rna5321, rna5321 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5321
Unique Name	rna5321
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2788
Alignment location	CM002465.1:708541..710136 +

Link to JBrowse

Properties


Property Name	Value
Product	peptidyl-prolyl cis-trans isomerase cyclophilin type
Orig transcript id	gnl\|cribi\|Naga_100005g118.6674.mrna
Orig protein id	gnl\|cribi\|Naga_100005g118.6674
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002465.1	supercontig	CM002465.1:708541..710136 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100005g118	gene5141	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5321	rna5321-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25380.1	cds5308	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002465.1:708541..710136+
coding sequence from alignment at CM002465.1:708541..710136+

mRNA sequence

>rna5321 ID=rna5321|Name=rna5321|organism=Nannochloropsis gaditana|type=mRNA|length=2788bp
ATGGATCCAAGCGTAGTCGTCTCAAACAGCATTCGATCATCAATGGGGAG
TACAGCCTGGAGCGTCTCCTCCTGGTTGTCCTCCTTTAATAACGGTGGTA
GGGGCCATGACCCGGCTGTTTCACCTTCCAGGACGCCTCCTCGAGGTGTG
GGCAAGGGCCGGGCCCCTCCGTGTCGTCCGCATCACTCGCACCATTTGCC
GTCAAAGTGCTGTGAAAGAGGTGGCTGTGGAAAGCGCAGCAACGGATGTA
AATATTCTAGCCCAAGCAGGCCGCGGCCAGGCCCCAAATTGCTGTGTCGT
TACGGTATGGGCTGTACACACGTGTCGGACCCTGTCCACGCCGAGCAATT
TTGGCACCCGCCGGTTCCAGGTGAGCCAGTATGTATGACTTTGGAGGACA
GGAATGGAGGCTACGCTGCAGAGGCCAAAGGTGGAGAGAACCTCTTCAGT
GAGTCCTCCTTCGCTGTCACACGTTCATATCCCTGCCATGAATGTGGCCT
TTGCTTCCGGGACCTTTCTGTTTTGCGGCTGCACTTGCAACGCAAAACGG
CCTGGTCCAACCAATCTCTAGTCGGTTGTCGCGTCAGCTGTTTGGTGGAT
CATCGGGAATGGCAGGAGGGCCTGGTGGTGGAGTATCGGGAAGCCGCGGG
GAAGCACAGGATTGTCTTCGAGCACGTGGGAGAGTCGCGGTGGCTGTCGA
TGCTACGCACCGCCTTTTTTATCATCCGTCGCCCCGCAGCACCACCCCCC
TGTCGCTCTCAAAGATCTTCGTCCTCTTCCCTCGCCCCCTTCGACCCTTT
CCTCCCTCACTCGGCCGGGAGCGTGCCGGAGAGCAAGGACGTCGATGCCC
GGGAGAGACAAAAAGACCGAAGCGCCCCGAGCCTGGCTCTCGCCCAATCG
