rna5378, rna5378 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5378
Unique Name	rna5378
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2569
Alignment location	CM002465.1:844238..847144 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100135g7.5870.mrna
Orig protein id	gnl\|cribi\|Naga_100135g7.5870
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:844238..847144 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100135g7	gene5199	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25313.1	cds5365	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5378	rna5378-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:844238..847144-
coding sequence from alignment at CM002465.1:844238..847144-

mRNA sequence

>rna5378 ID=rna5378|Name=rna5378|organism=Nannochloropsis gaditana|type=mRNA|length=2569bp
CTATACATCCTTTGTAACTATTTAACATTTCAACCAGGTCTTCGAAAGTT
GAGGGCTATCGTCAGCCATCCAATTCGCCCTTTCCCTACTCCTACCCTGC
TTAAGTAACTGTTCTTCCCACTCCATTCTTGGCAAAATACGGGACAACCC
CCCACCGTAAAATTGCCAACCCTTACATTTCAAGACCTGTCACACGTTAC
TTATCATGCTAAGCCTTCAACACGCACGCTGCCTTCTTCTTTTACGCAGT
CAATCTCGAGCATCACCATGGGGTTGGCGCACTGCCACCGCTTTCCTCTC
TACGACCTCCCCAGCTACTGCCTCCCCTACTTCCCAACCCTCACATGCCG
ATCTTACCCTCAAAGAAATAGTTGCCCAGATTCCAGACGGTCTTGGCAGC
ATACCTCAATCCCGTGTTCGTAATTTTTCTGTCATCGCCCACATTGACCA
TGGGAAAAGTACTCTTTCCGACTGTTTGCTTGAACTCACGGGTAACATCA
CGTCGGCCGAGAAAAAGGCCAAGGCCCAGTACACTGATACGCTGAAAGTG
GAGCGAGAACGTGGCATTACTGTCAAAGCTCAAACAGCCTCAATGGTATA
CCGACATCCCAAAGACGGCAAGGAATATCTTCTAAACCTTGTGGATACCC
CCGGACATGTGGATTTTGCCTACGAAGTCTCCCGGTCCCTCTCTGCCTGT
CAAGGCGCATTGCTCCTCGTCGACGCCACGCAGGGGATACAAGCACAAAC
TCTTTCTACCTATGCCTTTGCCCAAGAAGCGAAACTCTCCATCATCCCCG
TCGTCACCAAGTCCGATTTACCGCACGCTCAGACCGATGACGTCACGCTT
CAAATGGCTACGACCTTCGACATGGACTTGGAGGACGTGCTGGTCACGTC
TGCAAAAACTGGTCAGGGCGTGCACGCTATCCTTCCCGCGGTGATTGACA
GGATCTCTGCCCCCGGGGGTGATCCCACCGCCCCTCTACGTGCGCGACTC
ATCGATTCCTGGTACGACCCCACACGCGGGGTGGTCTGTCTCGTCCAAGT
CGTGGACGGATCGATCAAGGAGAACGACCGGATCTCCGCCCATTCCTTGG
CCGCCTTCGAATCTTTCTCGGTGCAGGAGGTGGGGGTGTTGTGCCCCTAC
CAGCTTCGGACAGGTTCCCTCTTGACGGGCCAGGTCGGCTACGTGATCGC
TGGGATGCGGTCCACGCGGCAGGCGAAGATGGGAGACACCATCTACCACC
ACCAAAAGGGAGCCGCGGAGGCCGCCGAAGCCGGAGTGGACCCATTGCCC
GGCTTTGAGACCGCCAAATCGATGCTCTTCGCCAGTATTTACCCCCTGGA
CACCCAGGATTTTGACTCTCTGGAGCTGGCAGTCAACAAGTTGACCTTGA
ACGACGCCTCGGTGACGGTGCAGCGGGAAGGGAGCAATACCTCGCTGGGC
TCTGGGCTGCGATGTGGATTCCTGGGGCTGCTGCACATGGAAGTGTTCAA
CCAGAGACTACGGGACGAGTTTGGGACCGCAGTCCTTCTGACCTCGCCCA
CGGTGCCTTACCGAATCATCCACAGCCAAAAAGAGGGAGAAACAGCAGAG
GTGAAGGTCATTCAGACGTTGGCCGATTGGCCTGACCCAGCGACGACGCC
GAATTATCGAGATTTGAAAATCGAGGAGCCGGTGGTGGAGGCGACCATCC
TGACGCCGGTGACGAGCGTGGGAGCCATCACCACTTGCTTGAAAGAGAGG
CGCGGGGTGCAAGAAGACGTCAAGTACCTGGACGACAAGAACGTGGTGCT
CACTTACCGGTTGCCCTGGCAGGAGGTCGTGACCGATCTCCACGATGTGG
TGAAGAATGTGAGTGCGGGTTATGCGTCGTTGAATTACAAGGAAGCGGGC
TACGCGTCGGACGATCTCGTCAAGGTCGAGTTGGCCTTGAATGGAGAGGA
GGTGGACGCTCTTTCCTTCGTCTGCCACCGGACCAAAGCCGAGCGGGAAG
GGAGGAGGGTGGCTTTGAAACTGAAGAATGTCATTGACCGACAAAATTTC
GAGATCAACATTCAGGCAAAGGTGGGAAGGAAGGTGGTTGCCCGGGAGCG
GGTGGCGCCGTATAGAAAGGATGTGCTGGTCACCAAGGCGGGGAAAAATG
TTGGTGGTGGGGACGTGACACGAAAAAAGAAGCTTCTTGAGAAGCAAAAG
CAAGGAAAGAAACGTGCAAAAATGGTGGGAAAGGTGTCGTTGAGTCAAGA
AGCTTTTTGGGCGGTGATCTCCAAGGATTGAGAGTGAAAAGTAATGGATC
CATAGAAGGAGCGACCACGATATGGCGATATCATACGCGGGACTGTAACG
ATAGGAATAACTGTAGACGGCTACGTAGGTCCATCACCTAGAGCGTCAAC
CAGCGACAGAATAGTCCTTGGCACCACGAAAACCGGGTGGCTCCATCTTG
GCTTCACGCGGTTCACATGGAAATAGTAGAAAATTGCAAATGTTCAGCGA
GTAAGATGCAGAAGCACACCTTTGGTGGTGCAAAAGTAACAAGGTAAAAG
CAAGCCTATGGGTTTTATC

