rna5337, rna5337 (mRNA) Nannochloropsis gaditana

Overview
Namerna5337
Unique Namerna5337
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1650
Alignment locationCM002465.1:747805..749627 -

Link to JBrowse

Properties
Property NameValue
Productshort-chain dehydrogenase reductase sdr
Orig transcript idgnl|cribi|Naga_100005g136.6750.mrna
Orig protein idgnl|cribi|Naga_100005g136.6750
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:747805..749627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g136gene5158Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25456.1cds5324Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5337rna5337-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5337 ID=rna5337|Name=rna5337|organism=Nannochloropsis gaditana|type=mRNA|length=1650bp
CCTGGTGGTAACTTGGTAAGATGCGTTGACCATGTCTTCCTTTTGGTCTC
CCGATTACGTTTCACACTATCACTGTACCCACATCGTTATTCGAATTGTT
TTACAGGGACGCACGTGGGTTTCGAATGTGGACTCTTTGTGGAAAATGTC
GTATGATCAAGCTGCCCGCATCGTTGCTGCCTTCAACTTTCATGTTCGCC
GCAGCTTCCATAGAACCCGCACAACTATGGTCGTGGCAAAGGGCCACAAA
GCCCATTTTGGGCGACAATTTTCACAGAAACTACTCTATCCGCCCCCAAA
AAGTGCCATCCGCGCCGGTCCCCAACTGTATAGTCCTCCACATAACACCT
CCACGCTCTACCCTCGAAGACCGGTTACAAGAAGAGGACTTCCTGGACGA
GGCCTGCGCCTTGGCTCAGACCCTGGGGTATGCGGTGCCTGTACGTGAGA
TACTGCGGCTCCGGGCGATCCACCCCAAGACCTTTATTGGCAAAGGAAAG
GTGGTGGAACTCAGGGGGTTGTTGCGTGCCACGGATGCGATTCTCTTCAT
AAACACGCCCCGACTGACGGCATTACAACAAAGGAACCTGAAAGAATTAT
GTCAAACAGAGGGCGTCAAAGATAGAATCAGCGTTATTTTGGACATTTTT
GGCCAACGTGCCCGGACAATGGAAGCTAAACTGCAGGTGGAGCTCGCGCA
GTGCAAATACGCCCTTTCTCATTTGGTGCGGGGGGCCTCTGCCGGATATG
AGCAGCAACGTGGGGCGTCAGGGACAGGGTTCATGGCCGGCGGAGGAGAA
AAGGCGCTAGAGCTCCGCCGCAGACAGCTTCGAGAGCAAAGCAAAGTGCT
GCAGCACAAGCTCAAAACGGTGGAGAAGCGGCGGATGGAGCAGCGGAAGC
ACCGGCGACAGCCGACTGTCAGTTTGCTGGGGTACACGAACGTGGGAAAA
TCCTCTCTCTTGAATGCACTCACGCACTCACATGCCGTCTCTGTGGAAGA
TCGGCCCTTTGAGACCCTCGACACCACCACACGGGCCCTCTTCCTCCCCT
CCGTGGGCGCCTCTGCTCTCCTCACTGACACCGTCGGCTTCATCCGTCAG
CTGCCCCTTGAGCTCGTCGCCGCCTTTCGCGCCACCCTGGAGGAGGCGGT
ATCTGCTGACCTTTTACTGCATGTGCGGGACGCTAGCACCCTTGGCACGC
CCCTGTTTGCCGAGCAGTACGCCTCAGTGGACAAGATCTTGAGGGACGTG
GGGACTCCGGAGCATTTGAAGCACTCCGTGGTGGAAGTCTGGAACAAGGT
AGACCTCCTGACGAATAAGCAACGGGACCAGATGGCCCGCGTCCTTGCAG
GAGCGAAGCGGGAGGCATCCAGCCCCGACGTGGTCCTGGTCTCGGCCCAG
ACAAAGGAAGGAATGAGGGAGCTGGTGCGGATGATTGGTGACAGATTGGT
GGAGGGCGGCTTCTTGCAGCCGGCGGAGACGAGGGGTGCAGATAAAAAGT
CTAGCTGTGAGAAGGATGGCAAGAAACACATGTGCTACAGCGATGAGGAG
GGGAAACAAGAGGTATTGTCATCGCGAACAGAGAATATGTCAAATAAAAA
GGCTGTAAATGAAGTAGATGTATAAAGTAATGTATCCAAAGATGTTACGA
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protein sequence of rna5337