GAACGTGTCGGTCATTGGACGTACGTCGAAGAAATTTCTTTGGGCTACGC
GAGGGCCCAAGCTATCATGCACCGTGCCTACGGCAATCGCATTCAGGAAA
CGGGGCACAAAACGCGTGGGCACCTGTGCGTGACGGAGACGGACCGAGTC
CTGGCGCAGGACGCGCAATCCAGCTTGCTCTACGGGGAGCTACTGCCTCG
CGGAATCAACAAGGCGCTGGGGGACATGCGTTTGCGGGGCTCGGAGGCGG
AAGTGGTTTTCGAGCTGGGGATGGGCATAGGGAAGGTGGCGATGCAGGTC
TTTTTGCAGTTAACGGGCCAAACCGTGACGGAGATAGAGACAGAGGGGGC
GTGGGGTGAGGGGCTTGAGGATGGTGACCCAAGGCGAGGGGGGCGTTTGC
GGCGGGTGTACGGTGTGGAGCTCTCCTCTGCCCGGTTTTTCATCGCGGAG
GCGGCCGCCCATCGCCTGTGCCGGGAGTACCCGCGGGACTTCGGCATTCA
GGCATGGGAGAGGGGCCAGCGCATCGTGGTGGAGAAGATGGGCTCGGGCG
CGGTCTTGGAGATGGAGGTGGGTAACCTCTTGGCCGTGCGGGGCCTGGAC
CGCGCCGACATCGTCCTCCTCGAGACCGACCTGGGCGCCGGCGTGCATCC
GGAGCTCTGCGCTTTGCTTCGGAGCATGAAGAGCGGGGCGCGGGCCTTTA
CCTATCTGGACCTCCGGAGTATTTGGGGGGCAGAGGGAGGGGTAGAGGGG
GAGGTGGAGGCGGGGACCTTCCCCTTCCGGCAGCTGGAGATCAACCGGTC
CGTGTCGGACAGGTATGCCACGTCTTGGAGCGTGAATCGGGGGCACCACT
TCTACCTGTGGATGAAGGTGCTGGAGAGCGGGAGCGACGTCCTCATGGTC
CCAGAGGGCCATCCCGAGCCGAGCGAGTGGGTGCCGGACGCGTGGGCGGG
GGCCGGGCGGGAGAGAGGGCGAGGGCGGGGGCGGACGGTGGGACCCCGTG
GCGTGACCATTGACGGGCAAGGCCAACACGGTCGAGTAATGCCATCCTCC
CGCTCTCACAGCCAAGACAGGCGCCACCATGCGTCCGACACTGTCTCACA
AGATGGACCCCTCAGCCACTCCCCGACCTTCCCCCGAAACCGTCCTCTGG
CCTCCTCCCCTCCAGCTTTCTCGCCTTGCCGATTTCCCGCCCAGGAAATG
CCAAGGAAAGAAGCGCCTTTAAGAAGAAATCAAGGGAAGGGCGGTGGAGG
TTCTGCTCACAAGTCTGTCTTTGTCACATGGGGGAAGGCGGTGCGACGCT
TGGTAGGGCGGGGGGGGGGAGGGCAATGACGACGAGCTGAGAAATGGAAG
GGACTATTCAGTCCTGTCTTGAGCAGCGACCAATGAGTGACCAAGCACGA
TTTCCATCTTTGGTGTGTGAGGGTATTCTCACGCGTATGTATCCGTTGCG
TGCCTACGTCTCGTAGAGATATTTATTCTTCCTTGTCGCGCGAGCGGTGG
GGGAAGACAGTGCAGTAGAGAAGTGAGGGATGGCTGGTGTAGAGTAGTGA
GTGAGTGCGACAGGGGGAACAGAGGGGAAGCGTCGAGGGGTCAACAGAGC
TCACAAGGCTCAGCGATAAATTGATAGCCTCAATTCCCACTCGTCCGTGG
CAAATCCTGGTGGTTCAAGAAAGCAGAAAGCATTCGTACATAGACAGTCT
CAGTACGGAAGACAGACGACGAGGAAATGGAGGGCGTCTGTCGAGGCTAA
ATAAACCATGTAAGCAAAACAGAAAGGTACAGCACACAAGAAAGAAAAGC
CGGTGGCTAAATGGGCGTCCCATCTCGGCGATGTGCGACACGTTTCTTAC
TTACTCCACGGGAGCGTCCAATCCCTGTAGGAATTGCC

