rna5325, rna5325 (mRNA) Nannochloropsis gaditana

Overview
Namerna5325
Unique Namerna5325
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1458
Alignment locationCM002465.1:719021..720436 +

Link to JBrowse

Properties
Property NameValue
Productduf89 fructose bisphosphatase
Orig transcript idgnl|cribi|Naga_100005g122.6646.mrna
Orig protein idgnl|cribi|Naga_100005g122.6646
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:719021..720436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g122gene5145Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5325rna5325-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25352.1cds5312Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5325 ID=rna5325|Name=rna5325|organism=Nannochloropsis gaditana|type=mRNA|length=1458bp
ATGTTTCCCTCCTCATCCTCCATCAAACGCAGTCTCAGCAACCTCTCCCC
GGCAAAGATCTTGCGGAAAGGCAGCAACAGCAGCCTGAGCACTCAGGGTT
CGCCCGCTAGAAGTCTTTCCGTCACTGAGGACGCGAGCAATAACATGGAG
GCCACCACAACCGCCAGCACACCCACTCCCAGCACTAGCAACACAATGAC
AGTGCCTCCCTCCTCTGGGACCAACAGCAGCACCAACCCCCATGCTGCCA
CAAGCAGGAATCGAAGTCATCAGCTTTCATCCTTGCAAGTCGAAGTCCTG
GAAGTGAAGGATCTCACGGGAGCTTCGGCAGGTCCTCTATACGTGGAATT
ACAGCTCGGGGAACAACGCCTGCGTGCCAACGTGAACAGCCGCCGGGCCA
TGGCGGCGGGTGCCCGTCCTGAAGCCGTGGTCTTCACGCAGAAAAAGTTG
GAGGACCTCTACAAGGAGAACCTTAAGTTCAAACTGATCAACAAGGAAAG
CAAAATGGTGCTGGGGCAGAGTCAACTGCCTGTCAAGAAGCTGATGATCG
GCAAGAAGTTCGAGGCTTTCTTCAATCTGGCCCCGCCGCCCGTAGCCGGC
AAGCGCGCCGCCGAAGTCCACGCAGGGCCCGCTATCCGCCTGTCGGTCGA
GCTGATGGGGCCCCTCCGGAAAGAGTTTCGATTCCTGTCGGATGTGGTGA
GCAAGTACTACTCCACCGTGGACCGCACCTTGGACGGCGCCGCCGCGGCC
GGCCATGCCGCACAGCCCTACGTTGCGAACAAGTGGACCCTCCCCCTCCT
TGTCCCATTCGGGGTCCTATTGCTGGCAGCGTCCCCGTTCATGGGTGTGG
CCCTGACCATAGGCCTGCCCGTCTTCCTCCCCCTCCTCCTCTTGGGGCTG
GTGGCGGGGCTCACCATGCTCATCGCCTCCATCATCCTCGCCCTCTCTTC
GCGCGCTGGCCGGGGCCGCGTAGAGGCCTTGGTGGACCCGGTCATCCGCA
AGCTCACGCACACGGCCACGGGCCAGCAGCTGCTTTACGAGACAGGGCCG
CGCCCCTCCCCGCTTCGCATTGCCAAGACCTTTGCGCCCAAGGGTCGGTG
GGAGCGGTTGGTAACCTCACTCATACTGGACACGATCGGTGCCTCCTCCT
ACCTCCTGCCAGTGCTGGGCGAGTTCACCGACCTGGCGTGGGCCCCTCTT
TTCGCGGTGGCGCTGCACGCCATGTACAGCGAAACCTCTCCGTACGCGCA
CTACGTTGGCCTGGTCGAAGAGCTTCTTCCGTTCACGGACATCATTCCCA
CGGCAACCCTGGCATGGTTCAGGGAGAACGGCGCGGCGCTGGCGAAGGAC
CTGCACATCAGCGCTGTAACGGGGCGGCGGGCGGGGGTTGTGGGAGCCGC
AGGCGCTGGACTTGCGGAAGGGGGCCCTGGAAGCGGTGCTAGTCACGGTC
GTCTGTGA
back to top

