rna5381, rna5381 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5381
Unique Name	rna5381
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	981
Alignment location	CM002465.1:853369..855598 +

Link to JBrowse

Properties


Property Name	Value
Product	phosphoglucomutase
Orig transcript id	gnl\|cribi\|Naga_100135g4.5872.mrna
Orig protein id	gnl\|cribi\|Naga_100135g4.5872
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:853369..855598 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100135g4	gene5202	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5381	rna5381-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25315.1	cds5368	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:853369..855598+
coding sequence from alignment at CM002465.1:853369..855598+

mRNA sequence

>rna5381 ID=rna5381|Name=rna5381|organism=Nannochloropsis gaditana|type=mRNA|length=981bp
ATGGGTGTAAACTGGAATGGAAAAAACAACCGTTGGATCGCTGAGGTGCG
GCACAAAAAGCAGCGACTGTTGCACAGGGCATTCTCTGATGAAGAAGAGG
CGGCGCATGCAATCGACCGGGTCTTACGACAGCACTTCGGAGAGACGATT
CTGACCAATTTTCATCATCCCTCCGGCGTGTTCTTAGATCCGAAGCATGC
ATTTGTCACAAAGGTGTCAACAGGAAGCAGTTCATCTTGCAGCGACAACA
CTTTTACTTCCACGGCGACATGGGCCGTCACGTACGTCGAAGGGCTCCGT
CTCTACAAGGCGGTGATCAAACTGCGTGGGCGGCCACATCTCATTGGTCT
ATTCTCCTCCAGAGATCAAGCGATTGCAGTTATTAAGAAGAAGACACAGC
CGAGGGAGAAGGGGGGCATGTCCAAGTCTCCTAAACAGTCTCGTTTCTTG
GGGGTCTCCTGGGATTGTCACCACAAGAAATGGACCGCACGTCTATACCA
TGATGGGACGCGCGTTTTGTCTCAAACATTCAAGGAAGATCAGGAAGAGG
AGGCTGCCCTCGTGTATGATATGTACGCGCGCAGGTACCACGGTGACGGC
GCCTTTGTCAATTTCGACATGAACGGAAACTTCTTGGACCCCAAAAATCG
ATCGACCCGGATAGATGCCAGCGCCGGCGTAGACAAAGACAGTCAAAACA
TGGATTTTAGAGGTGTCTCGTGGTCCAAGGAGACCAATAAATGGTACGCG
CAGATTCGCGTGGCAGGACGTACGTTCAACCTAGGATATTTCTCAGACGT
CAAAGCCGCTGCCTTGCAGTACGACATGGCGGCGCGCAAATATCATGGGA
CATACGCGCGTTGCAATTTTGATTTACAAGGAAATCGAACGCAGGTTCGA
ATGAAGCTCAACAACTCGGCAGCTGCCAAGGTCAAATATACTGTGCGTGA
GAACTCGGACAAAGAAGACGAGAACAGTTGA

protein sequence of rna5381

>rna5381-protein ID=rna5381-protein|Name=rna5381|organism=Nannochloropsis gaditana|type=polypeptide|length=685bp
MPPCAFLTHRIKLHSFPSTMMGILLKGLLATVMLCRWNGIAFTIASGRLG
GSPKRPWGHCVNTRASIISTVNPEINQWHWFHTVRGGAFPVASSSSPSPP
APPGQSMFKTLRTTPVEGMKPGTSGLRKKVKVVRDGLYLHNFVQALFDSL
PPHEKEGATMVVSGDGRHYNREAIQIIIEIAAANGVGRLWIGKGGIMSTP
AVSAVIREREGGTAMGGIILTASHNPGGPEEDFGIKYNMQNGEPALESFT
DAVYAATLSIEEIKILANAPKVDLDVLGVTRVGEMVVEVIDPVQDYLGVL
KDAFDFEALRKFIARPGGFKLVFDAMHGVAAPYAQVVLGKELGCPPSTFL
HASSKEDFGGLHPDPNLAYASDLVKVMGLLPSGAPDPSMVEDKDVPDLGA
AADGDADRNMILGKRFFVTPSDSLALIAANADAIPFFREQGGLRTVARSM
PTSQAVDQVARAKGLTCVETPTGWKYFGNLMDARALGSAQDYVPILCGEE
SFGTGSNHVREKDGMWAVLAWLSILASHNPNPEAPLKPISAIVQEHWAIY
GRNYYCRYDYETVDSDAANAMMAHLREPDFKPGPVLDGFVLAEVDDFSYS
DPVDGRQAVKQGVRLLFEDGSRAVFRLSGTGSSGATIRMYLERYEADVSK
QGMTSSEALKPLADFAIKLAKLEHYTGRRAPTVIT