protein sequence of rna5378

>rna5378-protein ID=rna5378-protein|Name=rna5378|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MQHRLERGLRVVTRDGGRDKCSYLYDHERLVPKVELNPVVIGSATSVVND
DAVLQENLGLPSAARSGWTRAARYPGLGEPAMEGSGCGRHFLAAHQFRPL
SRVVSGKERGTRWERLEKRGARKGGERHRGQGDRAAAECACSRDGGGVNE
ILHVVALHRVQLYSRQ

mRNA from alignment at CM002465.1:844238..847144-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5378 ID=rna5378|Name=rna5378|organism=Nannochloropsis gaditana|type=mRNA|length=2907bp|location=Sequence derived from alignment at CM002465.1:844238..847144- (Nannochloropsis gaditana)
TAGCCAATGGAAAGGACGCAATAAATTTGCTTTGCAGCGAAAGTTATCAC
TAATTACACAATAAGATAATGCCGACGCATTGTAGGATTTTAAAGGACGT
TTGGACCGCTGTACGTGGTGCACATATATATTTCGGTGGTCTCTCCCATG
ACAAAGTGATCGCTTTATCCTCCACCCCTGCGTCAAAGCAATTTGGGTCA
TGCCCCTCCTCTCACAACCTTTATACAGCGCCACTACCCACAACTATCCA
GGTACATCATTGAAACATCCAGTCGGACTGCCTGGGGGAGAGGCGCGGCG
GTTGTGCGAGGCGCAAGCAGGCCCTGTCACGCGGCCGAAAGCATGTGGGA
GCAAAAAGCGACGTCACCCTCTACCCGCGACGTACCACCCCTCCCATGCT
CCAGGCCGTCGAATGAAGGAGAAAGAATGTGTGAGGGCACCAGTGGCAAC
TCAAAAATGTGAAAGACTAGCCACGGTGGTAGGGGAGGTTATGTCAATTT
TGCTAATCCTGCGGACAAAGGTTCATGCTAAAGCCCTGGCCGCCGGGGAG
GTAAGGAGGTTGGAAGGAATGACGACGAGACTTTCTGTGCCATAGTATGT
CGAAGCATCTTGTCTGACGGCTGATTGCTATATCTTTTTTCCTTTTGAAA
GCTTCTGAAGATAGTCCATGCTATGCTGGCGGGGACAGGAATCGGCTCAA
ACGCTGCTCGACGCGGGGCGGGAGTGTGCACGCGCCACAAGGAGCAATAG
CGACCATGCCCTTGGTGAGGGGCCTGGTGAAGTCGAGGAAGAGAGTTATG
CCCATACTCAAAAGGGAATGAATGCTCTTACCAATGCGCTCCGCCACAGG
CTTGTGGAGAAACTGAAGCCAGGTAGAGGGCAGGACAAGGATTGTAGGGA
CGAGAACGTGAAGAGACAGGAAAAGGCATTCAATGAAGGACATTTAGTGG
AAAAGATGCAACATAGGCTGGAAAGAGGTTTGAGGGTAGTCACACGCGAC
GGAGGACGAGATAAATGTTCCTACCTGTATGACCACGAAAGACTCGTCCC
TAAAGTGGAGCTAAACCCTGTAGTAATAGGCTCAGCAACCAGTGTCGTGA
ACGACGACGCCGTCCTGCAGGAAAATCTGGGGCTTCCTTCTGCCGCCCGG
