rna5345, rna5345 (mRNA) Nannochloropsis gaditana

Overview
Namerna5345
Unique Namerna5345
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length566
Alignment locationCM002465.1:766769..768135 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100196g1.3062.mrna
Orig protein idgnl|cribi|Naga_100196g1.3062
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:766769..768135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100196g1gene5166Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5345rna5345-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25338.1cds5332Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5345 ID=rna5345|Name=rna5345|organism=Nannochloropsis gaditana|type=mRNA|length=566bp
ATGTGCCTTCCGATTGTTCAAATACCGTGTGCCATTTTTGTGTGTAGCCG
TGGGCTTCAGGTTGCCACGGGCTGCCCTCCCATCGGGGCGCTAGCTTCCT
ACTTGGATGAAAGCTGTCCTTGCGGAATTCGCCCCGCGGCCTTCCTCACG
CACTATTGTAAACCCAGCGGTGACCTTTCTCGTCACATTTTCCCTTCGAC
AGTCTCGTCAAAGCAAAGGGCATTGTTGTTTTTTTCCTGGGGCCTTGAGC
AGCACTATAACGAGCGCGTGTCCTGCCCCCTCCCAGAGCTGGCATCCCTA
TCTGGCAGGAAATGTCAGGCTCCAGCGGGACGCACAAACAAGTCTCCCAT
CCCCGTCACGCGCGGTCGTATCATCCAGATCGTCCAGGGGTCAAGGCGAA
CAAGGAAGACATTCATACGCCTAAAAATGATCGGGGATGGGGGGGAGCTG
GCGCAGTCGGGTGGGGCGTGTTGGGGGCCTTTGGGTCCTTGGAGAAGGAT
ACAGCGGCACAGGTGGCACGTAAAGGCACACAAGACCCGAACGTGAAGAT
GGTGAAGAACGAGAAG
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protein sequence of rna5345

>rna5345-protein ID=rna5345-protein|Name=rna5345|organism=Nannochloropsis gaditana|type=polypeptide|length=299bp
MVSQLTELDRSLLSQAKREEGAGPGGSVQWRSPLRGSSTSERQERGVQTD
GGAAASELTNGSPSASWTSAASPLPSLPLASSGEAFAEEGLASWGVPASD
GEGKVKHEPEYMAETIKGKGLVGRRVAFREKLRQEKKGALVSSSSRDRHC
AQDGNGRLGANPKGGRRGLKDDIKDALTDLSVPPGGVAASWTSPLRRSGR
EMALMDLGNSSSRHLGRPERTRGCTPRGGHDGRQTRGTVEDVRAHRSQRY
SELETDRIARIMMGHSRSSLSSASLSSSAAFSRRRWGKRRGILEGGLDI
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mRNA from alignment at CM002465.1:766769..768135+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5345 ID=rna5345|Name=rna5345|organism=Nannochloropsis gaditana|type=mRNA|length=1367bp|location=Sequence derived from alignment at CM002465.1:766769..768135+ (Nannochloropsis gaditana)
tggggaggtggacggtgaagaggagggcgtgagcgaggagagacgtggcg
gggggcgggggggggcgaaggagtTTGGGAAGCAGCAACTGGTGCCGGCa
caaagaggggagaagacgaggaggggtgCAGCGAAGGGGGATGGGACGTG
CTGCATACGATGGTCTCCCAGCTGACAGAACTCGACCGAAGCCTCCTCTC
GCAGgccaagagggaagagggcgcaGGCCCGGGGGGGTCGGTGCAGTGGC
GGAGCCCTCTGAGGGGATCATCCACATCcgaaaggcaggagaggggcgtg
CAGACAGACGGCGGGGCCGCGGCCTCGGAGCTCACGAACGGAAGCCCGTC
GGCCTCTTGGACCTCGGCAgcatctcctctcccttcccttcctttggcGT
CGTCAGGGGAGGCGTTCGCGGAAGAAGGGCTGGCGTCCTGGGGGGTTCCG
GCatcggacggggagggaaaagtgaAGCACGAGCCGGAGTACATGGCGGA
AACGATAAAAGGTAAAGGTCTGGTCGGAAGGCGCGTGGCATTCAGAGAAA
AGTTGcgacaagaaaagaagggggcgctggtgtcctcgtcctcccgggAT
AGGCATTGCGCTCAGGATGGAAACGGGCGTTTGGGAGCCAACCCGAAAGG
AGGCCGCCGGGGCCTGAAGGACGATATCAAGGATGCCCTAACCGACCTCA
GTGTCCCTCCTGGTGGGGTCGCGGCCTCTTGGACGAGTCCCCTCCGTCGA
TCCGGGCGGGAGATGGCACTGATGGATTTGGGCAATAGCAGCAGCCGCCA
TCTCGGCAGGCCAGAGAGAACGCGAGGATGCACCCCCCGGGGAGGTCACG
ACGGGCGTCAGACACGAGGGACGGTGGAAGATGTTCGCGCGCACCGTTCA
CAGCGCTATTCGGAGCTTGAGACCGACAGGATTGCCAGGATCATGATGGG
CCACTCGcgctcgtccctctcctcagcCTCTCTGTCCTCAAGTGCGGCTT
TTTctcggaggcggtggggcaaGAGGAGAGGTATCCTAGAAGGGGGTCTG
GATATTTGAATCCACATGATTTTTCTGGCAGTAACTTCGCATAGACATCA
CAGAGAGAGCGAATCGGCATGGCTCCTCGCATACACGTTTGAGACTGTAC
GTAGACGGAAGGCATCCTTCGTGTGAAGACATGTCAGCCCACCACATTGT
GTATTTTAAATGCGTCACCATATTTAGTGAAGAGCAACTCTGTGAAGCAA
CAGCAAAGTATAGGTATGATCCTCAGCTTGAAATGAGCTATTGTCCGTTT
GCTTCTATTGCATCTATTCCGCGGACTATGTTTTTTGATTCTCACAAATT
AATGCAACAAATTGATG
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Coding sequence (CDS) from alignment at CM002465.1:766769..768135+

