rna5315, rna5315 (mRNA) Nannochloropsis gaditana

Overview
Namerna5315
Unique Namerna5315
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2331
Alignment locationCM002465.1:694701..695042 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100005g111.6702.mrna
Orig protein idgnl|cribi|Naga_100005g111.6702
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:694701..695042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100005g111gene5135Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25408.1cds5302Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5315rna5315-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5315 ID=rna5315|Name=rna5315|organism=Nannochloropsis gaditana|type=mRNA|length=2331bp
GTTTGTACCTTGAGACTTGAGAGGGTGCTGCTGAGAAAATGGTGACGAGT
TCGTTCCCCTTGCAGAACCATTAGCTGGAGGGGAACGAGCGGAGAGCGGG
AGAAACCGACAAAGTCGCCTAGACAAATACGGCCTCGTTCAGGAATCGCA
AAAACTAAGAGGCACCTCAGCAGTTAAAAAATACATGCGCACCATTGTTC
CATTGATGTGGGACGGGAAAAAAAGCTTTCTATTGTGCTCCAAGAAGCCA
TCCTCTCTGCGTCCATCCCACATCGTATATTACCCATCGTTCCAAGCCAT
CTCCTTTTGTGTGTCACTCCTCTATGACATAGGTCAAGTACGCTAGGTGC
AATACATGCACCTTCATTTTATGAAATTTGGCGAACGACTGGTTGTCTCT
TTCCTGTTTGATTTTGATAGGCGTTGCCCGATCAGATGTTCATGTCTTTA
GTCTCCGGCTCCTCACTGATCAACCATCTTTCCCCACTTCACTCAGGAAT
GTTCGCTTTTCTCTCTCAAGGACCGCTTGGAGAGCTTCTAGCGCCCGTGA
AGGCGCCACACCAACAGCTTCATCAGGCCATCGAGGAACATCGTCACGAC
AAGGCAAACCAGCTTCTGCAAGAAGGAGTGTATTTCAATGCTCCTGACGC
GGGACGGGGGGATGCACTTCCCATCCACACAGCTTGTCAAGCTGGCAACC
AGACGATGATTGACAAGCTGATGGAGATGGGCGCGGACGCGAGGAGCGCC
ACAGACCGCCACGGAAACGGAACCCTGCACGCGGCGGCCAAGGGAGGGAA
GCTGGAGACAGTCAAATTTCTCCTGGCCCATGGATTAGACGTGTCTCGCC
GCAATGCGTACCGACAGACCGCGTATGACGTAGCTGAGAGCCACATTGTC
AGGCAGTTCTTACTGCCGCTCCAGCTGCGTGCGGAGCCCGAGCCCGCGGC
GGGGAGCTTGGCTGCGGTCCACAATCCCGACGTCATCAGAGACTACTCCA
ACCTTCCCCCTCCCCCGACCGCGTCCTCGTACTCCGCCCCTCCTCCTCCC
GCTTCCCTCCATGGGATGAGTAGCAGCGGGACCCATCTCCCGCAAGCCAG
CAAGCCGGCCCCCAAGGTGGATCGGCCCATTGTGGCGGACGGCTTTCATT
GCAGCGTGGGCAACCCCGAGCTCGCGGCCAAGTACGGGCACATCAAGACC
GACATCCCCATGGCCCCTCCGCCGAGTGCGAGTGGCCTTCCCGCCCGGAC
GTGCGCGGGGACCGGGGAAGGCGGGGAAGAGGGGCAGAGAGGGCCCCCGA
GGCCAGCAGCGAACCCGACGCAGTACTCAGCCTTCGCGGCCTACGGAGGA
CGACCCCCGCCTCGTTATGTCACCTACAACGCCAATGACAACACCTCTGC
GCCTTTCATTCATCCTGCAGGCCCACCGCCGCCTGTGCAGCAGCCTCCCG
GCCCCCCGCATTGGCAGCAGATGCACCACCAACAGTCGGGCGGCTTGCTC
ACCCACACCGGTAGAAACGCCTCTTCTCCTCCTCAGACGGCATCTCCTTT
TTCTAACGAGAGCTTTCAACAGGCTCCCTCTCCAGCCGTGCCAAGCGGGT
CTCCTCCTTCCTCCTCCGCCACCAGCTCCCCCGTCCCTCCAGCCGGTTAC
CGGGCCAGCCCTTTGCCTCCGCCCCCCCCCCCCCCCCACCCCTCACGACA
CTGCAGCCTCCCAAACTCCCGTCCTCCATGATCTACCCCTCGCAACACCA
ACAGCCCCAACAGCATCAGGCAGCGCGCCCTAGCTGCACGTCCAACATTC
CCACCCTGCCTGCGGCCAACAGCATCAGTGTCTTCCGACCCGTGGCGGAC
AACGGCGAGGACGCCGTCTCCTTGGACGAGACATAGGGTGGAGAAGGAGG
TACTGCCTGACGCTTTCATGCGACAGGACGCCGAGAAAGATATATCAATG
GAAGGTTGGAGCATGGAGGGATTTGGTTTCTCGCCTGCGGACTTTGCTTG
TTCCAGCAGACGACGATTGGATGACAGATAAATTGCGCGAAATGCCGCGC
CTCCAGGTAGGTAGCTTACTTTCCATAGATGAGGAGCGATCCGTGTTTCG
GCGTATTGCGTGGACTGAAGCAGATGAGCGCGGGAAGCAGCGACGGCGTG
GATAACAGGGAATTCTGGGCAAGAAAGATGTATGCAATAGATGGCTCGCC
ACGTGCACGCAGTGATGAGATAGCGTATTGGGTATGGCACAAGGTGGAAT
TAGATAAGAGACCGGGTCTAGGGGACGCCGCGCATGCTACATAATTTTTA
AAAGAACATTGACATTGATGAGAAAAAAATT
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protein sequence of rna5315

