rna5328, rna5328 (mRNA) Nannochloropsis gaditana

Overview
Namerna5328
Unique Namerna5328
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1539
Alignment locationCM002465.1:728393..730482 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g127.6724.mrna
Orig protein idgnl|cribi|Naga_100005g127.6724
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:728393..730482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g127gene5149Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25430.1cds5315Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5328rna5328-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5328 ID=rna5328|Name=rna5328|organism=Nannochloropsis gaditana|type=mRNA|length=1539bp
GTACGCTCCGAGGGCAATCAACACACACATTTTACTCTGATTTAACCCAC
CTCTCGCGTATTTGCAGCGCGGATTGGATTCAATAGGTTGATCCATCATA
TTGTACAACACGCAAAATCCTTCCTCACGCACGCAGAGGCTCATTGCAGA
GGAAGAGAGCAGGCGGCACTGCCTGAAGGGGATAGGCACGGCATCAGAAT
TTTGTCAGGAGTTACCGAAGGCTGTAATTAAAATATTTGATAATGCCTAC
TCGGCACATAGAATAGTTAGAAAATTGAGAATGTCAAACGCCAAAGACAT
CAGCAGAACGAGAAAAAGGAAGCGGCCCCATGAGAAAACTTGGCTGCAAG
AATTTATCCTAGGGGGGACATCGACAAGCATCGCATGCCTTATCAGCAAC
CCATTTGACGTTCTTAAGGTGCGCATGCAACTGCAAGGCGAACTCAAGAG
CAAAGGTTCTTATCAGGTCCACTACCGCAACATTTTCACAGCCGCCTGGA
CAATCATACGCGTCGAAGGAATTTTCGCTTTGCAGAAAGGATTAGGACCT
GCAATCCTCTATCAATTTTGTATGAACGGCGTGCGACTTGGCACCTTCCA
AACGCTAGTGAATATGGGCCAAAAAGCGGACCGCGAACGGGAGGAAGCAA
GGAGACGAGGGTCGGCGTCTCCCCGCAGCATGGACGGTCCTCGGGACGCT
AGCGACAGCCTTCCTGCGTCCTCCTCGCCCTCTAACAATGTTGCCCGATC
GGCCGTGGCGGGTGCCTTGGGAGGGGCCCTCGGGGGGATTGTCGCGAGCC
CTTTGTACCTGGTCAAGACCCAACTCCAGTCTCGCGCCCTGCGAGCCATC
GCCGTTGGGCACCAGCACGAGCACACCTCAACATTCCAAGCGCTGCGAAA
GATCTATGGAGAGCAGGGGCTTCGAGGCCTCTGGCGGGGCGTGGAGGGCG
CAGTGCCTCGCTTGACGCTGGGTTCGGCCCTCCAGCTCTCTACCTTCTCC
TACATGAAGGAGGCCGTGCGACGCTCCGGGCACGTGGAGGAGCTCTGGGT
GCCTGTGGTGGCCTCCTTGCTTTCGAGTGTCAATATTATCATCTTCATGG
AGCCTCTGGACGTGGTGCGGACCCGCCTGTACAATCAGCCCACCGACGCG
CGGGGCCGAGGCCTGTACTACCGCGGCTTCTGGGATTGCTTTCGGAAGGT
CATCCAGACCGAAGGCTTCTTGCACGGGATGTACAAGGGCGCAGGGGCTG
CATATTTCCGCATGGCCCCGCAGGCGATCATGGGTTTGAGCTTCTGGGAC
TCGATTCGAAGGGCGTGGTACGGCACAGGGGCAGGCGATGAGGGGGGGGA
CGGGGGGGAAGAATGAACGGGTGATGGGATGACATGATTCTTGGGATAGT
GCGCATAAAATGTGAGATGTAATTACTGGACCAGGACAAGAATCAAGAGG
AATGAACGATTAACGCTGCGCCTCGGTATTGCCGTGGACTGCAGGCGCTC
GAGACACCTTGCACAACGTGCTCTTTCGTCCGACTTTCC
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protein sequence of rna5328

