rna5360, rna5360 (mRNA) Nannochloropsis gaditana

Overview
Namerna5360
Unique Namerna5360
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2673
Alignment locationCM002465.1:802990..803324 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100880g1.678.mrna
Orig protein idgnl|cribi|Naga_100880g1.678
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:802990..803324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100880g1gene5181Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5360rna5360-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25327.1cds5347Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5360 ID=rna5360|Name=rna5360|organism=Nannochloropsis gaditana|type=mRNA|length=2673bp
GAGAGGAGCCCCCGTGAAATTGCATGGTGTCAAGATTCCTTAAGACGTTT
GTTTTTGTCTACTATCATGCTAAAGCTTTCAATTGCGCAATTGCCTGAAG
TCCGCGGATACTTGGACTTTATGAGTCGTCTTGGACCGGGTTAAGCACAC
GTACATTTCTCTGTTTCCTGACCCGGCTCGGGACATCAAATGGGCCATGA
CCCGAAGACATGCCGAGCGGCCCTGATCTCTATAGGTGTGTAGATGCTTG
CAAACAATTTAAAATCACACAAACTCATTCGTATCCGCGAAAGGCACCTA
AGAAAAATCATTTTTGCGGCGCAAATCGTAGATCCACCGCGGTATTCATT
TAATACGCGCGGTATTTGAAGGAGACCGCGCAGAACCTAACGAATCACAA
ACAAACAAAAGTATTTTGACAGCTCTGTTGCTCTATGACTAACGGTGCGC
ATTCGAGCGACCCGCAAATAGGGCAGGCCCCCCGCCGCCGTCGTCGGGTC
CTGCTGATCTCTCTGGGTGCACTATGCCTTATCGTGGTCGGTGCCCTAGC
TATTGGCTTCGGAATCAAGGGCAAGGACAAGAACAACGAAGCGCCCACTG
CAGCAGAGACGGAGCCTATTTCTTCCTTGGCTGACATTACAGATGCTCTT
ACCCCCACTGCGCCCGATTCAGCACCAATTACCGCGCCGGCCACCATCGT
GGAGCCTGTGAAAGCACCTGCTTCCACTGCTTCCGAATCCAAGCCTAGTG
ATCTTACCATTGCCACCAAAGAAGACGAGTCCGACAAATTAATATCTTTT
GGGGACGGAGAGAGAAACTTCATCGGTCCATTGTTCGGCGCCCTTCCTGG
CGCTGCGGCTGTCAATGGTGCTTTCAATACTCTGGCTGCCAGCGCTGCCA
GTCTGGCTGGCCTGCAAGTCTGCTATCCCGAGACTGGCCCCGAGCTCAAG
GCGATGGTGGAAAGCGGGAGCTCATGCAGCGTGGTCATTTTGAAGAAAGG
ATCCTCCTACATTTACCTTCTGCCGTCTACCGTGATGGTAACCTCTTCTG
TAATTATCTTGGGCCATCCCATCGATCCTCCGCAGATCCATCCTGAGAAA
GGAGTGTACCGCCTTTTCGACGTTGCGGCTGGGAGTCACATCGACATCCG
CTTTGTTAGCCTCTTCCGCCCGGCCCTCCGAAACGTGGGAGGCAATCGCT
CACTCATTGTCGCCGGTTGTGTGCTTGTGCGGACAGGAGGGTATTTCAGG
GGCTCAGGTGTTATTTTCCGACAACAAGCGCAGACATTTGAAGGTTTTGT
CAAAGGTCTCATGGACCCCCTGGCACCCAAACGTATCGTAGGCGGTTTTG
TCTTGGTGGCAGGCGGGGCTTTCTTCTGCTATGGCTGTCAAATCATTCGC
TGGGCGCCTTATGGCGCACCTAATATTAACCTCGTCGAAGTAGGACGTGA
CTATTTGGTGCTGGCCGGTACAAGTGTATGCATCGGTTGCTATCACGTTG
CCTGTGCGCCATTCCAATCCTCAGTTAATGTGGGAAATGCTGTGGGGGTG
TTAGGTGGCGTGGGAATTCGCGTTGGGGGTGGAACAATCGGTGCTGCCGT
ATTGAAGGGTCAATTTGGTGCGGGAGAGAATCTTTTTGTCGGCGGGGGAG
TCCTCGTCAATGTGGGTCACCAGCAGCAGACTGCTTTCGTCTGCCTCAAT
CGTGCTAACTTTGGTATGACAGCTGTCGGATCAGGAGTAATGGTGCTTAT
TGCAGAGCTCGAAAATCGTGCTTGGGGCGTTGCTGCCATCACTGGTGCTG
GTCAGGTGTATTCTAATGGAGCTGGCGTGCTTGACAAGACCGGAGGAGAA
GTTGTAAATTGTGCAATCTCCTTTTTCCAGGCCCTCGCGGGTGGAAGTGT
TTATCTCGGCACTGGAGACATGAACATGGTGGGCGAGCAGTTTGCTCGTG
TCGCGGTGACCCTGGATCAGAATGGTGTCGGGATGACCTTCTTCAACGGT
GCGGGACAGACAAGTTTGATTTATGTTCCAAGTTTCGTGGCGGCAGTTGC
CCGTTCGCAGAAGATTCTCGGCGCTGAGGGATTCCTGGGCGCTGGTTTCT
TCACGAACGTCAACAATACACGCTGGACCATTCAAGTGGTGAATGCCGGT
ATTCCCGGATACGAGGGATGGGTTGGTCTCGGAGCTGCCCTCTTTGTCCG
ATCCCGCACTACGGTCAGGCGCGTGGTCAACTTCCGCTTCAATCCTTACG
CATGGGTAGTCAACGGCCAAGGCGTGCCTGGGTCTGCGTACCGCGAGAAC
AACATTTTCGTCAACAAGGACGGCATTCGCATCAACAAGCCCAACCCGTC
GAAGAGCCGTCTGCTCGCTGCCGTGGACGAGATGGTGGATGGTCATCTCA
AGTCCAAGAGGAATACCCAGGGTCTCCTTGCGGGCATCAAGAACTTTGTG
GACCGTCCGGCCATCGTGATGGCGAACAGCGAGATGGACTCGGCACGCAT
GCGTCCTCCCGATCCCCAGATCTTGGCCGGAAAGATCCTGTCCATGGTAA
CGTCTCTGAAGCACAAGCGCCGTCTTCAGGGTCAAGCCGTCGTCAATCCT
ACGCGCATGATGAACATGTTGGCTGGTCTATCCCCAGCAAAGCTTATGGA
GGCCTGGAAGGAGGCTACAGAGG
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protein sequence of rna5360