AGCGGGTGGACGCGTGCAGCTCGGTATCCTGGCCTTGGTGAGCCGGCAAT
GGAGGGCTCTGGCTGTGGCCGACACTTTCTGGCGGCCCATCAGTTTCGAC
CTCTTTCCCGCGTGGTCAGTGGGAAGGAAAGAGGCACACGGTGGGAAAGA
TTGGAAAAAAGAGGCGCAAGAAAGGGTGGAGAGCGACATAGAGGCCAAGG
GGATCGTGCAGCGGCTGAGTGCGCCTGCAGCAGAGACGGAGGTGGAGTCA
ATGAGATCCTCCATGTTGTCGCTCTCCACCGCGTCCAGCTATACTCGAGA
CAGTAGCAGCACGGGTCTTTCTCCTGGGATTTTGGCTGCTTCTACCCCTG
GAGGAACAATCTTGTCAATCAACACGCCTCGAACAGGATGCCGGGCGCAA
GTCATGGCCTATGTTGCCGTCGGGAACCCACGGTTCCGCAACGCGTCCGC
CTGGCAGAAGAACATATACATGATCTTTGAAGTGACTGATATCGCAGACA
ACTGCCGCCTCTTCTACGGCGAGGGCCCCATTCAGGTATCCGCGGCACCC
TCCGACTGGCGCGTGCCGTTGTGAGGTCTCTGCGCCTTTCTCAGCCGCGG
ATCGAGACCAGGAGCCGGGACGGTTCCCAACCGTTCGAGAATAATTTAAA
TATGGCCACGGGCCGAAGTATTCCGCGAATTTACGTTTGCGGGTGGTATT
ATGCGACCATCGCTCAGGGAGACTGGCTTTGCTATACTAGTCCAATAAAA
CCGCAAAACGCCATGCAATGACACCCAATGCTCCATATTGGCAAGATTTC
TTGCCAGGATGCTCCTTCTACATATGGGATCCGGACACAGTGTGTTTTTA
GGTCAGAAGGACAGATAAAATTGGCGGCAGCCTTTCACGTGGTTCCAGCG
GACGAGGATAGAGTGGTCGGGCGCGAAGTAGGGGTGGAAGACGGGGAGCT
TGAGAGGCGCCGTATGTACAAGGTGGCAGGCGGGTACGCGGAAGAGTATG
CGACGCATACTTCGTTTGTGTCCCTGGATTTTAATAATGCGGATGGGGAT
ACTGTTCGGCAATTTATAAACAGCTTGCTGGCACCATGAGGCTCGGCTTG
GACAGATGCTTGGAGGCATAGTGGCCTTTGTAGGCGTTGTCAACATAGAG
AATTTCCTGAGGGTGTACAAATGGCAGAACGATGGGCAAATTCATGGTAT
ATCTTGGCGCAGCTCTTGGGAGATCAAGGAGAGCGACACGTTGGGATGGG
GCATGGACCACGGGGTTCGACACCGGCATCCTCGCATTTAATTCCCAGAC
ACTCCTGAAAGGTCCCATGTATTCGGGCGATGGAAGTAAGACATGTAGAT
GTATCTGAAGAGCGGTGTAGATGCTCGTATAGAGGATTGGTTCAGCATCA
TGTATAAGTCGCTTTCTGTCATTTACAGCCGAGTGTCGCCTGTGATATGA
CTATGCACTGAAAGTACTGTATACGGCTTACATCAAAGCTATATCCTTCT
CAGATGGACTCTTAATGTGTGTATAGCTATGGGTGTCGCGGGAAAGGGCT
CGTGGTAGAGATAATGGAGAAGAGAATATTACTAGAGCCATCTGCAATTT
TGAAAGTTAATCGAGGATAAAACCCATAGGCTTGCTTTTACCTTGTTACT
TTTGCACCACCAAAGGTGTGCTTCTGCATCTTACTCGCTGAACATTTGCA
ATTTTCTACTATTTCCATGTGAACCGCGTGAAGCCAAGATGGAGCCACCC
GGTTTTC