>rna5328-protein ID=rna5328-protein|Name=rna5328|organism=Nannochloropsis gaditana|type=polypeptide|length=435bp
MLAALRQEVALALPRRYHPPPLSFWTSRMQTKQMRLKIFNITTSLISERY
SLSLAASAHISGTGVSFPLVKSTIVSSPPPGTTKRGGCTMAASTSSASGE
EEDVFEIREWVDDEGKEVSSEVYSVREAARQVKKLDLLGVLEKAAAANKK
ASTAAAIATEVKEAERAAFGNNQTPTSNRDVNNRVAADSESSNASSNGCK
TGASLPSSTQQLLDDQDWEGIKERASEIQSQQFKSIRGELEAEADSRQGR
NKLEGSGWGKGFFLSTGRERIGGNSSGTESTTKPTKSCIKSPVTKTARVK
KHVSFDLHSAPASRESLDFLPRRRIPCEPEVEEEKDEDKRLEAQRRQAWS
GTGFQGKLPETSETKPAGKAFSGLVTEVDGCGGPRNGGGERIGPELTSRR
SSSACSMTDRSGIAPPGMSRFKARALGVEWDGGSA
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mRNA from alignment at CM002465.1:728393..730482-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5328 ID=rna5328|Name=rna5328|organism=Nannochloropsis gaditana|type=mRNA|length=2090bp|location=Sequence derived from alignment at CM002465.1:728393..730482- (Nannochloropsis gaditana)
ACGTGAGAACCTCGACATGGAAGGGCTCCCGGAGCCGGCGATGAGGAGGT
CGCACTCTACCTGGTTCTGGGAATTTGTCGTGCAAATAGCAAAACAAATC
CACATTTAAGCTGCCCACGCAAACTATACTCTTCTGAATTTTGCTATCCA
TGGTAAATCTGGCGTGTGCCTGCTAGAGAGGTTTCAAGTCAGTGTGTGAA
GATGCTCGCTGCCTTGCGTCAGGAGGTTGCACTAGCACTTCCTCGACGAT
ATCATCCCCCACCCCTTTCTTTTTGGACGTCTCGAATGCAGACAAAGCAA
ATGCGGCTCAAAATATTTAATATTACAACATCACTCATATCCGAACGCTA
CTCTTTGTCCCTTGCAGCAAGCGCACACATATCTGGGACTGGGGTTTCCT
TCCCCCTGGTTAAATCTACCATCGTATCATCGCCGCCTCCGGGGACCACA
AAAAGGGGCGGGTGCACGATGGCAGCAAGCACTTCATCCGCGTCCGGTGA
AGAGGAGGATGTGTTTGAGATCAGAGAGTGGGTGGATGACGAAGGGAAAG
AGGTTTCTTCCGAGGTGTACAGTGTTCGTGAAGCTGCCAGACAGGTGAAG
AAGCTTGACTTGTTGGGTGTTTTGGAAAAGGCAGCCGCGGCGAACAAGAA
AGCGTCTACGGCCGCAGCAATTGCAACAGAAGTAAAGGAGGCGGAGCGAG
CTGCTTTTGGCAATAATCAGACGCCAACATCAAATCGGGATGTCAATAAT
CGCGTCGCTGCAGACTCTGAAAGCAGCAACGCGTCTTCAAATGGCTGCAA
AACGGGGGCATCTTTACCTTCTTCGACACAACAGCTTCTGGACGACCAAG
ATTGGGAAGGTATCAAGGAAAGGGCGAGCGAGATACAATCGCAACAGTTC
AAGTCGATTCGCGGGGAGCTGGAGGCGGAGGCGGACAGTCGACAGGGTCG
AAACAAGTTGGAGGGTTCGGGGTGGGGAAAGGGCTTCTTCCTGAGCACGG
GACGGGAGCGCATTGGCGGCAACAGTTCTGGCACCGAGTCAACGACCAAG
CCCACGAAGAGCTGCATAAAGAGCCCAGTAACAAAGACGGCGCGAGTGAA
AAAACACGTGAGCTTCGACCTCCACTCGGCGCCGGCTTCCCGGGAGTCGC
TAGATTTCCTCCCGCGTCGCCGGATCCCGTGCGAGCCCGAGGTGGAAGAG
GAAAAAGACGAGGACAAACGTTTGGAGGCTCAGCGGCGACAAGCATGGAG
TGGCACTGGTTTTCAGGGAAAGCTCCCGGAGACCTCGGAGACGAAGCCTG
CGGGGAAGGCCTTCAGTGGATTGGTCACGGAGGTGGACGGGTGCGGGGGG
CCGCGGAATGGGGGAGGGGAAAGGATAGGCCCGGAGCTTACTTCTCGGCG
TAGCTCTTCGGCCTGCAGTATGACAGATCGGTCGGGGATAGCGCCCCCCG