mRNA from alignment at CM002465.1:853369..855598+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5381 ID=rna5381|Name=rna5381|organism=Nannochloropsis gaditana|type=mRNA|length=2230bp|location=Sequence derived from alignment at CM002465.1:853369..855598+ (Nannochloropsis gaditana)
ATGCCTCCATGCGCATTCCTCACTCATCGCATCAAACTGCACAGCTTTCC
TTCGACGATGATGGGAATCCTTTTAAAGGGGTTGTTGGCGACCGTGATGC
TTTGCCGGTGGAACGGCATTGCGTTTACAATTGCCTCTGGCCGCTTGGGA
GGTTCTCCAAAGCGTCCTTGGGGTCACTGCGTAAACACAAGAGCCAGCAT
TATATCGACAGTCAACCCAGAAATAAATCAATGGCACTGGTTCCATACAG
TTCGTGGGGGAGCTTTTCCTGTTGCTTCATCTTCGTCGCCCTcgccgcct
gctccccctgGACAAAGCATGTTTAAGACGTTGAGAACAACGCCAGTGGA
AGGAATGAAGCCAGGCACCTCCGGTCTTCGCAAGAAAGTAAAAGTCGTTC
GAGATGGACTGTACCTCCATAATTTTGTTCAAGCGCTTTTCGACTCGCTG
CCACCGcacgaaaaggaaggggcaacGATGGTGGTGTCTGGAGATGGACG
CCATTACAATCGGGAGGCGATCCAAATCATCATTGAAATTGCGGCCGCAA
ATGGCGTAGGACGTCTATGGATCGGTAAAGGAGGAATCATGTCTACGCCT
GCTGTCTCTGCTGTCATTCGTGAGCGAGAAGGCGGCACTGCCATGGGGGG
CATTATCTTGACAGCCAGCCATAATCCCGGTGgcccggaggaggacttcG
GGATCAAGTACAACATGCAAAACGGGGAGCCGGCCTTGGAGTCATTTACG
GATGCAGTCTATGCCGCTACGTTGAGCATCGAGGAAATTAAGATCCTGGC
CAATGCCCCCAAAGTAGATTTGGATGTCTTGGGTGTGACGCGAGTCGGag
agatggtggtggaggtgatcGATCCGGTCCAGGATTATCTAGGCGTGTTA
AAGGACGCGTTTGATTTTGAGGCACTTAGAAAATTCATTGCTCGCCCGGG
TGGCTTCAAGCTTGTCTTCGACGCAATGCACGGCGTTGCGGCTCCGTACG
CCCAGGTCGTGTTGGGCAAGGAGCTgggatgccctccctcgacttTCCTG
CATGCGTCAAGCAAAGAGGATTTCGGAGGCTTGCACCCCGATCCGAACTT
GGCCTATGCCTCAGACCTGGTAAAAGTGATGGGCTTGTTGCCCAGTGGTG
CCCCCGATCCATcgatggtggaggacaaggacgtgcCAGACCTAGGGGCC
GCTGCCGACGGGGACGCGGACAGGAACATGATCCTTGGAAAGCGTTTCTT
CGTCACCCCTTCCGACTCCCTAGCCCTGATCGCTGCGAACGCGGATGCGa
tccctttcttccgggAGCAAGGCGGTTTGAGGACTGTGGCGCGGTCCATG
CCTACCAGTCAGGCAGTGGACCAAGTGGCGCGGGCGAAGGGCTTGACCTG
CGTCGAAACGCCGACGGGGTGGAAGTACTTTGGAAATTTAATGGACGCGC
GGGCCTTGGGCAGTGCCCAAGATTACGTCCCCATCTtgtgcggggaggag
agcttcGGGACGGGCAGCAACCATGTGCGTGAAAAGGACGGGATGTGGGC
TGTGCTGGCATGGTTGTCTATCTTGGCTTCCCACAATCCTAACCCGGAGG
CGCCGTTGAAGCCGATCAGCGCGATCGTTCAGGAGCATTGGGCAATCTAT
GGCAGGTAGGGTCAAAGGAATGAGGGATAAGGACCGAGCGGGGTGGTTCG
GGTCCCACACGATGCGTTGTATGTAGCTTCCTTGATTTCAAATATTTTTC
TGAGATCACTCTTATGTCCCCTTGGGCACGAGTGCTTGTATCGACCTTCA
TTTCGATAATATACCTTTGATGCATAGGAACTATTACTGCCGGTACGACT
ACGAAACGGTCGACTCGGACGCGGCAAACGCCATGATGGCCCATCTACGG
GAGCCTGATTTCAAGCCGGGGCCGGTCCTCGACGGCTTTGTCCTGGCAGA
GGTGGACGATTTCTCCTACAGTGATCCTGTGGACGGTCGTCAGGCTGTCA
AGCAAGGTGTCCGCTTACTGTTCGAAGATGGGAGCCGGGCAGTCTTCCGT
CTTTCAGGCACCGGGTCGTCGGGAGCAACCATTCGGATGTACCTAGAAAG
GTACGAAGCGGATGTGAGCAAACAAGGGATGACAAGTTCAGAGGCTTTGA
AGCCACTAGCGGACTTTGCGATCAAACTAGCAAAGCTGGAGCATTACaca
gggcggagggcgccAACCGTGATTACTTGA