protein sequence of rna5321

>rna5321-protein ID=rna5321-protein|Name=rna5321|organism=Nannochloropsis gaditana|type=polypeptide|length=421bp
MRRTSWNGVTTIWVFLVAGTGAQAFFTVSSTRPHSLLSRAACDLNQNKDS
LKQASFPSLQSLPGLGLLALNVLAPSLIPPSAQALPQKAPETNAQMLLID
ALPKKNPVLLDMASSLAKVTTEGSGNIRSIDSKGSKGIKPWPEVQKAARS
ASGTIAGRGKELIKGATDEKAAQAVLTDLNVRIDQLGAAADAQNREAAVT
AQVQALLRLEQLGTLQVPTMPFQPPTVEYPSVPQLLGRAEIEITTRAGKT
RQTRQMYAILDGFSAPLSAGQFVDLAQRKAFDQTKIVATDESSVTITADA
VKSPKRTVPLEILVEGDKEPTYGETLEEQGRFKERVVLPFNAYGTLAMLH
PLDDPNGGANSFFFLKADPSYTPAGLNTLDGAFSVIGYVVQGEDALDDLL
AGDVVENVRVLSGSELLKQGK

mRNA from alignment at CM002465.1:708541..710136+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5321 ID=rna5321|Name=rna5321|organism=Nannochloropsis gaditana|type=mRNA|length=1596bp|location=Sequence derived from alignment at CM002465.1:708541..710136+ (Nannochloropsis gaditana)
CCTCGTCCTTTAATATACTTTGATTATTGCGGAATTAGTACATAAATTCA
AGGTAAAGCAGGGCTTCCAGGCGAGGCTAAGCTCAACTTGTCACCACGGT
TCGAGATGCACCAAAATCAGCGACTCGACCACGTACCACTAGTAGTTTGA
GGCCCGCACAGCTCTTCGAAGAGGACAGATATCTGAATGCCCGTCttttg
gaggaaaagagacgaACTACCAGACCATATTTCATTTTTTATAATGTACA
GCGATGCGCAGGACATCCTGGAACGGCGTTACGACCATTTGGGTGTTCCT
GGTCGCAGGCACAGGTGCGCAAGCCTTCTTCACTGTCTCTTCAACACGGC
CTCATTCACTCCTGTCGAGAGCCGCATGTGATCTAAATCAGAATAAGGAC
TCCCTTAAGCAAGCTTCATTTCCGTCTCTTCAATCTCTTCCCGGTCTGGG
CCTCTTAGCACTTAATGTACTGGCCCCTTCTTTGattcccccgtccgccc
aGGCCCTGCCTCAGAAGGCGCCTGAAACCAATGCACAAATGTTGCTGATC
GATGCCCTTCCGAAAAAGAACCCTGTGCTTCTGGACATGGCATCTTCGTT
GGCCAAGGTCACCACAGAAGGTAGTGGGAATATTCGCTCGATCGACAGCA
AAGGGAGCAAAGGCATCAAGCCCTGGCCAGAGGTTCAGAAAGCCGCCAGG
AGTGCATCGGGCACAATCGCAGGACGTGGCAAAGAATTAATTAAAGGCGC
CACGGATGAGAAGGCTGCTCAGGCTGTCTTGACAGATCTGAATGTCCGAA
TCGATCAATTGGGGGCAGCCGCCGACGCGCAAAACCGGGAAGCCGCCGTC
ACGGCCCAAGTACAGGCACTCTTGCGCCTTGAACAATTGGGTACCTTGCA
GGTTCCGACCATGCCCTTTCAGCCTCCGACAGTGGAGTACCCGAGCGTTC
CCCAACTGCTGGGCCGAGCTGAGATTGAAATCACAACGCGTGCGGGGAAA
ACGAGGCAGACCCGACAAATGTACGCAATTTTAGACGGGTTCAGTGCTCC
CTTGAGCGCCGGCCAGTTTGTGGATTTGGCGCAGAGGAAGGCCTTCGATC
AAACAAAGATAGTAGCCACGGATGAGTCCTCTGTGACAATCACCGCGGAT
GCTGTAAAGTCCCCAAAGCGCACCGTGCCTCTCGAGAtcttggtggaggg
ggacaaggaacCCACGTACGGCGAAactttggaggagcagggtcGGTTCA
AGGAACGCGTGGTCTTACCCTTTAACGCCTATGGGACCTTGGCCATGCTG
CACCCGCTCGACGACCCGAACGGGGGGGCCaattccttcttcttcctgaa
AGCCGACCCAAGCTACACCCCTGCGGGCTTGAATACGCTAGACGGGGCAT
TTAGCGTCATTGGGTACGTCGTGCAGGGTGAGGATGCCTTAGACGACTTG
TTGGCAGGGGATGTGGTCGAAAACGTGAGGGTCCTATCGGGGTCAGAGCT
GCTAAAACAGGGCAAATGACCTTAAATTGCCTTCTAATCGGCCAAATTtg
aaagaaagagatgaaGCTTTGAAAATTGTAATTAGacttgaaaaaa