Coding sequence (CDS) from alignment at CM002465.1:844238..847144-

>rna5378 ID=rna5378|Name=rna5378|organism=Nannochloropsis gaditana|type=CDS|length=501bp|location=Sequence derived from alignment at CM002465.1:844238..847144- (Nannochloropsis gaditana)
ATGCAACATAGGCTGGAAAGAGGTTTGAGGGTAGTCACACGCGACGGAGG
ACGAGATAAATGTTCCTACCTGTATGACCACGAAAGACTCGTCCCTAAAG
TGGAGCTAAACCCTGTAGTAATAGGCTCAGCAACCAGTGTCGTGAACGAC
GACGCCGTCCTGCAGGAAAATCTGGGGCTTCCTTCTGCCGCCCGGAGCGG
GTGGACGCGTGCAGCTCGGTATCCTGGCCTTGGTGAGCCGGCAATGGAGG
GCTCTGGCTGTGGCCGACACTTTCTGGCGGCCCATCAGTTTCGACCTCTT
TCCCGCGTGGTCAGTGGGAAGGAAAGAGGCACACGGTGGGAAAGATTGGA
AAAAAGAGGCGCAAGAAAGGGTGGAGAGCGACATAGAGGCCAAGGGGATC
GTGCAGCGGCTGAGTGCGCCTGCAGCAGAGACGGAGGTGGAGTCAATGAG
ATCCTCCATGTTGTCGCTCTCCACCGCGTCCAGCTATACTCGAGACAGTA
G

Synonyms

Publications