|
|
Properties
| Property Name | Value |
|---|
| Product | tetratricopeptide repeat-containing protein |
| Orig transcript id | gnl|cribi|Naga_100115g20.6572.mrna |
| Orig protein id | gnl|cribi|Naga_100115g20.6572 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:1329951..1333594 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna531 ID=rna531|Name=rna531|organism=Nannochloropsis gaditana|type=mRNA|length=1386bp
GAGGAGGAGGAGATGGGACAGGAGGGAGGCAGGGTCGGAGGAGGGGAGGA
GGAGGGGGGGGAGGAGGGGGAGGAGGAGGAGGGGGAAGACGCAGAGGAAG
AGGAGGAGAAAAAGCTTCACGCGCTCTCTGCGCTGTCGATGTCAGGGAAT
GAGGAGGAGGAGGAGGAGGAAGATGCAGCGGAAGAGGAGGAGGAGGAGAG
GGAGGACGACGACGAGGCTCCGGAGCCTTTTGTGGACCCGCTGAGCATGG
AGGTCATGCGTGACCCGGTATTGACGCCCTCCGGGTATTCTTACGAACGC
GCCGTGATCCTCGAGCAGATTCGACGGCGGGCCTTGGACCCCATGACGCA
GGAACCTTTGCAGGAGACAGACTTGCGGCCAAACCGGGCGCTGCGGGAGA
TGATCGAGATCTGGCGGTGCCAGCGGCAGAGACGCCAGCAGCCACTGCAA
GACGAAGAGAAAGCTGAAAAAGGCACGGTGCATGCTGCGGAGGGCGGTGT
CGGGCGGGAGTGAAGCCCGGGGAAGCACCAGCGAAGGAGATGGGCGGGAC
TACGGCGAAGTGGCCCGTCACACGGCTTGAATTTCCATCCCAGATGGTCG
AATAGATTCGAGCGGGTGCATCCCCACGACGTGTGCTGGCATCCCCCAGG
CTCCCGGCTGGCTGTGGCGGTGGCCACGTAGGGAGGCAGCGTCGGGAGGA
ATGGTGCCTGTGCTTGGATGTGGCTCTTCGCAGATGTCCTCTTTCCAAGG
GAGCTCAACGTGGAAGGGAACGGACTGGAGCACCCTGGGGCTCTGATCTG
TGGCGCCACCCCGCCGTCGGCCAGCCCTACGACTCTCCTTGCACTCCTAG
TTGAAGCCCTCGTATCCCCGCTTATTAATCTTCCCACAACAGATTTCGGT
TGCGTTCGACTGGATCAATTGCGAGGCCTCTTTCTCGCATGTAGAGACTG
GGGTACCTCTCTCGGTGGTCACGCCGTGGGCACGTCCTCCGTGAGCCTGT
TGCATCTCGCCATTCCCTGTCTGAATCATGCCCTCTGCATTTCTGTCTCT
AGACTTGCCCATGAGGAAGGAGCCCATCGGATGATGTGCCCGATAGGATT
CCTTTAGTCAGCGCTGAAGTCGCAATCTATGCATTTCCCGAGGTGATAAT
GAACCGTGGGTGTAATCGAGGCTCTGAGACTTTGTGCGCGAATGGGGCCT
CATGCAAAGGCAAAGGATCTGGAAGGGAAGGATCCAATGACAATAAGAGT
GTTCCTCTTGCATCATGGAACGGCCCATGGTTTTCGCTGTCCCGTTGGGT
GCGAAGAGTTGTCTCAACCTTCTCCCGCCGAAGGTCACGACACCAAGCAG
CGTAAACAAAGCAATGTATGTCGTTGCTAAAAATCG back to topprotein sequence of rna531 >rna531-protein ID=rna531-protein|Name=rna531|organism=Nannochloropsis gaditana|type=polypeptide|length=957bp
MAVGVAAAIPDNRKLSKKEHDLFRSIVKFYETKQYKKGLKAADSILRKYP
