rna5342, rna5342 (mRNA) Nannochloropsis gaditana

Overview
Namerna5342
Unique Namerna5342
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length474
Alignment locationCM002465.1:759165..759671 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g142.6740.mrna
Orig protein idgnl|cribi|Naga_100005g142.6740
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:759165..759671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g142gene5163Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25446.1cds5329Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5342rna5342-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5342 ID=rna5342|Name=rna5342|organism=Nannochloropsis gaditana|type=mRNA|length=474bp
ATGTGGAGGGATGACTGTCTGTCCTTATGGTGCCCCCATAGGCGTATCCC
AGACAGCACGCGTAGGCCCCCGGGGGGCTCGTCGGGTGTGGCGGAGCGGA
TGCCGCGGGTCGTGTCGTGTGCCGCGTCAACAGGTCTGGCATGGGTGTGC
ATACATGTAAATGGAGGCAGGGCGGTGGAAGGTAATGAGGGGGAGGGCCC
GCCCGGCACTGGGAGACCGGCTCAGGTCACAGCACACTGGAATGGCGCCT
GCAGGATGGACCCATCCGGCTCCTGTCGGGGAACGCTGTGTGCTGACGGC
ATTGTAGCATACGCCATAAAAAGTGAGAAATTAATGACCGAAAGCTCAAC
AAGAACATCAAGAGCCAGCCGGGTTGGCGGTTTCCCGAAACGAGGACCGT
CAGGACAAGCCCCTTGCTCTTCCAAGAACGGGATTAGAAATGAGCGCAAG
TGCAGCATAGATGTTCTCGTTTGA
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protein sequence of rna5342

>rna5342-protein ID=rna5342-protein|Name=rna5342|organism=Nannochloropsis gaditana|type=polypeptide|length=168bp
MCSSSLNGRKKLCSTIMRATAWCFRLIQSPTYSFLHLSRPICDVGSMGIF
VFTPYGKGEVMGTRNDGIVIVQLRTSQDKPYVGYFHLTQVRQMDSEANEG
MKRSVGFMTLDNDMLQSNTSLAGGAGGGEGGKKSKRGMEEREVLGGIPFQ
AQQGRCCERPFADMTNIE
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mRNA from alignment at CM002465.1:759165..759671-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5342 ID=rna5342|Name=rna5342|organism=Nannochloropsis gaditana|type=mRNA|length=507bp|location=Sequence derived from alignment at CM002465.1:759165..759671- (Nannochloropsis gaditana)
ATGTGCTCTTCATCTCTGAATGGCAGAAAGAAATTGTGCTCGACCATTAT
GCGCGCTACGGCCTGGTGCTTTCGCCTCATTCAGTCTCCTACCTATTCTT
TCCTCCATCTTTCTAGGCCCATCTGCGACGTGGGAAGCATGGGTATATTT
GTTTTCACGCCCTACGGGAAGGGGGAAGTAATGGGCACCCGCAACGACGG
AATTGTTATTGTCCAGCTGAGAACTTCGCAAGACAAGCCGTACGTAGGGT
ACTTCCACCTCACGCAAGTAAGGCAGATGGATAGCGAAGCGAACGAGGGC
ATGAAGAGAAGCGTAGGATTTATGACGTTGGACAACGATATGTTGCAGAG
CAATACCAGTCTCGCGGGAGGGGCAGGAGGAGGGGAAGGTGGAAAGAAGA
GTAAGAGGGGGATGGAGGAGAGGGAGGTCTTAGGCGGCATTCCTTTTCAG
GCGCAACAGGGCCGATGCTGCGAACGCCCCTTTGCGGACATGACAAACAT
AGAATGA
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Coding sequence (CDS) from alignment at CM002465.1:759165..759671-

>rna5342 ID=rna5342|Name=rna5342|organism=Nannochloropsis gaditana|type=CDS|length=507bp|location=Sequence derived from alignment at CM002465.1:759165..759671- (Nannochloropsis gaditana)
ATGTGCTCTTCATCTCTGAATGGCAGAAAGAAATTGTGCTCGACCATTAT
GCGCGCTACGGCCTGGTGCTTTCGCCTCATTCAGTCTCCTACCTATTCTT
TCCTCCATCTTTCTAGGCCCATCTGCGACGTGGGAAGCATGGGTATATTT
GTTTTCACGCCCTACGGGAAGGGGGAAGTAATGGGCACCCGCAACGACGG
AATTGTTATTGTCCAGCTGAGAACTTCGCAAGACAAGCCGTACGTAGGGT
ACTTCCACCTCACGCAAGTAAGGCAGATGGATAGCGAAGCGAACGAGGGC
ATGAAGAGAAGCGTAGGATTTATGACGTTGGACAACGATATGTTGCAGAG
CAATACCAGTCTCGCGGGAGGGGCAGGAGGAGGGGAAGGTGGAAAGAAGA
GTAAGAGGGGGATGGAGGAGAGGGAGGTCTTAGGCGGCATTCCTTTTCAG
GCGCAACAGGGCCGATGCTGCGAACGCCCCTTTGCGGACATGACAAACAT
AGAATGA
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Synonyms
Publications