>rna5345 ID=rna5345|Name=rna5345|organism=Nannochloropsis gaditana|type=CDS|length=900bp|location=Sequence derived from alignment at CM002465.1:766769..768135+ (Nannochloropsis gaditana)
ATGGTCTCCCAGCTGACAGAACTCGACCGAAGCCTCCTCTCGCAGgccaa
gagggaagagggcgcaGGCCCGGGGGGGTCGGTGCAGTGGCGGAGCCCTC
TGAGGGGATCATCCACATCcgaaaggcaggagaggggcgtgCAGACAGAC
GGCGGGGCCGCGGCCTCGGAGCTCACGAACGGAAGCCCGTCGGCCTCTTG
GACCTCGGCAgcatctcctctcccttcccttcctttggcGTCGTCAGGGG
AGGCGTTCGCGGAAGAAGGGCTGGCGTCCTGGGGGGTTCCGGCatcggac
ggggagggaaaagtgaAGCACGAGCCGGAGTACATGGCGGAAACGATAAA
AGGTAAAGGTCTGGTCGGAAGGCGCGTGGCATTCAGAGAAAAGTTGcgac
aagaaaagaagggggcgctggtgtcctcgtcctcccgggATAGGCATTGC
GCTCAGGATGGAAACGGGCGTTTGGGAGCCAACCCGAAAGGAGGCCGCCG
GGGCCTGAAGGACGATATCAAGGATGCCCTAACCGACCTCAGTGTCCCTC
CTGGTGGGGTCGCGGCCTCTTGGACGAGTCCCCTCCGTCGATCCGGGCGG
GAGATGGCACTGATGGATTTGGGCAATAGCAGCAGCCGCCATCTCGGCAG
GCCAGAGAGAACGCGAGGATGCACCCCCCGGGGAGGTCACGACGGGCGTC
AGACACGAGGGACGGTGGAAGATGTTCGCGCGCACCGTTCACAGCGCTAT
TCGGAGCTTGAGACCGACAGGATTGCCAGGATCATGATGGGCCACTCGcg
ctcgtccctctcctcagcCTCTCTGTCCTCAAGTGCGGCTTTTTctcgga
ggcggtggggcaaGAGGAGAGGTATCCTAGAAGGGGGTCTGGATATTTGA
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Synonyms
Publications