>rna5337-protein ID=rna5337-protein|Name=rna5337|organism=Nannochloropsis gaditana|type=polypeptide|length=510bp
MPPRQQFQAFKDDFFLKLSQNNILRPWLSKFGLPTPVLLDRGTRNHFAVP
PLAGCSVAVIGKQSGDSSHAHQTIKILTQLMSTKLGASVECQENCNKVLV
DATWVRSPLDVSSLALHSLRSLAARKLKHGRIVILSSYTPSDILSASLSS
GLASLVRSLAKEMGGTGTTVNMVVVRVAPFTLSSQTFASIAWPLAFLLLH
ESAFISGQKITVELGAGSSGDFCAWLESLTGAANNDTSRTLSPAAEGKLL
IGKTCLVTGCSRGIGAAIATRLAAEGARVLGVDVPGACQRLTALMEEVGG
TAFSQDLAEEGAERRLRDFVLAEAPAGKLDCLIHNAGVTRDRTLRRMTAE
EFEQVVKVNLEAVLRINEAFGLPSHTEGGTKSQLGPVLLNPLGRIVLLSS
INGIAGAFGQTNYSFTKAALSGYAHALATVLSTRGPPGITINAIAPGFIE
TDMTRRMPTLGKFLGRRANALSQGGYPEDIAAATAFLCCEGSGGVSGQTL
RVCGLNAVGK
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mRNA from alignment at CM002465.1:747805..749627-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5337 ID=rna5337|Name=rna5337|organism=Nannochloropsis gaditana|type=mRNA|length=1823bp|location=Sequence derived from alignment at CM002465.1:747805..749627- (Nannochloropsis gaditana)
CTTGCACGTTGTGACGGCAACTGTGTTATTTTTCCAAGACATTTCATGCA
GAGCCGATTTCTTTGAACGGCAAACATCCTTTTAGTCCGCTTATCGTCCC
TGTCCTTTAAGCAACACCAGGAGACGGCTGCCGGTCATGCCACCAAGACA
ACAATTTCAGGCATTTAAGGACGATTTTTTCCTAAAACTATCCCAGAATA
ATATTTTGAGGCCATGGTTGTCAAAGTTTGGACTTCCCACTCCTGTGCTC
TTGGATCGAGGCACTCGAAACCATTTTGCCGTGCCACCTCTAGCGGGCTG
CTCAGTTGCTGTAATTGGAAAGCAGAGTGGTGACAGTTCACATGCGCATC
AGACTATCAAAATATTGACTCAGCTCATGTCCACAAAATTGGGAGCGAGT
GTGGAGTGTCAAGAAAACTGCAACAAGGTTTTGGTCGATGCCACGTGGGT
ACGATCCCCCTTAGATGTCTCGAGCTTAGCGCTCCATTCCTTGCGATCTC
TTGCCGCTCGCAAGCTCAAACATGGACGGATCGTGATACTCTCTTCCTAT
ACACCTAGTGATATTTTATCTGCATCCCTTTCTTCAGGTCTGGCGTCGTT
AGTGCGGTCATTGGCGAAAGAGATGGGAGGGACGGGCACCACAGTTAATA
TGGTCGTTGTACGGGTTGCTCCATTTACCCTTTCGTCCCAAACTTTCGCT
TCCATTGCCTGGCCTCTGGCATTTCTACTTCTTCATGAATCTGCCTTTAT
TTCTGGCCAAAAAATTACTGTAGAGCTGGGTGCTGGCTCCTCAGGCGACT
TCTGTGCATGGCTCGAGAGCCTAACCGGGGCTGCCAATAATGACACCTCC
CGCACTCTTTCGCCCGCAGCAGAGGGCAAGTTATTAATTGGAAAAACCTG
TCTAGTGACTGGATGTAGCCGCGGCATTGGTGCAGCGATCGCTACGAGAC
TCGCCGCAGAGGGTGCCCGAGTGTTAGGGGTGGATGTACCAGGGGCATGT
CAGAGACTGACAGCATTGATGGAGGAAGTAGGAGGGACAGCCTTTTCGCA
AGATTTGGCAGAAGAAGGGGCAGAGAGACGGTTGCGGGATTTTGTGCTCG
CAGAGGCCCCTGCTGGCAAGCTGGACTGCTTGATACACAATGCGGGGGTG
ACAAGGGATAGGACCCTGCGACGAATGACTGCGGAGGAGTTTGAACAGGT
GGTCAAGGTGAACCTGGAGGCCGTGCTACGGATTAACGAAGCCTTTGGTC
TCCCTTCCCATACAGAGGGCGGAACGAAAAGCCAATTAGGACCTGTCTTG
CTTAATCCTCTGGGTCGCATTGTTCTCCTCTCGTCCATCAACGGTATCGC
AGGCGCTTTTGGCCAGACCAATTACAGCTTCACCAAGGCGGCTCTTAGTG
GATATGCCCACGCGCTTGCGACTGTCTTGTCGACTCGTGGTCCTCCAGGC
ATAACGATCAACGCCATCGCGCCTGGCTTTATCGAGACGGATATGACGCG
GAGGATGCCAACGCTTGGCAAGTTCCTGGGACGGCGGGCGAACGCCTTGT
CCCAAGGAGGATACCCGGAGGACATAGCCGCAGCGACAGCTTTTTTGTGT
TGCGAGGGGAGTGGAGGCGTCTCGGGGCAGACGTTACGTGTCTGTGGCCT
GAACGCCGTGGGGAAATGAGGAAAGTCTGGTCATCAGAGAGAGGAGCTAA
TGGACTTCGGGCATCTGTGGGGATGGACCGCGTCTGCTCATGCTCCAGTG
CAGTGTCGCGCATCCACCGTAACGAGGGTGGATAGGAAAAAAGGGTAATC
AGTGGATGAAAAGCGGGCAAAAA
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Coding sequence (CDS) from alignment at CM002465.1:747805..749627-

