rna5377, rna5377 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5377
Unique Name	rna5377
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3593
Alignment location	CM002465.1:841811..844379 +

Link to JBrowse

Properties


Property Name	Value
Product	gtp binding protein
Orig transcript id	gnl\|cribi\|Naga_100135g9.5867.mrna
Orig protein id	gnl\|cribi\|Naga_100135g9.5867
Gene	Guf1
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:841811..844379 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Guf1	gene5198	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5377	rna5377-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25310.1	cds5364	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:841811..844379+
coding sequence from alignment at CM002465.1:841811..844379+

mRNA sequence

>rna5377 ID=rna5377|Name=rna5377|organism=Nannochloropsis gaditana|type=mRNA|length=3593bp
CGAAGCCAAAAATGCATTCAATTGTGTTACAACTGACGATAATTTGGCCG
TTTTGTTTGTCTTTGCGTCGACTGGAGACTATTTCGGTGGTTATCATAAT
CGACGAGTCGAAAGGGACGTCGTGAGTCGAAGGGGTAATAAGAAAGACAC
ATAGAAAAAAAAAGGTTCCAATTCGCAAGATAAATGGGCAAACATGTGAA
TATGAAAGAGAAATGAAATTCGTGGCGACTTGAATGTAAGGGGAATTGAG
GATTTTGTAGCTCCATGCTTCTTGTCACACAAGGTTCAACAAATCTCGGA
TCAACAAGTGTTAAATTTAAGATCGCCCCTTACGTACTTTGATAAAGAGT
GATCAATGCAACACATGCACAGGAAACTCCCCTCCGTATGCCTACTAGGA
CCTGACGACAATCACATTCACCCTGTTGGTGAAGCTCGATTCCTGCCAAT
GGAGCAGATCCTCCGGTGCCCTAATCCCGATTGTCGGGGGACAGACCTGG
AATACAGCGAACCTGATGGCGCTACCATTTGTATGGCCTGCCATACCATC
GTGGAGGAAAATGCAATCGTCTCGTCCGTCGAGTTTAACGAGAATAACGC
CGGAGGGGCGTCGACTGTTGTGGGTCAATTCGTGGGCCCGGAGATGACCA
AAGCCTACAGCTCCGCAGGGCGTGGTCGCCGTCGATTCTATACACGCGAC
TCCCGGGACACCACTTTAAACAACGGTCGCCGCGCCATCCAGCAGGTCGT
ATCTCAGCTTCGACTCCGCCAAGCTTTTGTGGACCGGGCCTGCCGCCTCT
TCCGGACCGCCGTGGAGCGGAATTTCGTTCAAGGCCGGAAAACCATGTGC
GTGGTCGCCGTCTGTTTGTACATGGTGTGCCGGGAGGACAACTCCCCGCA
CATGCTCATCGACTTCTCGGACGCCGTGCAAATCAACGTGTACGTCCTGG
GCCACGCCTTCCTCAAGTTCAAGCAGCTGACCGGTCTCAACCTGGCTGTT
ATCGATCCGTCCATCTACATCCACCGATTCGCGGCCCGTCTTGAGCTTGG
CAGCGAGCAAGAACAAACCCAAGTCTCGCAACTCGCCCTTCGTCTTGTCG
CGTCCATGCAACGCGATTGGATTCAGGCTGGACGCCGGCCCTCGGGCATT
TGTGGAGCTGCCCTTTATCTCTCGGCAGTTTACCACGAAAAACCCCGCAC
GTACAAGGACGTCGGGCGGATCGTCCGAGTCTCGCCAGATACAATCAAGA
AACGCGTGGACGAATTCGAACGCACTCCGATTTCAGGGATGATGTCCCGG
GAAGAGTTGGCGGAGATGGCGATCTCGGACTTTGAGGACCTGACACGGAG
