rna5343, rna5343 (mRNA) Nannochloropsis gaditana

Overview
Namerna5343
Unique Namerna5343
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length507
Alignment locationCM002465.1:760313..761593 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g143.6665.mrna
Orig protein idgnl|cribi|Naga_100005g143.6665
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:760313..761593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g143gene5164Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5343rna5343-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25371.1cds5330Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5343 ID=rna5343|Name=rna5343|organism=Nannochloropsis gaditana|type=mRNA|length=507bp
ATGTGCTCTTCATCTCTGAATGGCAGAAAGAAATTGTGCTCGACCATTAT
GCGCGCTACGGCCTGGTGCTTTCGCCTCATTCAGTCTCCTACCTATTCTT
TCCTCCATCTTTCTAGGCCCATCTGCGACGTGGGAAGCATGGGTATATTT
GTTTTCACGCCCTACGGGAAGGGGGAAGTAATGGGCACCCGCAACGACGG
AATTGTTATTGTCCAGCTGAGAACTTCGCAAGACAAGCCGTACGTAGGGT
ACTTCCACCTCACGCAAGTAAGGCAGATGGATAGCGAAGCGAACGAGGGC
ATGAAGAGAAGCGTAGGATTTATGACGTTGGACAACGATATGTTGCAGAG
CAATACCAGTCTCGCGGGAGGGGCAGGAGGAGGGGAAGGTGGAAAGAAGA
GTAAGAGGGGGATGGAGGAGAGGGAGGTCTTAGGCGGCATTCCTTTTCAG
GCGCAACAGGGCCGATGCTGCGAACGCCCCTTTGCGGACATGACAAACAT
AGAATGA
back to top

protein sequence of rna5343

>rna5343-protein ID=rna5343-protein|Name=rna5343|organism=Nannochloropsis gaditana|type=polypeptide|length=269bp
MEGRRDRSSSSDGRREMRRGGSGDRRGRERRGEGGSRGSRGRRSSSSSSS
PEAVRERGSGRDREEAGGQGGIEGVKEVCSPADMSFTAAQLADRLVEVYN
QKSSRRFEALAECFAPDVSLRLLKSGATVVKGVQALTASMPADYAKHTAR
VTRRLFITTSLPSEDPSFSMDFYPAGQGPGINAFGKGNVKLDTILVFEVK
SDGRNVINQVWIAPDRDGIASRREDQGAVTELSVLSSKAFPQVAAVLQGR
VKGKISYHMHDYLHMATIS
back to top

mRNA from alignment at CM002465.1:760313..761593-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5343 ID=rna5343|Name=rna5343|organism=Nannochloropsis gaditana|type=mRNA|length=1281bp|location=Sequence derived from alignment at CM002465.1:760313..761593- (Nannochloropsis gaditana)
GCTCAGGCGAAAGAGCAGGAGTGGAAGTAGGGAGAGGAGAAGAGGTAGGG
GGCGAGGAGGGGAAGCAAGCAGAAGTCGGGAGCGAGGGCTGGGTGGGAGA
CAGAGAGGGTCTCCGGGGAGAAGAGAGAGGAGTGAGGGAAGCAGGAGGAG
GGGTAGAAGCGGCAGTAGCGAGGGCGAGAGGGAGCCGAGAACAGAGAGGA
GGAGTGTCAGCGAGGGCAGGATGGAGGGGAGAAGGGACAGAAGCAGTAGT
AGCGATGGCAGGAGGGAAATGAGAAGGGGTGGGAGTGGAGATCGGAGAGG
GAGGGAGAGACGAGGGGAGGGCGGCAGCAGAGGATCGCGAGGGCGACGGT
CTTCCTCCTCCTCGAGCTCCCCTGAGGCCGTGAGGGAACGAGGCAGCGGA
AGGGATCGTGAGGAGGCAGGAGGACAGGGAGGGATAGAAGGGGTGAAGGA
AGTGTGCAGTCCGGCAGACATGTCTTTTACGGCCGCCCAGGTGAGGGAGG
GCGGATGGGGGAGGAGGGAGCGTGGAAGGCAGGGAAGACATTTGGTAGCT
CACGCTCTTCGTGTTCATGACCGTATTCTTCTTTTCTTCTTAGCTTGCCG
ACCGACTGGTGGAGGTGTACAACCAGAAGTCTTCCCGCCGTTTCGAGGCC
CTGGCCGAGTGCTTCGCCCCCGATGTCTCCCTCCGCCTCCTCAAATCAGG
GGCTACGGTCGTGAAGGGCGTGCAGGCGTTGACGGCGTCCATGCCCGCGG
ACTATGCCAAGCACACGGCCCGGGTGACGCGCCGCCTCTTCATCACCACG
AGCCTGCCCTCGGAAGACCCCTCCTTTTCGATGGACTTCTACCCCGCTGG
TCAGGGTCCGGGGATCAATGCTTTTGGGAAAGGCAACGTGAAGCTGGACA
CGATACTTGTGTTTGAAGTCAAGTCGGACGGGCGTAATGTGATAAACCAG
GTCTGGATTGCACCAGATAGGGACGGGATCGCGTCGAGGAGGGAGGACCA
AGGCGCTGTGACGGAGTTGTCAGTCCTGTCATCCAAAGCTTTTCCACAGG
TGGCTGCTGTGCTGCAAGGCCGGGTGAAAGGGAAAATTAGCTATCATATG
CATGACTATCTTCACATGGCAACAATAAGTTGAAAAGTTGAAACATCCCG
AGAATTTGGAGCATCCGAGATGGGGTAGGAAGGAATGGGGGTATTGGAAG
CTCCCTCTTGCGGAAGCAAAAGCAAAGCAAGGTTATCAATAACACAACAG
CACAATCGTTCACCTTTCGAAGCTCTTCCCC
back to top

