rna5341, rna5341 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5341
Unique Name	rna5341
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1159
Alignment location	CM002465.1:758478..759023 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100005g141.6683.mrna
Orig protein id	gnl\|cribi\|Naga_100005g141.6683
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:758478..759023 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g141	gene5162	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5341	rna5341-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25389.1	cds5328	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:758478..759023-
coding sequence from alignment at CM002465.1:758478..759023-

mRNA sequence

>rna5341 ID=rna5341|Name=rna5341|organism=Nannochloropsis gaditana|type=mRNA|length=1159bp
ATTGATATCACACCAGACTTTTATCATCACAGTGACATCACATCACACGG
ATGTCTCATCACAAGCATGTCACTCTGCACTGACACCGATCACATTTACT
CGTGGACCATAATATCGTCTCAGACCTCTGGGCGCATTGGACTTCGCGTT
GGGTGACATTTTCGTTCACTCATCCTCACCCCCACGTCTTCTTCCCGCAG
ATTATCGCAAATATAGCTCCTATGCTTTCTCCACAGTGCACCATCACTTC
GCAGTAAAGCAATAGCGGTAGCATGTCACCAGCTCGTCAAGACTCGCGAT
CACCAGGGACACCGACGCCCTCCACACGTCGTTCGCGATGGTACGCATTT
GCGTGTGCCGTGGCGTATGAACTTCGTCCCTTTACACCGCCCACGGCGCA
CGATCTGCTCCACTACATCCGGTCTAGCAGACAAGTTGGGAGAGATATTT
GTGAGGAAGCACTTCAATTTTCGAAGAATGTTGCGTGGCCCCTGCTTTGC
CGCGTGCTTGGGATCCTCCTCTCCTGGCGCTACGCCATCCCTCTGACCGC
TTTCGCCGCTGCTTTTTACTTGGCCGTTACTGCGGAATTCGGGCTCGTGT
TTTTGATCCTCTCATCCCTTGTTTTGATATGGACGGTGGGCCTGGGTGAT
GACGCAACCACCAACAATCAGGCCGGGGAGCGGCTCAGTCCCTGGAGCGT
TTTCAATCGAGGGATGACCACCATGATGGGGACCATCAATCCCGAGCAAT
TCGACGCAGAACTACGCCACTATCGGGTGGAGGGAGAGGGCTCTCATGGC
TCGGAAGAGAGAAGGCCAGAAATGGGAACTCAGGAGCCGGGAGGAGGAGA
TGGAGCGGGAAGAGACGGGGAGGGTAGGGAGGGGGCCGATGGAGGGGCAG
GCCGCCCGGGAGAGGGCGGGCGCTCGCGGAAGAGTGGGAAAAAGGCGCGC
AGAAGCTTTGATAGAGACAAGCGGCGAGGGCAAGGGAGAGGGGGAGGGGG
GGAGGAGGAGTGGGAGGAGGACTGGGTATCTGACGACGATAGAGAGTGAG
CATGCGGGCTGTACATGTAGGCATGATGATTTAGCATGTAAATTAAAGGA
GCAGAGGAACCCGGGTCAGCTTCAAACGAGAACATCTATGCTGCACTTGC
GCTCATTTC

protein sequence of rna5341

>rna5341-protein ID=rna5341-protein|Name=rna5341|organism=Nannochloropsis gaditana|type=polypeptide|length=157bp
MWRDDCLSLWCPHRRIPDSTRRPPGGSSGVAERMPRVVSCAASTGLAWVC
IHVNGGRAVEGNEGEGPPGTGRPAQVTAHWNGACRMDPSGSCRGTLCADG
IVAYAIKSEKLMTESSTRTSRASRVGGFPKRGPSGQAPCSSKNGIRNERK
CSIDVLV