GCATGTCGAGGTTTAAGGCCAGGGCGTTAGGTGTGGAGTGGGACGGAGGG
AGCGCGTGAGGCGCCAGGGTTCCCCGACGCGGACCCGTGCTGGCCCGGAG
ATATGTACAAAGAAAAGAAGGCGGCGGGCACACAGGTGGGGGAGAACTTG
CTTGTTATGTATGCATGAGGAAAGTCGGACGAAAGAGCACGTTGTGCAAG
GTGTCTCGAGCGCCTGCAGTCCACGGCAATACCGAGGCGCAGCGTTAATC
GTTCATTCCTCTTGATTCTTGTCCTGGTCCAGTAATTACATCTCACATTT
TATGCGCACTATCCCAAGAATCATGTCATCCCATCACCCGTTCATTCTTC
CCCCCCGTCCCCCCCCTCATCGCCTGCCCCTGTGCCGTACCACGCCCTTC
GAATCGAGTCCCAGAAGCTCAAACCCATGATCGCCTGCGGGGCCATGCGG
AAATATGCAGCCCCTGCGCCCTTGTACATCCCGTGCAAGAAGCCTTCGGT
CTGGATGACCTTCCGAAAGCAATCCCAGAAGCCGCGGTAGTACAGGCCTC
GGCCCCGCGCGTCGGTGGGCTGATTGTACAGGCGGGTCCGCACCACGTCC
AGAGGCTCCATGAAGATGATAATATTGACACTCGAAAGCA
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Coding sequence (CDS) from alignment at CM002465.1:728393..730482-

>rna5328 ID=rna5328|Name=rna5328|organism=Nannochloropsis gaditana|type=CDS|length=1308bp|location=Sequence derived from alignment at CM002465.1:728393..730482- (Nannochloropsis gaditana)
ATGCTCGCTGCCTTGCGTCAGGAGGTTGCACTAGCACTTCCTCGACGATA
TCATCCCCCACCCCTTTCTTTTTGGACGTCTCGAATGCAGACAAAGCAAA
TGCGGCTCAAAATATTTAATATTACAACATCACTCATATCCGAACGCTAC
TCTTTGTCCCTTGCAGCAAGCGCACACATATCTGGGACTGGGGTTTCCTT
CCCCCTGGTTAAATCTACCATCGTATCATCGCCGCCTCCGGGGACCACAA
AAAGGGGCGGGTGCACGATGGCAGCAAGCACTTCATCCGCGTCCGGTGAA
GAGGAGGATGTGTTTGAGATCAGAGAGTGGGTGGATGACGAAGGGAAAGA
GGTTTCTTCCGAGGTGTACAGTGTTCGTGAAGCTGCCAGACAGGTGAAGA
AGCTTGACTTGTTGGGTGTTTTGGAAAAGGCAGCCGCGGCGAACAAGAAA
GCGTCTACGGCCGCAGCAATTGCAACAGAAGTAAAGGAGGCGGAGCGAGC
TGCTTTTGGCAATAATCAGACGCCAACATCAAATCGGGATGTCAATAATC
GCGTCGCTGCAGACTCTGAAAGCAGCAACGCGTCTTCAAATGGCTGCAAA
ACGGGGGCATCTTTACCTTCTTCGACACAACAGCTTCTGGACGACCAAGA
TTGGGAAGGTATCAAGGAAAGGGCGAGCGAGATACAATCGCAACAGTTCA
AGTCGATTCGCGGGGAGCTGGAGGCGGAGGCGGACAGTCGACAGGGTCGA
AACAAGTTGGAGGGTTCGGGGTGGGGAAAGGGCTTCTTCCTGAGCACGGG
ACGGGAGCGCATTGGCGGCAACAGTTCTGGCACCGAGTCAACGACCAAGC
CCACGAAGAGCTGCATAAAGAGCCCAGTAACAAAGACGGCGCGAGTGAAA
AAACACGTGAGCTTCGACCTCCACTCGGCGCCGGCTTCCCGGGAGTCGCT
AGATTTCCTCCCGCGTCGCCGGATCCCGTGCGAGCCCGAGGTGGAAGAGG
AAAAAGACGAGGACAAACGTTTGGAGGCTCAGCGGCGACAAGCATGGAGT
GGCACTGGTTTTCAGGGAAAGCTCCCGGAGACCTCGGAGACGAAGCCTGC
GGGGAAGGCCTTCAGTGGATTGGTCACGGAGGTGGACGGGTGCGGGGGGC
CGCGGAATGGGGGAGGGGAAAGGATAGGCCCGGAGCTTACTTCTCGGCGT
AGCTCTTCGGCCTGCAGTATGACAGATCGGTCGGGGATAGCGCCCCCCGG
CATGTCGAGGTTTAAGGCCAGGGCGTTAGGTGTGGAGTGGGACGGAGGGA
GCGCGTGA
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Synonyms
Publications