Coding sequence (CDS) from alignment at CM002465.1:853369..855598+

>rna5381 ID=rna5381|Name=rna5381|organism=Nannochloropsis gaditana|type=CDS|length=4116bp|location=Sequence derived from alignment at CM002465.1:853369..855598+ (Nannochloropsis gaditana)
ATGCCTCCATGCGCATTCCTCACTCATCGCATCAAACTGCACAGCTTTCC
TTCGACGATGATGGGAATCCTTTTAAAGGGGTTGTTGGCGACCGTGATGC
TTTGCCGGTGGAACGGCATTGCGTTTACAATTGCCTCTGGCCGCTTGGGA
GGTTCTCCAAAGCGTCCTTGGGGTCACTGCGTAAACACAAGAGCCAGCAT
TATATCGACAGTCAACCCAGAAATAAATCAATGGCACTGGTTCCATACAG
TTCGTGGGGGAGCTTTTCCTGTTGCTTCATCTTCGTCGCCCTcgccgcct
gctccccctgGACAAAGCATGTTTAAGACGTTGAGAACAACGCCAGTGGA
AGGAATGAAGCCAGGCACCTCCGGTCTTCGCAAGAAAGTAAAAGTCGTTC
GAGATGGACTGTACCTCCATAATTTTGTTCAAGCGCTTTTCGACTCGCTG
CCACCGcacgaaaaggaaggggcaacGATGGTGGTGTCTGGAGATGGACG
CCATTACAATCGGGAGGCGATCCAAATCATCATTGAAATTGCGGCCGCAA
ATGGCGTAGGACGTCTATGGATCGGTAAAGGAGGAATCATGTCTACGCCT
GCTGTCTCTGCTGTCATTCGTGAGCGAGAAGGCGGCACTGCCATGGGGGG
CATTATCTTGACAGCCAGCCATAATCCCGGTGgcccggaggaggacttcG
GGATCAAGTACAACATGCAAAACGGGGAGCCGGCCTTGGAGTCATTTACG
GATGCAGTCTATGCCGCTACGTTGAGCATCGAGGAAATTAAGATCCTGGC
CAATGCCCCCAAAGTAGATTTGGATGTCTTGGGTGTGACGCGAGTCGGag
agatggtggtggaggtgatcGATCCGGTCCAGGATTATCTAGGCGTGTTA
AAGGACGCGTTTGATTTTGAGGCACTTAGAAAATTCATTGCTCGCCCGGG
TGGCTTCAAGCTTGTCTTCGACGCAATGCACGGCGTTGCGGCTCCGTACG
CCCAGGTCGTGTTGGGCAAGGAGCTgggatgccctccctcgacttTCCTG
CATGCGTCAAGCAAAGAGGATTTCGGAGGCTTGCACCCCGATCCGAACTT
GGCCTATGCCTCAGACCTGGTAAAAGTGATGGGCTTGTTGCCCAGTGGTG
CCCCCGATCCATcgatggtggaggacaaggacgtgcCAGACCTAGGGGCC