GCAGGGGCCAGGGTCCTACTTGGGGGAGGCGGACCCGCCCTCCTTCACGC
GAGCGCTGAAAATGAAGGAAGCCCAAGCATTGCAGGAAGGGAAAAAGGAT
TTTGAGGAGAGGAATGGGCCCGGGGCCAAAGAGCAGGAGAGGTTAGCGAC
GTTAAAAGACTCTTCTACCCCGTCGGGCCCTGGTACTGTCAGTGCCGCCG
CTGCCGCAGTCGCTGCTGTGGCTGCCGCCGCTGCCACGATAGGAAGCAAA
AGAGGCGGGCTTTGCCGTGGGAGGGGACGCGGAGCAAGTGTAGCCACGAT
ACGGAGCAGCAAACGAGTGCGGAGGTCGGAGCCTCTCGAAGAAATTGCGC
AGGAAGAGGACCCTCTCCCTCAGGAAGAAGACGAGGATGAAGAAGGTGGG
GTGGGAGATTTTGACGGGGGGTTGCACAAGGAGCTGATGGATCAGTTGTT
GGATGAGGAAGAGGAGAAAGCGAAGAAGATCGCGGTGGCAGAAGCGGCAG
CGGCGGGATGTCAGGCACCTGGTCGTCAACAGCATGGGGGAAAGAAGGGC
GGAGAGATAGCTTTGTCAGAAAGCGGCGTTGAAGCGCTTATAGGTGATGG
AGTACTGCAGGACGAGGCAAAAGAAACGGATGATACGGCGCAGTACATTC
GGTCGAATGCTGAGGTAGAGAAATTGAGCAAGGTCTGGCATGAAGTCCAC
AAAGGATATTTGGAAAAGCAAGCACGAAAGAAGGCGGAGGAGGAAGCTGT
GAAAAAGAGAGCAGAGGAAGACTTTAATTACAGGCCACCGGGCCAAAGCA
ATCAGAGAAGGAAAGCAGCAGCGGCGGCAGCGGCGGCGTCTGTGGTTTCA
GGAGCGCAACAAGGAGCAGGGGAGGGAGGTGCCATTACACCAGCAGGGCC
CGAAAGGTCCCCTGCTGAGATCGCCGTGTCTAACCATTTGGCGAAGAAGC
GCATTTCTAAGAAGATCAACTACGAAGCTGTGAAAATGCTGGGTAATGAT
GATGACTTGGACGCGCATCCTCCAGAATTAGAGGCAATGATGTCTCAGCA
TCAAGCGTAAGTCTAAAGACGTCAACTCATTTTGCATGAGAAAGCGCGTT
TTGTATCTGTAAAAATTAAGTGTTATACAAGAGATTAAAGAAAGCACAAG
AAAAGGCTATATTCTTATGTTATCTGTCCGAGACGAATGCCCAACTGCAG
AGATTATTGATCACCAGTAGAATATTCAGTGTCAGATCCAAGCATGAAAC
AGCGAAGATGATGACACGGACATGTCATGTGGGGAATTCTTTCTTTGATC
TACTATCTGCTCTTCGTAGGGGGGAAGAGCAGGCGTATCGCAGGCGTACC
TCCTTTGAAAAGCGTGAGCCTTGAGTCTTCCAGCTTATAGCTCCATAGAT
ATGTCGCGCCCGAGGAAATTGACATGGCGCAATAATTGTGAAAGGTGCGC
AGGATCCTTCCACAAATGTTGGAACCGTGCTACTATAGATTGTATGAGTT
TACGCCACTGATTTTACGCTATTGTTGCTTCTCCGCTGGATCTTTCACAC
CTATCAACATTATATTGGAATGATTTGTGACAGATATTCGAACATTGTAC
CCGAGCACAGGTGCCTTCGATGATTTCCTTTGGCAACCGTGGGCTATTTT
TCGTTTCTGCCTGTACATGTGCAAACTCGCAAACCCATTAGTCCTTCTGC
CCGTAGCCATGTCTGCGAGCTTAATGATATAAAGAATAGTATACTAATAC
GGTCTATACTCAAAGACAGTACGACTTGAGAAGAAAAGTTTTCACAGAGT
TCCAAAGTGTACAGCATTGCATGGGAAATACGTGTCAGCTGTGAATCTGC
AACTCACACTGCTGCTCTCTGAGACACAACCGGGCCAATTGCGAGAAGTG
GACTGGTGTCCTGAGGCGGTGGACGAAATCGGCTAACGCAAGTTTGTGTT
CAGAACTTCTCATCGTTCTGCTGGACTATTGGCAAGACTTCGTATAGAAT
TGCGTCGTTTCGTGATTTAGTCCTTCATATTGCATCCCTACGGAGGGAGG
AGATACGAGATGTCAGTATTGAAGGCAGTATAGTGTCAGTCTTTGAACCG
GCGCTCCGTCGTGCAATGCTTCAATAAAATATGAAAACCTTGCATGCTCA
GGAATGAAAAGATTGACGAAAGTTAGTCCTGTGATATTCCTGGAGAAAAC
GCAAACATACGGAAAGACCAATAACATACAACAAAACAGGGGA