protein sequence of rna5325

>rna5325-protein ID=rna5325-protein|Name=rna5325|organism=Nannochloropsis gaditana|type=polypeptide|length=471bp
MSWVRCVFWIAAVQHASSVASAFLGPSSTCSASLARSSTRFVVMAAPTAD
TDLLPSGAKKPRAPLPPVILSNVPGTWAHDTMSRRIRDDILVRIYAENEE
LLAFKPSIKSGLDQLKEELKTPQTSVLPPIQDDGGPDLAVWEGIMAPYAQ
SNWLDAPWLVTEFYFYRRIIQIFEYFRTSYDPFHHQKRLGLEGALELTKE
LVARAEEVHKAGDPETALHFAVFASLWGNKMDLSLWPSQSDGAAANKAQT
FANVLEASSVNLLADDFSTVLAHLRGAGASGRVDIVVDNAGFELVTDLLL
ADALLLHKLASQVVFHLKGHPTFVSDAMEKDVRDTVHYLASHQVVAARDR
WSSYLQTGQWDLRAHNYWAQPFPFWERPDEVTEDLSQSRLVFVKGDANYR
RLLGDRDWPLSTPFADVASYFPSPVTALRTLKAELGCGMAEGEVERARRE
KPRDWMVTGTYGVVQFTDPDV
back to top

mRNA from alignment at CM002465.1:719021..720436+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5325 ID=rna5325|Name=rna5325|organism=Nannochloropsis gaditana|type=mRNA|length=1416bp|location=Sequence derived from alignment at CM002465.1:719021..720436+ (Nannochloropsis gaditana)
ATGTCTTGGGTCAGGTGTGTCTTCTGGATCGCTGCTGTACAACACGCCTC
CTCGGTAGCCTCTGCATTTCTAGGACCGTCATCCACCTGCTCGGCCTCAC
TCGCCCGCTCGAGCACGCGGTTTGTAGTGATGGCTGCACCCACCGCCGAT
ACGGATCTCTTGCCATCGGGGGCTAAAAAGCCTCGTGCGCCGTTGCCGCC
CGTGATTCTATCAAATGTGCCTGGCACTTGGGCGCATGACACCATGTCGC
GGCGGATCCGGGATGACATCCTGGTTCGGATCTATGCTGAGAACGAAGAG
CTCCTTGCGTTCAAACCCAGTATCAAATCAGGACTCGATCAACTTAAAGA
AGAGCTCAAGACTCCACAAACATCCGTCCTTCCGCCGATTCAAGACGACG
GTGGGCCAGACCTGGCCGTATGGGAGGGAATAATGGCACCGTACGCACAA
AGCAACTGGCTAGACGCCCCGTGGTTAGTCACTGAATTTTATTTTTACAG
GCGCATCATCCAGATTTTTGAGTATTTTAGGACCAGCTACGACCCATTTC
ATCACCAGAAACGCTTGGGGCTGGAAGGCGCCCTGGAGTTGACCAAAGAA
TTGGTAGCACGAGCCGAGGAGGTGCACAAGGCGGGGGATCCGGAGACCGC
CCTACACTTCGCGGTCTTCGCTTCCCTCTGGGGAAACAAAATGGACCTGA
GCCTTTGGCCCTCGCAATCGGATGGCGCAGCGGCCAACAAGGCTCAGACC
TTTGCCAACGTGTTGGAAGCAAGCTCGGTGAACCTGCTCGCGGACGACTT
CTCCACCGTCTTGGCCCATTTGCGGGGGGCTGGGGCGAGCGGGCGCGTCG
ACATCGTCGTGGACAATGCGGGCTTCGAGCTCGTGACTGACTTGCTCCTC
GCCGACGCCCTGCTCCTGCACAAACTGGCTTCCCAGGTGGTTTTCCACCT
GAAAGGCCACCCCACCTTTGTCTCGGACGccatggagaaggacgtcAGGG
ACACGGTCCACTACCTCGCCTCCCACCAAGTCGTCGCCGCCCGCGACCGT
TGGTCTTCCTACCTGCAGACCGGGCAGTGGGACCTGCGCGCGCACAACTA
CTGGGCCCagccttttcccttctggGAGCGGCCAGAtgaggtgacggagg
accTGAGCCAGTCCCGCTTGGTATTCGTGAAGGGGGATGCCAACTACCGG
AGGTTGCTGGGCGACCGGGACTGGCCATTGTCCACACCCTTCGCCGACGT
GGCCTCctatttcccctccccggtgACGGCGCTACGCACGCTCAAGGCGG
AGCTGGGGTGTGggatggcggagggggaggtagagagggcgaggcgggag
aaGCCAAGGGACTGGATGGTGACGGGGACGTATGGCGTTGTCCAGTTTAC
CGATCCGGACGTATGA
back to top