GCTGCCGACGGGGACGCGGACAGGAACATGATCCTTGGAAAGCGTTTCTT
CGTCACCCCTTCCGACTCCCTAGCCCTGATCGCTGCGAACGCGGATGCGa
tccctttcttccgggAGCAAGGCGGTTTGAGGACTGTGGCGCGGTCCATG
CCTACCAGTCAGGCAGTGGACCAAGTGGCGCGGGCGAAGGGCTTGACCTG
CGTCGAAACGCCGACGGGGTGGAAGTACTTTGGAAATTTAATGGACGCGC
GGGCCTTGGGCAGTGCCCAAGATTACGTCCCCATCTtgtgcggggaggag
agcttcGGGACGGGCAGCAACCATGTGCGTGAAAAGGACGGGATGTGGGC
TGTGCTGGCATGGTTGTCTATCTTGGCTTCCCACAATCCTAACCCGGAGG
CGCCGTTGAAGCCGATCAGCGCGATCGTTCAGGAGCATTGGGCAATCTAT
GGCAGGAACTATTACTGCCGGTACGACTACGAAACGGTCGACTCGGACGC
GGCAAACGCCATGATGGCCCATCTACGGGAGCCTGATTTCAAGCCGGGGC
CGGTCCTCGACGGCTTTGTCCTGGCAGAGGTGGACGATTTCTCCTACAGT
GATCCTGTGGACGGTCGTCAGGCTGTCAAGCAAGGTGTCCGCTTACTGTT
CGAAGATGGGAGCCGGGCAGTCTTCCGTCTTTCAGGCACCGGGTCGTCGG
GAGCAACCATTCGGATGTACCTAGAAAGGTACGAAGCGGATGTGAGCAAA
CAAGGGATGACAAGTTCAGAGGCTTTGAAGCCACTAGCGGACTTTGCGAT
CAAACTAGCAAAGCTGGAGCATTACacagggcggagggcgccAACCGTGA
TTACTTGAATGCCTCCATGCGCATTCCTCACTCATCGCATCAAACTGCAC
AGCTTTCCTTCGACGATGATGGGAATCCTTTTAAAGGGGTTGTTGGCGAC
CGTGATGCTTTGCCGGTGGAACGGCATTGCGTTTACAATTGCCTCTGGCC
GCTTGGGAGGTTCTCCAAAGCGTCCTTGGGGTCACTGCGTAAACACAAGA
GCCAGCATTATATCGACAGTCAACCCAGAAATAAATCAATGGCACTGGTT
CCATACAGTTCGTGGGGGAGCTTTTCCTGTTGCTTCATCTTCGTCGCCCT
cgccgcctgctccccctgGACAAAGCATGTTTAAGACGTTGAGAACAACG
CCAGTGGAAGGAATGAAGCCAGGCACCTCCGGTCTTCGCAAGAAAGTAAA
AGTCGTTCGAGATGGACTGTACCTCCATAATTTTGTTCAAGCGCTTTTCG
ACTCGCTGCCACCGcacgaaaaggaaggggcaacGATGGTGGTGTCTGGA
GATGGACGCCATTACAATCGGGAGGCGATCCAAATCATCATTGAAATTGC
GGCCGCAAATGGCGTAGGACGTCTATGGATCGGTAAAGGAGGAATCATGT
CTACGCCTGCTGTCTCTGCTGTCATTCGTGAGCGAGAAGGCGGCACTGCC