Coding sequence (CDS) from alignment at CM002465.1:760313..761593-

>rna5343 ID=rna5343|Name=rna5343|organism=Nannochloropsis gaditana|type=CDS|length=1620bp|location=Sequence derived from alignment at CM002465.1:760313..761593- (Nannochloropsis gaditana)
CTTGCCGACCGACTGGTGGAGGTGTACAACCAGAAGTCTTCCCGCCGTTT
CGAGGCCCTGGCCGAGTGCTTCGCCCCCGATGTCTCCCTCCGCCTCCTCA
AATCAGGGGCTACGGTCGTGAAGGGCGTGCAGGCGTTGACGGCGTCCATG
CCCGCGGACTATGCCAAGCACACGGCCCGGGTGACGCGCCGCCTCTTCAT
CACCACGAGCCTGCCCTCGGAAGACCCCTCCTTTTCGATGGACTTCTACC
CCGCTGGTCAGGGTCCGGGGATCAATGCTTTTGGGAAAGGCAACGTGAAG
CTGGACACGATACTTGTGTTTGAAGTCAAGTCGGACGGGCGTAATGTGAT
AAACCAGGTCTGGATTGCACCAGATAGGGACGGGATCGCGTCGAGGAGGG
AGGACCAAGGCGCTGTGACGGAGTTGTCAGTCCTGTCATCCAAAGCTTTT
CCACAGGTGGCTGCTGTGCTGCAAGGCCGGGTGAAAGGGAAAATTAGCTA
TCATATGCATGACTATCTTCACATGGCAACAATAAGTTGAATGGAGGGGA
GAAGGGACAGAAGCAGTAGTAGCGATGGCAGGAGGGAAATGAGAAGGGGT
GGGAGTGGAGATCGGAGAGGGAGGGAGAGACGAGGGGAGGGCGGCAGCAG
AGGATCGCGAGGGCGACGGTCTTCCTCCTCCTCGAGCTCCCCTGAGGCCG
TGAGGGAACGAGGCAGCGGAAGGGATCGTGAGGAGGCAGGAGGACAGGGA
GGGATAGAAGGGGTGAAGGAAGTGTGCAGTCCGGCAGACATGTCTTTTAC
GGCCGCCCAGCTTGCCGACCGACTGGTGGAGGTGTACAACCAGAAGTCTT
CCCGCCGTTTCGAGGCCCTGGCCGAGTGCTTCGCCCCCGATGTCTCCCTC
CGCCTCCTCAAATCAGGGGCTACGGTCGTGAAGGGCGTGCAGGCGTTGAC
GGCGTCCATGCCCGCGGACTATGCCAAGCACACGGCCCGGGTGACGCGCC
GCCTCTTCATCACCACGAGCCTGCCCTCGGAAGACCCCTCCTTTTCGATG
GACTTCTACCCCGCTGGTCAGGGTCCGGGGATCAATGCTTTTGGGAAAGG
CAACGTGAAGCTGGACACGATACTTGTGTTTGAAGTCAAGTCGGACGGGC
GTAATGTGATAAACCAGGTCTGGATTGCACCAGATAGGGACGGGATCGCG
TCGAGGAGGGAGGACCAAGGCGCTGTGACGGAGTTGTCAGTCCTGTCATC
CAAAGCTTTTCCACAGGTGGCTGCTGTGCTGCAAGGCCGGGTGAAAGGGA
AAATTAGCTATCATATGCATGACTATCTTCACATGGCAACAATAAGTTGA
ATGGAGGGGAGAAGGGACAGAAGCAGTAGTAGCGATGGCAGGAGGGAAAT
GAGAAGGGGTGGGAGTGGAGATCGGAGAGGGAGGGAGAGACGAGGGGAGG
GCGGCAGCAGAGGATCGCGAGGGCGACGGTCTTCCTCCTCCTCGAGCTCC
CCTGAGGCCGTGAGGGAACGAGGCAGCGGAAGGGATCGTGAGGAGGCAGG
AGGACAGGGAGGGATAGAAGGGGTGAAGGAAGTGTGCAGTCCGGCAGACA
TGTCTTTTACGGCCGCCCAG
back to top
Synonyms
Publications