>rna5315-protein ID=rna5315-protein|Name=rna5315|organism=Nannochloropsis gaditana|type=polypeptide|length=113bp
MQYAVAVYRKLVALFLRSGHLNVEYAGTRPLSEAKRVRVPIVLPWVTRLE
GGMSLLFYLHLWDKSLSQIDHMSSGRRTFLRFCIVFVCRRYVRLLGRRKV
VVMVTGLLRSLYV
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mRNA from alignment at CM002465.1:694701..695042-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5315 ID=rna5315|Name=rna5315|organism=Nannochloropsis gaditana|type=mRNA|length=342bp|location=Sequence derived from alignment at CM002465.1:694701..695042- (Nannochloropsis gaditana)
ATGCAATATGCGGTAGCGGTATATAGAAAGCTAGTTGCACTTTTTCTCAG
AAGCGGCCACCTCAACGTGGAATACGCCGGAACCCGTCCGCTCTCCGAAG
CTAAGCGCGTTCGAGTCCCAATAGTACTGCCGTGGGTGACCAGGCTGGAA
GGTGGGATGTCGCTTCTTTTTTATCTTCATTTGTGGGATAAAAGCTTGTC
GCAAATCGACCACATGTCCTCAGGACGACGCACTTTTCTAAGATTTTGTA
TAGTCTTTGTGTGTCGAAGATATGTGCGTCTGCTGGGGCGGAGAAAAGTT
GTAGTCATGGTCACGGGTTTATTACGGTCACTGTATGTCTAG
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Coding sequence (CDS) from alignment at CM002465.1:694701..695042-

>rna5315 ID=rna5315|Name=rna5315|organism=Nannochloropsis gaditana|type=CDS|length=342bp|location=Sequence derived from alignment at CM002465.1:694701..695042- (Nannochloropsis gaditana)
ATGCAATATGCGGTAGCGGTATATAGAAAGCTAGTTGCACTTTTTCTCAG
AAGCGGCCACCTCAACGTGGAATACGCCGGAACCCGTCCGCTCTCCGAAG
CTAAGCGCGTTCGAGTCCCAATAGTACTGCCGTGGGTGACCAGGCTGGAA
GGTGGGATGTCGCTTCTTTTTTATCTTCATTTGTGGGATAAAAGCTTGTC
GCAAATCGACCACATGTCCTCAGGACGACGCACTTTTCTAAGATTTTGTA
TAGTCTTTGTGTGTCGAAGATATGTGCGTCTGCTGGGGCGGAGAAAAGTT
GTAGTCATGGTCACGGGTTTATTACGGTCACTGTATGTCTAG
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Synonyms
Publications