>rna5360-protein ID=rna5360-protein|Name=rna5360|organism=Nannochloropsis gaditana|type=polypeptide|length=88bp
MECLGTEPTCARTTRACRRSMPRARSSTCCRHLCLSFRRPALCENWFPRW
AGRWKPLGPLPVFNTHQSKSIKINNLNYIMREREKFSS
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mRNA from alignment at CM002465.1:802990..803324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5360 ID=rna5360|Name=rna5360|organism=Nannochloropsis gaditana|type=mRNA|length=335bp|location=Sequence derived from alignment at CM002465.1:802990..803324- (Nannochloropsis gaditana)
ATGGAGTGTCTGGGAACCGAGCCTACCTGCGCGCGTACCACGCGGGCATG
CCGGCGATCTATGCCCAGAGCGAGGTCTTCGACCTGTTGCCGTCATCTGT
GCTTGAGCTTTAGGAGGCCTGCACTCTGTGAGAATTGGTTTCCGAGATGG
GCTGGTCGTTGGAAGCCCTTGGGCCCTCTTCCAGTTTTCAATGTATCTTG
ATCGACTGATGGTATGATACGGGATATACAAGAAGGAGAAGACATGACTA
AACCGAAGAGACACACCAAAGTAAAAGCATCAAAATTAACAATTTGAACT
ATATAATGAGAGAAAGAGAGAAATTTAGCTCTTAG
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Coding sequence (CDS) from alignment at CM002465.1:802990..803324-

>rna5360 ID=rna5360|Name=rna5360|organism=Nannochloropsis gaditana|type=CDS|length=534bp|location=Sequence derived from alignment at CM002465.1:802990..803324- (Nannochloropsis gaditana)
ACACACCAAAGTAAAAGCATCAAAATTAACAATTTGAACTATATAATGAG
AGAAAGAGAGAAATTTAGCTCTTAGATGGAGTGTCTGGGAACCGAGCCTA
CCTGCGCGCGTACCACGCGGGCATGCCGGCGATCTATGCCCAGAGCGAGG
TCTTCGACCTGTTGCCGTCATCTGTGCTTGAGCTTTAGGAGGCCTGCACT
CTGTGAGAATTGGTTTCCGAGATGGGCTGGTCGTTGGAAGCCCTTGGGCC
CTCTTCCAGTTTTCAATACACACCAAAGTAAAAGCATCAAAATTAACAAT
TTGAACTATATAATGAGAGAAAGAGAGAAATTTAGCTCTTAGATGGAGTG
TCTGGGAACCGAGCCTACCTGCGCGCGTACCACGCGGGCATGCCGGCGAT
CTATGCCCAGAGCGAGGTCTTCGACCTGTTGCCGTCATCTGTGCTTGAGC
TTTAGGAGGCCTGCACTCTGTGAGAATTGGTTTCCGAGATGGGCTGGTCG
TTGGAAGCCCTTGGGCCCTCTTCCAGTTTTCAAT
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Synonyms
Publications