protein sequence of rna5377

>rna5377-protein ID=rna5377-protein|Name=rna5377|organism=Nannochloropsis gaditana|type=polypeptide|length=691bp
MLSLQHARCLLLLRSQSRASPWGWRTATAFLSTTSPATASPTSQPSHADL
TLKEIVAQIPDGLGSIPQSRVRNFSVIAHIDHGKSTLSDCLLELTGNITS
AEKKAKAQYTDTLKVERERGITVKAQTASMVYRHPKDGKEYLLNLVDTPG
HVDFAYEVSRSLSACQGALLLVDATQGIQAQTLSTYAFAQEAKLSIIPVV
TKSDLPHAQTDDVTLQMATTFDMDLEDVLVTSAKTGQGVHAILPAVIDRI
SAPGGDPTAPLRARLIDSWYDPTRGVVCLVQVVDGSIKENDRISAHSLAA
FESFSVQEVGVLCPYQLRTGSLLTGQVGYVIAGMRSTRQAKMGDTIYHHQ
KGAAEAAEAGVDPLPGFETAKSMLFASIYPLDTQDFDSLELAVNKLTLND
ASVTVQREGSNTSLGSGLRCGFLGLLHMEVFNQRLRDEFGTAVLLTSPTV
PYRIIHSQKEGETAEVKVIQTLADWPDPATTPNYRDLKIEEPVVEATILT
PVTSVGAITTCLKERRGVQEDVKYLDDKNVVLTYRLPWQEVVTDLHDVVK
NVSAGYASLNYKEAGYASDDLVKVELALNGEEVDALSFVCHRTKAEREGR
RVALKLKNVIDRQNFEINIQAKVGRKVVARERVAPYRKDVLVTKAGKNVG
GGDVTRKKKLLEKQKQGKKRAKMVGKVSLSQEAFWAVISKD