ATGGGGGGCATTATCTTGACAGCCAGCCATAATCCCGGTGgcccggagga
ggacttcGGGATCAAGTACAACATGCAAAACGGGGAGCCGGCCTTGGAGT
CATTTACGGATGCAGTCTATGCCGCTACGTTGAGCATCGAGGAAATTAAG
ATCCTGGCCAATGCCCCCAAAGTAGATTTGGATGTCTTGGGTGTGACGCG
AGTCGGagagatggtggtggaggtgatcGATCCGGTCCAGGATTATCTAG
GCGTGTTAAAGGACGCGTTTGATTTTGAGGCACTTAGAAAATTCATTGCT
CGCCCGGGTGGCTTCAAGCTTGTCTTCGACGCAATGCACGGCGTTGCGGC
TCCGTACGCCCAGGTCGTGTTGGGCAAGGAGCTgggatgccctccctcga
cttTCCTGCATGCGTCAAGCAAAGAGGATTTCGGAGGCTTGCACCCCGAT
CCGAACTTGGCCTATGCCTCAGACCTGGTAAAAGTGATGGGCTTGTTGCC
CAGTGGTGCCCCCGATCCATcgatggtggaggacaaggacgtgcCAGACC
TAGGGGCCGCTGCCGACGGGGACGCGGACAGGAACATGATCCTTGGAAAG
CGTTTCTTCGTCACCCCTTCCGACTCCCTAGCCCTGATCGCTGCGAACGC
GGATGCGatccctttcttccgggAGCAAGGCGGTTTGAGGACTGTGGCGC
GGTCCATGCCTACCAGTCAGGCAGTGGACCAAGTGGCGCGGGCGAAGGGC
TTGACCTGCGTCGAAACGCCGACGGGGTGGAAGTACTTTGGAAATTTAAT
GGACGCGCGGGCCTTGGGCAGTGCCCAAGATTACGTCCCCATCTtgtgcg
gggaggagagcttcGGGACGGGCAGCAACCATGTGCGTGAAAAGGACGGG
ATGTGGGCTGTGCTGGCATGGTTGTCTATCTTGGCTTCCCACAATCCTAA
CCCGGAGGCGCCGTTGAAGCCGATCAGCGCGATCGTTCAGGAGCATTGGG
CAATCTATGGCAGGAACTATTACTGCCGGTACGACTACGAAACGGTCGAC
TCGGACGCGGCAAACGCCATGATGGCCCATCTACGGGAGCCTGATTTCAA
GCCGGGGCCGGTCCTCGACGGCTTTGTCCTGGCAGAGGTGGACGATTTCT
CCTACAGTGATCCTGTGGACGGTCGTCAGGCTGTCAAGCAAGGTGTCCGC
TTACTGTTCGAAGATGGGAGCCGGGCAGTCTTCCGTCTTTCAGGCACCGG
GTCGTCGGGAGCAACCATTCGGATGTACCTAGAAAGGTACGAAGCGGATG
TGAGCAAACAAGGGATGACAAGTTCAGAGGCTTTGAAGCCACTAGCGGAC
TTTGCGATCAAACTAGCAAAGCTGGAGCATTACacagggcggagggcgcc
AACCGTGATTACTTGA

Synonyms

Publications