rna5357, rna5357 (mRNA) Nannochloropsis gaditana

Overview
Namerna5357
Unique Namerna5357
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1475
Alignment locationCM002465.1:796595..797140 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101034g1.8310.mrna
Orig protein idgnl|cribi|Naga_101034g1.8310
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:796595..797140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101034g1gene5178Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5357rna5357-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25328.1cds5344Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5357 ID=rna5357|Name=rna5357|organism=Nannochloropsis gaditana|type=mRNA|length=1475bp
TCCAGACATGCCGGGAGGTAGAAACGCCTGGTCGGCGGCCCTAATTGTTG
CAGTCAGTTGCATGTATCCTATGACGGAGTCATTTTTCTATTCTACCAGA
GTGATGACAAGGAGTGCAACAATATCAATGCAGAGTGATGTTGTGGAAGA
TAACGAGAACGTGGAAAACGGTGTGCCAAATTGCCGCAAACTTAAATTTA
TCGATCGGCAGGGACTTTTACAGCGTGTGACAGTAGCCACCACTGCCGGA
ATATTGGGTAGCAGTATCACGGGTGCTTTCCCGTCATGTCCAAATGCTGC
AAATGCGATTGGCGAACTGCCAGAATGGGTATCTAACCCGCGCTTCGCGC
AGCACCTTGTTATCAATGTCCCAGATATGGCTGCAGCCTTATCCTTCTAC
ATGGATGGCCTGCAAATGCATGTACTGCGATCCCGACTTGTAGGGGGGCA
AAATAGTACATTTGTTGGGTATGGACCTGAGACATTGAAAACGCCAAAGG
CCTGGTATCCTGGTGTCTCTTCCTTTTCAATGTACGGGGCTCATTTCGTT
CTGGAACTGAACGAGGTTCTCAAAACGGAAGAGGGTGACACCCCTGTGCT
TGACCCTGGAAATGCCGTTGCCTACCTCCAGTTGGCCGTTCCCTCACTTC
GTCTCTCTAAACTGGCGGAAGCAGGGGGCAAGATAAAATCTGCATACGGA
TGGGTCCTTGTGGACTCTCCCGGCGGGTTACGCCATCAAGTCATAGTCGG
GATGCGGCGAGACCCCATCATGATGCTAGCCCTGAATGTCCCCGACGTGC
AGAAAGCCTCTGGCTTTTATGTCAATGCCCTGGGTATGCGAGAACAGCCC
TATCCGCTCTCACGAATCCCAGAGTCGATCTATGAGCCAAAGCAGCCGAA
GGGCAGCCGATTTCTCGCTTTTAGTGAGGACGGCTTCGGGATATTGCTAT
TGCCTCTCCCCAAAAAAGAGGCCAAAGCCGGTGTCCGTCTTGGAGGGGTA
GTGGATAAGCTGGCTATTCTTGGGACAGATGTAGTAGGGAAGGGAGGAGC
AGAGGATTGGAAAGCAAGCGGGGTGGATGTGAAGTTTGCTGGGGAGGCGC
CGGGCATAGGGACCAAAGTTGCGGTAACAAACGATCCGGTCACAGGCCTT
GGGGTGGTTTTGGTCGAGGCCAACGATTTAGAGAAGGAATTGGTGGGAAC
CGTTTCGGCTGGTGAGTAAAATTCCGAAAAAGAGATCACGAGAAATTGCG
GTGGGACACCATGCAGGCGTCGAACGCCTGCTTTCTGGTATACAACGTCA
TAAATCGCATTTTCCAGAAACTGAGAGGATCTAGGCAGAGGATGGGTGAC
AGAGAGTGAGGAGTCCTTTGAGAAGACTTATGTTTTCTATTGAACAATGA
TGGTCCTCAGGGACAAATTATGCGTTGGAAGTAGAGATACAAAATATCAA
TTTTCTGTCGAGTTTTCAGCAAATA
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protein sequence of rna5357