mRNA from alignment at CM002465.1:841811..844379+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5377 ID=rna5377|Name=rna5377|organism=Nannochloropsis gaditana|type=mRNA|length=2569bp|location=Sequence derived from alignment at CM002465.1:841811..844379+ (Nannochloropsis gaditana)
ctataCATCCTTTGTAACTATTTAACATTTCAACCAGGTCTTCGAAAGTT
GAGGGCTATCGTCAGCCATCCAATTCGCCCTTTCCCTACTCCTACCCTGC
TTAAGTAACTGTTCTTCCCACTCCATTCTTGGCAAAATACGGGACAACCC
CCCACCGTAAAATTGCCAACCCTTACATTTCAAGACCTGTCACACGTTAC
TTATCATGCTAAGCCTTCAACACGCACgctgccttcttcttttACGCAGT
CAATCTCGAGCATCACCATGGGGTTGGCGCACTGCCAccgctttcctctc
tacGACCTCCCCAGCTACTGCCTCCCCTACTTCCCAACCCTCACATGCCG
ATCTTACCCTCAAAGAAATAGTTGCCCAGATTCCAGACGGTCTTGGCAGC
ATACCTCAATCCCGTGTTCGTAATTTTTCTGTCATCGCCCACATTGACCA
TGGGAAAAGTACTCTTTCCGACTGTTTGCTTGAACTCACGGGTAACATCA
CGTCGGCCGAGAAAAAGGCCAAGGCCCAGTACACTGATACGCTGAAAGTG
GAGCGAGAACGTGGCATTACTGTCAAAGCTCAAACAGCCTCAATGGTATA
CCGACATCCCAAAGACGGCAAGGAATATCTTCTAAACCTTGTGGATACCC
CCGGACATGTGGATTTTGCCTACGAAGTCTCCCGGTCCCTCTCTGCCTGT
CAAGGCGCATTGCTCCTCGTCGACGCCACGCAGGGGATACAAGCACAAAC
TCTTTCTACCTATGCCTTTGCCCAAGAAGCGAAACTCTCCATCATCCCCG
TCGTCACCAAGTCCGATTTACCGCACGCTCAGACCGATGACGTCACGCTT
CAAATGGCTACGACCTTCGACATGGACttggaggacgtgctggTCACGTC
TGCAAAAACTGGTCAGGGCGTGCACGCTATCCTTCCCGCGGTGATTGACA
GGATCTCTGCCCCCGGGGGTGATCCCACCGCCCCTCTACGTGCGCGACTC
ATCGATTCCTGGTACGACCCCACACGCGGGGTGGTCTGTCTCGTCCAAGT
CGTGGACGGATCGATCAAGGAGAACGACCGGATCTCCGCCCATTCCTTGG
CCGCCTTCGAATCTTTCTCGgtgcaggaggtgggggtgtTGTGCCCCTAC
CAGCTTCGGACAGGTTCCCTCTTGACGGGCCAGGTCGGCTACGTGATCGC
TGGGATGCGGTCCACGCGGCAGGCGAAGATGGGAGACACCATCTACCACC
ACCAAAAGGGAGCCGCGGAGGCCGCCGAAGCCGGAGTGGACCCATTGCCC
GGCTTTGAGACCGCCAAATCGATGCTCTTCGCCAGTATTTACCCCCTGGA
CACCCAGGATTTTGACTCTCTGGAGCTGGCAGTCAACAAGTTGACCTTGA
ACGACGCCTCGGTGACGGTGcagcgggaagggagcaaTACCTCGCTGGGC
TCTGGGCTGCGATGTGGATTCCTGGGGCTGCTGCACATGGAAGTGTTCAA
CCAGAGACTACGGGACGAGTTTGGGACCGCAGTCCTTCTGACCTCGCCCA
CGGTGCCTTACCGAATCATCCACAgccaaaaagagggagaaacagCAGAG
GTGAAGGTCATTCAGACGTTGGCCGATTGGCCTGACCCAGCGACGACGCC
GAATTATCGAGATTTGAAAATCGAGGAgccggtggtggaggcgaccaTCC
TGACGCCGGTGACGAGCGTGGGAGCCATCACCACTTGCTTGAAAGAGAGG
CGCGGGGTGCAAGAAGACGTCAAGTACCTGGACGACAAGAACGTGGTGCT
CACTTACCGGTTGCCCTGGCAGGAGGTCGTGACCGATCTCCACGATGTGG
TGAAGAATGTGAGTGCGGGTTATGCGTCGTTGAATTACAAGGAAGCGGGC
TACGCGTCGGACGATCTCGTCAAGGTCGAGTTGGCCTTgaatggagagga
ggtggacgctCTTTCCTTCGTCTGCCACCGGACCAAAGCcgagcgggaag
ggaggagggtggcttTGAAACTGAAGAATGTCATTGACCGACAAAATTTC
GAGATCAACATTCAGGcaaaggtgggaaggaaggtggttGCCCGGGAGCG
GGTGGCGCCGTATAGAAAGGATGTGCTGGTCAccaaggcggggaaaaaTG
TTGGTGGTGGGGACGTGACACGAAAAAAGAAGCTTCTTGAGAAGCAAAAG
CAAGGAAAGAAACGTGCAAAAATGGTGGGAAAGGTGTCGTTGAGTCAAGA
AGCTTTTTGGGCGGTGATCTCCAAGGATTGAGAGTGAAAAGTAATGGATC
CATAGAAGGAGCGACCACGATATGGCGATATCATACGCGGGACTGTAACG
ATAGGAATAACTGTAGACGGCTACGTAGGTCCATCACCTAGAGCGTCAAC
CAGCGACAGAATAGTCCTTGGCACCACGAAAACCGGGTGGCTCCATCTTG
GCTTCACGCGGTTCACATGGAAATAGTAGAAAATTGCAAATGTTCAGCGA
GTAAGATGCAGAAGCACACCTTTGGTGGTGCAAAAGTAACAAGGTAAAAG
CAAGCCTATGGGTTTTATC