Coding sequence (CDS) from alignment at CM002465.1:719021..720436+

>rna5325 ID=rna5325|Name=rna5325|organism=Nannochloropsis gaditana|type=CDS|length=1416bp|location=Sequence derived from alignment at CM002465.1:719021..720436+ (Nannochloropsis gaditana)
ATGTCTTGGGTCAGGTGTGTCTTCTGGATCGCTGCTGTACAACACGCCTC
CTCGGTAGCCTCTGCATTTCTAGGACCGTCATCCACCTGCTCGGCCTCAC
TCGCCCGCTCGAGCACGCGGTTTGTAGTGATGGCTGCACCCACCGCCGAT
ACGGATCTCTTGCCATCGGGGGCTAAAAAGCCTCGTGCGCCGTTGCCGCC
CGTGATTCTATCAAATGTGCCTGGCACTTGGGCGCATGACACCATGTCGC
GGCGGATCCGGGATGACATCCTGGTTCGGATCTATGCTGAGAACGAAGAG
CTCCTTGCGTTCAAACCCAGTATCAAATCAGGACTCGATCAACTTAAAGA
AGAGCTCAAGACTCCACAAACATCCGTCCTTCCGCCGATTCAAGACGACG
GTGGGCCAGACCTGGCCGTATGGGAGGGAATAATGGCACCGTACGCACAA
AGCAACTGGCTAGACGCCCCGTGGTTAGTCACTGAATTTTATTTTTACAG
GCGCATCATCCAGATTTTTGAGTATTTTAGGACCAGCTACGACCCATTTC
ATCACCAGAAACGCTTGGGGCTGGAAGGCGCCCTGGAGTTGACCAAAGAA
TTGGTAGCACGAGCCGAGGAGGTGCACAAGGCGGGGGATCCGGAGACCGC
CCTACACTTCGCGGTCTTCGCTTCCCTCTGGGGAAACAAAATGGACCTGA
GCCTTTGGCCCTCGCAATCGGATGGCGCAGCGGCCAACAAGGCTCAGACC
TTTGCCAACGTGTTGGAAGCAAGCTCGGTGAACCTGCTCGCGGACGACTT
CTCCACCGTCTTGGCCCATTTGCGGGGGGCTGGGGCGAGCGGGCGCGTCG
ACATCGTCGTGGACAATGCGGGCTTCGAGCTCGTGACTGACTTGCTCCTC
GCCGACGCCCTGCTCCTGCACAAACTGGCTTCCCAGGTGGTTTTCCACCT
GAAAGGCCACCCCACCTTTGTCTCGGACGccatggagaaggacgtcAGGG
ACACGGTCCACTACCTCGCCTCCCACCAAGTCGTCGCCGCCCGCGACCGT
TGGTCTTCCTACCTGCAGACCGGGCAGTGGGACCTGCGCGCGCACAACTA
CTGGGCCCagccttttcccttctggGAGCGGCCAGAtgaggtgacggagg
accTGAGCCAGTCCCGCTTGGTATTCGTGAAGGGGGATGCCAACTACCGG
AGGTTGCTGGGCGACCGGGACTGGCCATTGTCCACACCCTTCGCCGACGT
GGCCTCctatttcccctccccggtgACGGCGCTACGCACGCTCAAGGCGG
AGCTGGGGTGTGggatggcggagggggaggtagagagggcgaggcgggag
aaGCCAAGGGACTGGATGGTGACGGGGACGTATGGCGTTGTCCAGTTTAC
CGATCCGGACGTATGA
back to top
Synonyms
Publications