Coding sequence (CDS) from alignment at CM002465.1:708541..710136+

>rna5321 ID=rna5321|Name=rna5321|organism=Nannochloropsis gaditana|type=CDS|length=1266bp|location=Sequence derived from alignment at CM002465.1:708541..710136+ (Nannochloropsis gaditana)
ATGCGCAGGACATCCTGGAACGGCGTTACGACCATTTGGGTGTTCCTGGT
CGCAGGCACAGGTGCGCAAGCCTTCTTCACTGTCTCTTCAACACGGCCTC
ATTCACTCCTGTCGAGAGCCGCATGTGATCTAAATCAGAATAAGGACTCC
CTTAAGCAAGCTTCATTTCCGTCTCTTCAATCTCTTCCCGGTCTGGGCCT
CTTAGCACTTAATGTACTGGCCCCTTCTTTGattcccccgtccgcccaGG
CCCTGCCTCAGAAGGCGCCTGAAACCAATGCACAAATGTTGCTGATCGAT
GCCCTTCCGAAAAAGAACCCTGTGCTTCTGGACATGGCATCTTCGTTGGC
CAAGGTCACCACAGAAGGTAGTGGGAATATTCGCTCGATCGACAGCAAAG
GGAGCAAAGGCATCAAGCCCTGGCCAGAGGTTCAGAAAGCCGCCAGGAGT
GCATCGGGCACAATCGCAGGACGTGGCAAAGAATTAATTAAAGGCGCCAC
GGATGAGAAGGCTGCTCAGGCTGTCTTGACAGATCTGAATGTCCGAATCG
ATCAATTGGGGGCAGCCGCCGACGCGCAAAACCGGGAAGCCGCCGTCACG
GCCCAAGTACAGGCACTCTTGCGCCTTGAACAATTGGGTACCTTGCAGGT
TCCGACCATGCCCTTTCAGCCTCCGACAGTGGAGTACCCGAGCGTTCCCC
AACTGCTGGGCCGAGCTGAGATTGAAATCACAACGCGTGCGGGGAAAACG
AGGCAGACCCGACAAATGTACGCAATTTTAGACGGGTTCAGTGCTCCCTT
GAGCGCCGGCCAGTTTGTGGATTTGGCGCAGAGGAAGGCCTTCGATCAAA
CAAAGATAGTAGCCACGGATGAGTCCTCTGTGACAATCACCGCGGATGCT
GTAAAGTCCCCAAAGCGCACCGTGCCTCTCGAGAtcttggtggaggggga
caaggaacCCACGTACGGCGAAactttggaggagcagggtcGGTTCAAGG
AACGCGTGGTCTTACCCTTTAACGCCTATGGGACCTTGGCCATGCTGCAC
CCGCTCGACGACCCGAACGGGGGGGCCaattccttcttcttcctgaaAGC
CGACCCAAGCTACACCCCTGCGGGCTTGAATACGCTAGACGGGGCATTTA
GCGTCATTGGGTACGTCGTGCAGGGTGAGGATGCCTTAGACGACTTGTTG
GCAGGGGATGTGGTCGAAAACGTGAGGGTCCTATCGGGGTCAGAGCTGCT
AAAACAGGGCAAATGA

Synonyms

Publications