rna5362, rna5362 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5362
Unique Name	rna5362
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1254
Alignment location	CM002465.1:807185..807531 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100281g9.5087.mrna
Orig protein id	gnl\|cribi\|Naga_100281g9.5087
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:807185..807531 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100281g9	gene5183	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5362	rna5362-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25321.1	cds5349	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:807185..807531-
coding sequence from alignment at CM002465.1:807185..807531-

mRNA sequence

>rna5362 ID=rna5362|Name=rna5362|organism=Nannochloropsis gaditana|type=mRNA|length=1254bp
ATGGCCAGTGGTATGCTTCCTAGCGACCCGCAACTAGGGCAGGCCCCCCG
CCGCCGTCGTCGGGTCCTGCTGATTTCTCTTGGTGCACTGTGCCTCATCG
TGGTCGGTGCTTTAGCCATTGGCTTCGGATTTAAGGGCAAAGACAACGAT
AAGAGCATATCAACGCATGGCAATAAGCACGGGCCCGCAACGGAAGCGGT
TTCTTCAATGGCTGACACGAAGAACACGATCGTCCCCTCCGCACCCGAAT
CAGCGCCGGCTACTGTTGTGGAGCCCGTGAAAGCTCCTGTTTCCGAGTCC
AAGCCCAGTGCTCCCGCGACTACCACAAAGGTAGACGACTCTGACAAGAT
CCTGACGTTTGGGGACGGAGAGAGGAACCCCCTCGGTCCTTTGTTCGGTG
CTCTGCCTGGCGCTGCGGCTATCAATGGCGCTTTCAATACCCTGGCTGCC
AGCGCTGCCAATCTGGCTGGCTTGCAAGTCTGCTATCCTCAGAACGGTGA
GGAGCTGAAAGGGATGACGGAAAGCGGGAGCTCCTGCAGCGTGATCATTT
TGAAGAAGGGGTCGTCCGACAAGTACACTTTACCCTCGACTGTAATCGTA
ACCTCTCGTAAGATCGTCTTGGGTCATCCCATCGACCTTCCGCAGATCCA
TCCTGACAAGGAAGTGTACCGCCTTTTCGAGGTGAAGCCTGGCGGCAGCT
TGGATATTCGTTTCGTGAGCCTCTTCCGCCCGTCTCCACGGAAGGTGGAC
GAGAACCTTAGTGTTATCGTTGCGGGCGTTGCGCTTGTGGAGCTGGGGGG
CTACATGCGGGGCACAGCTTGTATTTTCCGACAGCCCGCGCAAACATTTG
AAGCTTTCGTGAAATCACTCGAAACCCCCTTTGCACGCAAACGCATTGTG
GGTGGTTTCGTCTTGGTTCTGGGAGGGACTTTCTTTTGCTATGGATGTCA
AGCTGTTCGCTGGGCACCTTACGGGTCGCCTAATGTCAATGTTGTCCAGA
TCGGACGGGATTATCTAGTCATGGCCGGCTCGAATGTGTGCATCGGATGC
TATCACGTTGCCTATTCACCCTACGGTTCTGCAATCAGTGTGGGAAATGC
CATGGGAGTCTTTGGTGGCGTGAATATCCGAATTGGAGGCGGAACGATCG
GATCCTCCGTGCTAAAAGGACAGTTTGGTGCTGGACAAAATTTATTCGTC
GGCGGCGGAGTGCTTGTGAATGTGGGTCACCAGCAGCAGACTGCTTTTGA
GTAA

protein sequence of rna5362

>rna5362-protein ID=rna5362-protein|Name=rna5362|organism=Nannochloropsis gaditana|type=polypeptide|length=79bp
MQTFISCKIKEILFATHKNLIRTVERNDNKVEVQLEVHLFVWCVHAPMLS
EKLLWFLDALDSKAFRDTMLNDKSKYVLG

mRNA from alignment at CM002465.1:807185..807531-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5362 ID=rna5362|Name=rna5362|organism=Nannochloropsis gaditana|type=mRNA|length=347bp|location=Sequence derived from alignment at CM002465.1:807185..807531- (Nannochloropsis gaditana)
ATGCAGACATTTATTTCGTGTAAAATAAAGGAAATTCTGTTTGCTACGCA
CAAGTGACCCAGTACCGCATAAGATTTTTTTGGCATTCAAGCCTGCAGAG
CTAATTTAGAAATTTAATTCGAACAGTTGAGAGGAATGACAACAAAGTTG
AGGTACAGCTAGAAGTTCATCTGTTCGTATGGTGTGTTCATGCTCCCATG
CTATCGGAAAAACTATTATGTGAGCCTGAAGAAGAATAAAGATTTTCTTG
TCAAATCTTTTGGTGAATAGGGTTTCTAGACGCATTAGATAGTAAGGCAT
TTCGTGACACAATGCTGAATGACAAAAGTAAGTATGTATTGGGCTGA

Coding sequence (CDS) from alignment at CM002465.1:807185..807531-

>rna5362 ID=rna5362|Name=rna5362|organism=Nannochloropsis gaditana|type=CDS|length=720bp|location=Sequence derived from alignment at CM002465.1:807185..807531- (Nannochloropsis gaditana)
GGTTTCTAGACGCATTAGATAGTAAGGCATTTCGTGACACAATGCTGAAT
GACAAAAGTAAGTATGTATTGGGCTGAAAATTTAATTCGAACAGTTGAGA
GGAATGACAACAAAGTTGAGGTACAGCTAGAAGTTCATCTGTTCGTATGG
TGTGTTCATGCTCCCATGCTATCGGAAAAACTATTATATGCAGACATTTA
TTTCGTGTAAAATAAAGGAAATTCTGTTTGCTACGCACAAGGTTTCTAGA
CGCATTAGATAGTAAGGCATTTCGTGACACAATGCTGAATGACAAAAGTA
AGTATGTATTGGGCTGAAAATTTAATTCGAACAGTTGAGAGGAATGACAA
CAAAGTTGAGGTACAGCTAGAAGTTCATCTGTTCGTATGGTGTGTTCATG
CTCCCATGCTATCGGAAAAACTATTATATGCAGACATTTATTTCGTGTAA
AATAAAGGAAATTCTGTTTGCTACGCACAAGGTTTCTAGACGCATTAGAT
AGTAAGGCATTTCGTGACACAATGCTGAATGACAAAAGTAAGTATGTATT
GGGCTGAAAATTTAATTCGAACAGTTGAGAGGAATGACAACAAAGTTGAG
GTACAGCTAGAAGTTCATCTGTTCGTATGGTGTGTTCATGCTCCCATGCT
ATCGGAAAAACTATTATATGCAGACATTTATTTCGTGTAAAATAAAGGAA
ATTCTGTTTGCTACGCACAA

Synonyms

Publications