>rna5337 ID=rna5337|Name=rna5337|organism=Nannochloropsis gaditana|type=CDS|length=1533bp|location=Sequence derived from alignment at CM002465.1:747805..749627- (Nannochloropsis gaditana)
ATGCCACCAAGACAACAATTTCAGGCATTTAAGGACGATTTTTTCCTAAA
ACTATCCCAGAATAATATTTTGAGGCCATGGTTGTCAAAGTTTGGACTTC
CCACTCCTGTGCTCTTGGATCGAGGCACTCGAAACCATTTTGCCGTGCCA
CCTCTAGCGGGCTGCTCAGTTGCTGTAATTGGAAAGCAGAGTGGTGACAG
TTCACATGCGCATCAGACTATCAAAATATTGACTCAGCTCATGTCCACAA
AATTGGGAGCGAGTGTGGAGTGTCAAGAAAACTGCAACAAGGTTTTGGTC
GATGCCACGTGGGTACGATCCCCCTTAGATGTCTCGAGCTTAGCGCTCCA
TTCCTTGCGATCTCTTGCCGCTCGCAAGCTCAAACATGGACGGATCGTGA
TACTCTCTTCCTATACACCTAGTGATATTTTATCTGCATCCCTTTCTTCA
GGTCTGGCGTCGTTAGTGCGGTCATTGGCGAAAGAGATGGGAGGGACGGG
CACCACAGTTAATATGGTCGTTGTACGGGTTGCTCCATTTACCCTTTCGT
CCCAAACTTTCGCTTCCATTGCCTGGCCTCTGGCATTTCTACTTCTTCAT
GAATCTGCCTTTATTTCTGGCCAAAAAATTACTGTAGAGCTGGGTGCTGG
CTCCTCAGGCGACTTCTGTGCATGGCTCGAGAGCCTAACCGGGGCTGCCA
ATAATGACACCTCCCGCACTCTTTCGCCCGCAGCAGAGGGCAAGTTATTA
ATTGGAAAAACCTGTCTAGTGACTGGATGTAGCCGCGGCATTGGTGCAGC
GATCGCTACGAGACTCGCCGCAGAGGGTGCCCGAGTGTTAGGGGTGGATG
TACCAGGGGCATGTCAGAGACTGACAGCATTGATGGAGGAAGTAGGAGGG
ACAGCCTTTTCGCAAGATTTGGCAGAAGAAGGGGCAGAGAGACGGTTGCG
GGATTTTGTGCTCGCAGAGGCCCCTGCTGGCAAGCTGGACTGCTTGATAC
ACAATGCGGGGGTGACAAGGGATAGGACCCTGCGACGAATGACTGCGGAG
GAGTTTGAACAGGTGGTCAAGGTGAACCTGGAGGCCGTGCTACGGATTAA
CGAAGCCTTTGGTCTCCCTTCCCATACAGAGGGCGGAACGAAAAGCCAAT
TAGGACCTGTCTTGCTTAATCCTCTGGGTCGCATTGTTCTCCTCTCGTCC
ATCAACGGTATCGCAGGCGCTTTTGGCCAGACCAATTACAGCTTCACCAA
GGCGGCTCTTAGTGGATATGCCCACGCGCTTGCGACTGTCTTGTCGACTC
GTGGTCCTCCAGGCATAACGATCAACGCCATCGCGCCTGGCTTTATCGAG
ACGGATATGACGCGGAGGATGCCAACGCTTGGCAAGTTCCTGGGACGGCG
GGCGAACGCCTTGTCCCAAGGAGGATACCCGGAGGACATAGCCGCAGCGA
CAGCTTTTTTGTGTTGCGAGGGGAGTGGAGGCGTCTCGGGGCAGACGTTA
CGTGTCTGTGGCCTGAACGCCGTGGGGAAATGA
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Synonyms
Publications