGTTCAGGAGCATTGGGCAATCTAT
GGCAGGAACTATTACTGCCGGTACGACTACGAAACGGTCGACTCGGACGC
GGCAAACGCCATGATGGCCCATCTACGGGAGCCTGATTTCAAGCCGGGGC
CGGTCCTCGACGGCTTTGTCCTGGCAGAGGTGGACGATTTCTCCTACAGT
GATCCTGTGGACGGTCGTCAGGCTGTCAAGCAAGGTGTCCGCTTACTGTT
CGAAGATGGGAGCCGGGCAGTCTTCCGTCTTTCAGGCACCGGGTCGTCGG
GAGCAACCATTCGGATGTACCTAGAAAGGTACGAAGCGGATGTGAGCAAA
CAAGGGATGACAAGTTCAGAGGCTTTGAAGCCACTAGCGGACTTTGCGAT
CAAACTAGCAAAGCTGGAGCATTACACAGGGCGGAGGGCGCCAACCGTGA
TTACTTGA
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protein sequence of rna5382

>rna5382-protein ID=rna5382-protein|Name=rna5382|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
MVATLHFFLRSGKTSVSRCPNYSSRCRKRKRRCNDRGLAVSIHVYRRKEH
MGAPSSYVHMSTAWDSRRKREMTNPYIFVLDYLNRTDGALSMKASMLFVV
CRPK
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mRNA from alignment at CM002465.1:855866..856242-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5382 ID=rna5382|Name=rna5382|organism=Nannochloropsis gaditana|type=mRNA|length=377bp|location=Sequence derived from alignment at CM002465.1:855866..856242- (Nannochloropsis gaditana)
ATGGTGGCCACTCTCCATTTTTTTTTGCGGTCGGGTAAAACGAGCGTGAG
CAGATGCCCCAATTATTCAAGTCGTTGCCGGAAACGAAAGCGGAGATGTA
ACGATCGTGGATTGGCCGTTTCTATGTGAGTGGCATGTGTGTGTGTTTCT
GTGTCCACGCTTTGTCACTATGGGGATAGTATTAAAGCCATGTGTATCGT
CGGAAAGAACATATGGGGGCTCCTTCTAGCTACGTACACATGTCTACAGC
ATGGGACAGCCGGAGGAAACGAGAAATGACAAACCCTTATATATTTGTAT
TGGACTATTTAAATAGGACTGATGGGGCATTATCGATGAAAGCTTCTATG
TTATTTGTGGTTTGTCGCCCTAAATGA
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Coding sequence (CDS) from alignment at CM002465.1:855866..856242-

>rna5382 ID=rna5382|Name=rna5382|organism=Nannochloropsis gaditana|type=CDS|length=630bp|location=Sequence derived from alignment at CM002465.1:855866..856242- (Nannochloropsis gaditana)
CCATGTGTATCGTCGGAAAGAACATATGGGGGCTCCTTCTAGCTACGTAC
ACATGTCTACAGCATGGGACAGCCGGAGGAAACGAGAAATGACAAACCCT
TATATATTTGTATTGGACTATTTAAATAGGACTGATGGGGCATTATCGAT
GAAAGCTTCTATGTTATTTGTGGTTTGTCGCCCTAAATGAATGGTGGCCA
CTCTCCATTTTTTTTTGCGGTCGGGTAAAACGAGCGTGAGCAGATGCCCC
AATTATTCAAGTCGTTGCCGGAAACGAAAGCGGAGATGTAACGATCGTGG
ATTGGCCGTTTCTATCCATGTGTATCGTCGGAAAGAACATATGGGGGCTC
CTTCTAGCTACGTACACATGTCTACAGCATGGGACAGCCGGAGGAAACGA
GAAATGACAAACCCTTATATATTTGTATTGGACTATTTAAATAGGACTGA
TGGGGCATTATCGATGAAAGCTTCTATGTTATTTGTGGTTTGTCGCCCTA
AATGAATGGTGGCCACTCTCCATTTTTTTTTGCGGTCGGGTAAAACGAGC
GTGAGCAGATGCCCCAATTATTCAAGTCGTTGCCGGAAACGAAAGCGGAG
ATGTAACGATCGTGGATTGGCCGTTTCTAT
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Synonyms
Publications