mRNA from alignment at CM002465.1:758478..759023-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5341 ID=rna5341|Name=rna5341|organism=Nannochloropsis gaditana|type=mRNA|length=546bp|location=Sequence derived from alignment at CM002465.1:758478..759023- (Nannochloropsis gaditana)
ATGTGGAGGGATGACTGTCTGTCCTTATGGTGCCCCCATAGGCGTATCCC
AGACAGCACGCGTAGGCCCCCGGGGGGCTCGTCGGGTGTGGCGGAGCGGA
TGCCGCGGGTCGTGTCGTGTGCCGCGTCAACAGGTCTGGCATGGGTGTGC
ATACATGTAAGTGTGTCAAATTGAAAGCAGTGGATGAATGAGTGGACACA
AGGAGGTATGGGACGAATCGGGCGGGGGACAGATGGAGGCAGGGCGGTGG
AAGGTAATGAGGGGGAGGGCCCGCCCGGCACTGGGAGACCGGCTCAGGTC
ACAGCACACTGGAATGGCGCCTGCAGGATGGACCCATCCGGCTCCTGTCG
GGGAACGCTGTGTGCTGACGGCATTGTAGCATACGCCATAAAAAGTGAGA
AATTAATGACCGAAAGCTCAACAAGAACATCAAGAGCCAGCCGGGTTGGC
GGTTTCCCGAAACGAGGACCGTCAGGACAAGCCCCTTGCTCTTCCAAGAA
CGGGATTAGAAATGAGCGCAAGTGCAGCATAGATGTTCTCGTTTGA

Coding sequence (CDS) from alignment at CM002465.1:758478..759023-

>rna5341 ID=rna5341|Name=rna5341|organism=Nannochloropsis gaditana|type=CDS|length=948bp|location=Sequence derived from alignment at CM002465.1:758478..759023- (Nannochloropsis gaditana)
ATGGAGGCAGGGCGGTGGAAGGTAATGAGGGGGAGGGCCCGCCCGGCACT
GGGAGACCGGCTCAGGTCACAGCACACTGGAATGGCGCCTGCAGGATGGA
CCCATCCGGCTCCTGTCGGGGAACGCTGTGTGCTGACGGCATTGTAGCAT
ACGCCATAAAAAGTGAGAAATTAATGACCGAAAGCTCAACAAGAACATCA
AGAGCCAGCCGGGTTGGCGGTTTCCCGAAACGAGGACCGTCAGGACAAGC
CCCTTGCTCTTCCAAGAACGGGATTAGAAATGAGCGCAAGTGCAGCATAG
ATGTTCTCGTTTGAATGTGGAGGGATGACTGTCTGTCCTTATGGTGCCCC
CATAGGCGTATCCCAGACAGCACGCGTAGGCCCCCGGGGGGCTCGTCGGG
TGTGGCGGAGCGGATGCCGCGGGTCGTGTCGTGTGCCGCGTCAACAGGTC
TGGCATGGGTGTGCATACATGTAAATGGAGGCAGGGCGGTGGAAGGTAAT
GAGGGGGAGGGCCCGCCCGGCACTGGGAGACCGGCTCAGGTCACAGCACA
CTGGAATGGCGCCTGCAGGATGGACCCATCCGGCTCCTGTCGGGGAACGC
TGTGTGCTGACGGCATTGTAGCATACGCCATAAAAAGTGAGAAATTAATG
ACCGAAAGCTCAACAAGAACATCAAGAGCCAGCCGGGTTGGCGGTTTCCC
GAAACGAGGACCGTCAGGACAAGCCCCTTGCTCTTCCAAGAACGGGATTA
GAAATGAGCGCAAGTGCAGCATAGATGTTCTCGTTTGAATGTGGAGGGAT
GACTGTCTGTCCTTATGGTGCCCCCATAGGCGTATCCCAGACAGCACGCG
TAGGCCCCCGGGGGGCTCGTCGGGTGTGGCGGAGCGGATGCCGCGGGTCG
TGTCGTGTGCCGCGTCAACAGGTCTGGCATGGGTGTGCATACATGTAA

Synonyms

Publications