Coding sequence (CDS) from alignment at CM002465.1:841811..844379+

>rna5377 ID=rna5377|Name=rna5377|organism=Nannochloropsis gaditana|type=CDS|length=2076bp|location=Sequence derived from alignment at CM002465.1:841811..844379+ (Nannochloropsis gaditana)
ATGCTAAGCCTTCAACACGCACgctgccttcttcttttACGCAGTCAATC
TCGAGCATCACCATGGGGTTGGCGCACTGCCAccgctttcctctctacGA
CCTCCCCAGCTACTGCCTCCCCTACTTCCCAACCCTCACATGCCGATCTT
ACCCTCAAAGAAATAGTTGCCCAGATTCCAGACGGTCTTGGCAGCATACC
TCAATCCCGTGTTCGTAATTTTTCTGTCATCGCCCACATTGACCATGGGA
AAAGTACTCTTTCCGACTGTTTGCTTGAACTCACGGGTAACATCACGTCG
GCCGAGAAAAAGGCCAAGGCCCAGTACACTGATACGCTGAAAGTGGAGCG
AGAACGTGGCATTACTGTCAAAGCTCAAACAGCCTCAATGGTATACCGAC
ATCCCAAAGACGGCAAGGAATATCTTCTAAACCTTGTGGATACCCCCGGA
CATGTGGATTTTGCCTACGAAGTCTCCCGGTCCCTCTCTGCCTGTCAAGG
CGCATTGCTCCTCGTCGACGCCACGCAGGGGATACAAGCACAAACTCTTT
CTACCTATGCCTTTGCCCAAGAAGCGAAACTCTCCATCATCCCCGTCGTC
ACCAAGTCCGATTTACCGCACGCTCAGACCGATGACGTCACGCTTCAAAT
GGCTACGACCTTCGACATGGACttggaggacgtgctggTCACGTCTGCAA
AAACTGGTCAGGGCGTGCACGCTATCCTTCCCGCGGTGATTGACAGGATC
TCTGCCCCCGGGGGTGATCCCACCGCCCCTCTACGTGCGCGACTCATCGA
TTCCTGGTACGACCCCACACGCGGGGTGGTCTGTCTCGTCCAAGTCGTGG
ACGGATCGATCAAGGAGAACGACCGGATCTCCGCCCATTCCTTGGCCGCC
TTCGAATCTTTCTCGgtgcaggaggtgggggtgtTGTGCCCCTACCAGCT
TCGGACAGGTTCCCTCTTGACGGGCCAGGTCGGCTACGTGATCGCTGGGA
TGCGGTCCACGCGGCAGGCGAAGATGGGAGACACCATCTACCACCACCAA
AAGGGAGCCGCGGAGGCCGCCGAAGCCGGAGTGGACCCATTGCCCGGCTT
TGAGACCGCCAAATCGATGCTCTTCGCCAGTATTTACCCCCTGGACACCC
AGGATTTTGACTCTCTGGAGCTGGCAGTCAACAAGTTGACCTTGAACGAC
GCCTCGGTGACGGTGcagcgggaagggagcaaTACCTCGCTGGGCTCTGG
GCTGCGATGTGGATTCCTGGGGCTGCTGCACATGGAAGTGTTCAACCAGA
GACTACGGGACGAGTTTGGGACCGCAGTCCTTCTGACCTCGCCCACGGTG
CCTTACCGAATCATCCACAgccaaaaagagggagaaacagCAGAGGTGAA
GGTCATTCAGACGTTGGCCGATTGGCCTGACCCAGCGACGACGCCGAATT
ATCGAGATTTGAAAATCGAGGAgccggtggtggaggcgaccaTCCTGACG
CCGGTGACGAGCGTGGGAGCCATCACCACTTGCTTGAAAGAGAGGCGCGG
GGTGCAAGAAGACGTCAAGTACCTGGACGACAAGAACGTGGTGCTCACTT
ACCGGTTGCCCTGGCAGGAGGTCGTGACCGATCTCCACGATGTGGTGAAG
AATGTGAGTGCGGGTTATGCGTCGTTGAATTACAAGGAAGCGGGCTACGC
GTCGGACGATCTCGTCAAGGTCGAGTTGGCCTTgaatggagaggaggtgg
acgctCTTTCCTTCGTCTGCCACCGGACCAAAGCcgagcgggaagggagg
agggtggcttTGAAACTGAAGAATGTCATTGACCGACAAAATTTCGAGAT
CAACATTCAGGcaaaggtgggaaggaaggtggttGCCCGGGAGCGGGTGG
CGCCGTATAGAAAGGATGTGCTGGTCAccaaggcggggaaaaaTGTTGGT
GGTGGGGACGTGACACGAAAAAAGAAGCTTCTTGAGAAGCAAAAGCAAGG
AAAGAAACGTGCAAAAATGGTGGGAAAGGTGTCGTTGAGTCAAGAAGCTT
TTTGGGCGGTGATCTCCAAGGATTGA

Synonyms

Publications