rna5369, rna5369 (mRNA) Nannochloropsis gaditana

Overview
Namerna5369
Unique Namerna5369
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1533
Alignment locationCM002465.1:821597..822254 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100281g1.5085.mrna
Orig protein idgnl|cribi|Naga_100281g1.5085
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:821597..822254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100281g1gene5190Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5369rna5369-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25319.1cds5356Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5369 ID=rna5369|Name=rna5369|organism=Nannochloropsis gaditana|type=mRNA|length=1533bp
TCTATGCAGCTTCGTAAACCAATAAGGACCCAGCAAAAGTCACTGTGGCT
CTCCTCAGGACGGTATTGTCTGGAATGAATAGCTCATTTTCATTTGAGTG
CCAGAAGGCTAGTCCATACTGGGGATTTGATGGAGCAGTAATGCACGATA
CTTACTCCATTCTGACCTCCCTGCTTCACTTGCCAGGCATCGAACAGGCC
CGGAGCCGTAGCGTACCCTACTTTGTGGTCTTCTCGCTTCCCAGCAACGT
ATGGAGGAGCATGATTTCTTTGACAAACTGCTTCAGTCGAATTTGCCCGT
GCCTGAATTTTCGAGACTGGGAACGCCGTGGGTACGAGACGATATCCAGC
GGTACTTATTTATCTTCAGTACCTGTATCGACAAATGACACTGTGGTCCC
GCTTCAAAGAATTAAAAAAGGTGGTGGCGCGGCTCTCACTACGTCAAGCT
CTGACTTGGCGGCCGTACCAGTGCATCCTGCTATTGCGTTGCCAAGATAT
GTCATGGACGAGGAGGTGGAGCGGTGCTTCGCATGCGCGGTTCCCTTTGA
TTTCGCGCAGAGACGTCATCACTGTCGGCGTTGCCGCAACATTTTCTGTG
CGGCTTGTACGTCCCGAGAGCGCCCCATCCTGCTCTACATGCTGTCCGAT
CCTGTCCGCGTATGTCTTCGCTGCGGAAACGAAGTAGGAAAGGAGAATGA
ATTTGTGGACCGGCATTTAAAGGGCTTGACGGAAGGGTTGGAAGTGACGG
TGACACGGGGTGTCAGCGCCGTGCTTGGCCGACGACAGCCAGTCTCCCTC
ATTCTCTCTGCGGATCTGAAGACACTCCAAGTCGTCGATCTTCCTTCGCT
TCCCGCCTACCACGACGCCTCCCGCCCTCATTCTTCGCACGACTGCCCAC
GCGTCCTTATGCACTTCCCTCTGGTGGACATTGGTGGGGTCTCGGAGGTT
GGCTCCCTCTCCTTCCTAATCCTAACTAGCACGGGCGTTCGACGCAAATT
TGAAACGAGCGGACCGGGGCAACGGCAGGCATGGGTGGCGGCGATACGGG
AAGCGGCGCGGCTTCTCCCTTCGATGGCAGGGTTGCGGAAGAGAATCGAG
GAGGAACGGATCCAACGTGCGACGCAAGAGAGGATGGCGATGGCGGAGCG
ACAGGAAAAGGATGCGTTGCTAGCGAAGAAAAGGGAGAAGGCGGCCGTCC
GGCATGCCATCGCAGACAAGTACGGTCTGGCGAGAAGATGAATCACAGGC
TTCCAAGTCTCCCGTGTGCCGAGGGATCTGGACAGAAAAAAAGCAACTTG
TGGGCTGCTACAGCGGTGTAAAGTGAAGGGTAGATGTGAGACAAATGGGG
ACCGTATGTGCAGCCGTGTAATGATGGATGGGGTGACAGAGTGAGGACGT
GGGGGGGTCGGGGGGCAGGGAAGGGCGCGGCAAACGAGGTGGGATTAGAT
GCTTGTCGTGTCCCCAAAGTATGTACAAACGACCGAACCTTAAAGAAAGT
GCTAAAGTTAGACTGCAACCGTATTTGTGTTTG
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protein sequence of rna5369

>rna5369-protein ID=rna5369-protein|Name=rna5369|organism=Nannochloropsis gaditana|type=polypeptide|length=89bp
MGALCCCARGGTTASAGDTHGDHGAIPYVLSAHEKEALRARRAEAAEARR
NNFKQGGGGERLKEQTERREQAQRDAAFTGQNAMQWGTK
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mRNA from alignment at CM002465.1:821597..822254+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5369 ID=rna5369|Name=rna5369|organism=Nannochloropsis gaditana|type=mRNA|length=658bp|location=Sequence derived from alignment at CM002465.1:821597..822254+ (Nannochloropsis gaditana)
GTCAGTCATTGCAACGGTCATGCCTAATTTACTACGACCCAGCACCTGAA
AAGTATACCAGGCAGGCCTTGGACGTACACCCCCAGCTTATAGAAAAGCC
TTATTTGACTTTTAGGCTGGAATAGGGTTATTGTGCTGGCGTTTAAAGTT
ATAAACCAATAAACTGGAGTCAGCTTGCAATCCTGTAGATCGCGGTCTCT
GTGATATCCGTTTACTAGCCGAAGAAAAACCCAACACATTCGTACATGCT
CCTATTATATCAAATAGGATGGGAGCCCTTTGTTGTTGTGCACGCGGTGG
CACGACTGCATCTGCCGGTGACACACATGGAGACCATGGCGCTATCCCAT
ACGTCCTAAGTGCACACGAGAAGGAAGCACTCCGGGCACGCCGCGCAGAG
GCTGCAGAGGCCCGGAGAAACAATTTTAAgcaagggggtggaggcgagCG
ATTGAAGGAGCAGACGGAACGAAGAGAACAGGCACAACGGGATGCGGCGT
TCACAGGGCAGAATGCCATGCAATGGGGGACCAAATAAGGATAAGATGAA
CGAGTTCTCGTGTAAAATACCCAAGACTGGACATGTCAAACCAAAGCAAG
TGTACCAATCAAAAAAAAGATGTATGAATTTATAGTCATGATCAACATCT
GGGGACCA
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Coding sequence (CDS) from alignment at CM002465.1:821597..822254+

>rna5369 ID=rna5369|Name=rna5369|organism=Nannochloropsis gaditana|type=CDS|length=270bp|location=Sequence derived from alignment at CM002465.1:821597..822254+ (Nannochloropsis gaditana)
ATGGGAGCCCTTTGTTGTTGTGCACGCGGTGGCACGACTGCATCTGCCGG
TGACACACATGGAGACCATGGCGCTATCCCATACGTCCTAAGTGCACACG
AGAAGGAAGCACTCCGGGCACGCCGCGCAGAGGCTGCAGAGGCCCGGAGA
AACAATTTTAAgcaagggggtggaggcgagCGATTGAAGGAGCAGACGGA
ACGAAGAGAACAGGCACAACGGGATGCGGCGTTCACAGGGCAGAATGCCA
TGCAATGGGGGACCAAATAA
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Synonyms
Publications