>rna5357-protein ID=rna5357-protein|Name=rna5357|organism=Nannochloropsis gaditana|type=polypeptide|length=128bp
MAGRSDQRRRFNVKNTHHNKTFVFQVCYAFRWQNEALPFGRLSLAAKYWI
SMPYISPDGAIYHIALQHFAKLDHNEVWDAYVLLNGKSVSRKGYVWIASN
MLNDLMSVEQIHNFVSHVKKQKEIGYAK
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mRNA from alignment at CM002465.1:796595..797140+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5357 ID=rna5357|Name=rna5357|organism=Nannochloropsis gaditana|type=mRNA|length=546bp|location=Sequence derived from alignment at CM002465.1:796595..797140+ (Nannochloropsis gaditana)
ATGGCTGGCCGATCGGACCAacggcggcggtgggaaaaTAGACTCTCGGA
CATGACCAAGAGGCGGCGACTTATGGCGAGCATGTCCAAGAAAGTCAAAG
TCGGTCTCTTTTCGACAGAGCAGACTGAATCTTTCAAGCTTCAACGTGAA
GAATACCCATCATAATAAAACTTTCGTATTTCAAGTATGCTATGCATTTC
GATGGCAAAATGAAGCTCTGCCTTTTGGTAGACTTAGCCTCGCAGCCAAG
TATTGGATAAGCATGCCATACATTTCCCCGGATGGAGCAATATATCACAT
TGCCCTGCAGCACTTTGCTAAATTGGATCACAACGAAGTATGGGATGCAT
ATGTCCTGCTTAATGGTAAAAGTGTATCGCGGAAAGGTatggaggaaaaa
ttggtCATTAATCATCTATGCATGATTTGATGAAAGGTTATGTGTGGATA
GCAAGCAATATGTTGAACGATTTGATGTCTGTTGAGCAGATCCATAATTT
TGTAAGCCATGTCAAAAAACAAAAGGAGATAGGATACGCGAAGTGA
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Coding sequence (CDS) from alignment at CM002465.1:796595..797140+

>rna5357 ID=rna5357|Name=rna5357|organism=Nannochloropsis gaditana|type=CDS|length=1161bp|location=Sequence derived from alignment at CM002465.1:796595..797140+ (Nannochloropsis gaditana)
ATGGCTGGCCGATCGGACCAacggcggcgCTTCAACGTGAAGAATACCCA
TCATAATAAAACTTTCGTATTTCAAGTATGCTATGCATTTCGATGGCAAA
ATGAAGCTCTGCCTTTTGGTAGACTTAGCCTCGCAGCCAAGTATTGGATA
AGCATGCCATACATTTCCCCGGATGGAGCAATATATCACATTGCCCTGCA
GCACTTTGCTAAATTGGATCACAACGAAGTATGGGATGCATATGTCCTGC
TTAATGGTAAAAGTGTATCGCGGAAAGGTTATGTGTGGATAGCAAGCAAT
ATGTTGAACGATTTGATGTCTGTTGAGCAGATCCATAATTTTGTAAGCCA
TGTCAAAAAACAAAAGGAGATAGGATACGCGAAGTGAATGGCTGGCCGAT
CGGACCAacggcggcgCTTCAACGTGAAGAATACCCATCATAATAAAACT
TTCGTATTTCAAGTATGCTATGCATTTCGATGGCAAAATGAAGCTCTGCC
TTTTGGTAGACTTAGCCTCGCAGCCAAGTATTGGATAAGCATGCCATACA
TTTCCCCGGATGGAGCAATATATCACATTGCCCTGCAGCACTTTGCTAAA
TTGGATCACAACGAAGTATGGGATGCATATGTCCTGCTTAATGGTAAAAG
TGTATCGCGGAAAGGTTATGTGTGGATAGCAAGCAATATGTTGAACGATT
TGATGTCTGTTGAGCAGATCCATAATTTTGTAAGCCATGTCAAAAAACAA
AAGGAGATAGGATACGCGAAGTGAATGGCTGGCCGATCGGACCAacggcg
gcgCTTCAACGTGAAGAATACCCATCATAATAAAACTTTCGTATTTCAAG
TATGCTATGCATTTCGATGGCAAAATGAAGCTCTGCCTTTTGGTAGACTT
AGCCTCGCAGCCAAGTATTGGATAAGCATGCCATACATTTCCCCGGATGG
AGCAATATATCACATTGCCCTGCAGCACTTTGCTAAATTGGATCACAACG
AAGTATGGGATGCATATGTCCTGCTTAATGGTAAAAGTGTATCGCGGAAA
GGTTATGTGTGGATAGCAAGCAATATGTTGAACGATTTGATGTCTGTTGA
GCAGATCCATAATTTTGTAAGCCATGTCAAAAAACAAAAGGAGATAGGAT
ACGCGAAGTGA
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Synonyms
Publications