SHGETQAMKGLILNCMERKEEAYELVKQGLRNDVRSHVCWHVFGLLHRSD
RNHGEAIKCYLNALRIDTSNMQILKDLANLQVQMRDLDGFVETRRKILSE
NCKLKVHWIGFVLANHLSGDLGMALSVIDSFLGTLEKRERGFEEGELVLY
KAMLLEQAGRKEEALSWLESQKSFVMDGLAWRTRRAHLLLASEQFEKALE
AYRALLAENSENYEYHLGWQCALLRRDSSNSAAMFAQPQASLPSSAAGDL
DEAASQQLLAAYGELARAEPHSLVCEKVPLTFLEGEAFKTRVDAYMRRHL
ARGLPALGSELAALFRTEDPENGRRIQAKDAYDLRKNKRFQIVQLLVDEY
IETLAMTGAFPSPTTSVAPCQNGSHPPSSSPSPSTSQAFDVTTTLLWAKY
LKVQLLESAGEIPEALKLLEECLAACGEDTGAKLDFLQRRARLLKKGGRV
TDAAVVMDEARQLDLSDRYLNNQTTKYLLRAGQVEAAQNVIALFAKHEGD
PQVYLTDMQCMWYELEWAHATFSEATKPSGGGRALIAKALKRYVAVEKHF
ADFVEDQFDFHNYCVRKMTLRAYVDVLRLEDGLLAHPYYLAAARGMLDCY
MAVLEMPKEEEGVEGKDAYAGMTAAEKKKEKAKARKAAKKLEAEAAEKAA
AEKATRVANAGGAGGGKEGEEEGKGKSTTNKKGGDGGKGVVDEDPEGMKL
IEREPLTEMKRVVAYLTRHAGKVVETHMLAYDVACKRGKALLALQALIRA
HALRPMHPDVFRRTVHFWTGMGESGGEGGKQEWIASLHPTSAAVIDAEKQ
RLLGEKKNLGSYVTEYVEKARAWSSLPHVLAAARGVALAKTEPGATEVAI
GLIREELQKGQCRGLTVKGLRQVVEVVGKELDAGSATVAEMKKLCHQYFP
DALEFSC back to topmRNA from alignment at CM002455.1:1329951..1333594- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna531 ID=rna531|Name=rna531|organism=Nannochloropsis gaditana|type=mRNA|length=3644bp|location=Sequence derived from alignment at CM002455.1:1329951..1333594- (Nannochloropsis gaditana)
ACGTGAAGTGCACCACTTGGGAAGAAGGTTTCACCCGGTGTGTTTTTCAG
TCGTTGCCATTGCTACCGCGCCATTACATTTTTGCACACTGTGGTGCTAA
CAGGCGGTCGGTCTGAAAGAAGGATACACCCCCTGCCCTGAGTAGGCTGC
GTGCCCTCATTTGGCTACTTTTTGCACGCGCTGTACAGCTGCATTTGCCG
TACTGCATTGCACAACAGATAGTATGAGGGTCACAATGCGGTATTCTGTT
TTCAGTGGACACGGGCGGCGTCGGCCTGTAGCATGGAGACGTTTTATGTG
AAAGAGCAGCTAGCCTCCCCTCGTTTAGTTGACCACGTTGACAATATTTT
ACTCTCACATTTTTCATTCAAAAGCGGTAAATTCGTCAAGTATGCGTCAT
TGTGATATAGAAAAATGATCGTGATCAATGACGGCGTATGTAAGCATAGT
TTTGGTGCTCATCCACTCCCTCGTGTCCTCTCGTTTCACATGACATGCCA
GCATGGCCGTCGGTGTTGCGGCGGCCATCCCCGACAATCGGAAGCTGTCA
AAGAAGGAACATGATTTATTCCGATCTATCGTTAAGTTCTATGAAACAAA
GCAGTACAAAAAAGGGTTAAAGGCGGCCGATTCCATCCTTCGAAAATACC
CCTCCCACGGCGAGACGCAGGCGATGAAAGGGCTGATTCTAAACTGTATG
GAGAGGAAGGAGGAGGCGTATGAGCTGGTCAAACAAGGTTTGCGGAACGA
CGTTCGAAGTCATGTTTGTTGGCACGTGTTCGGGCTCTTGCATCGCTCCG
ACAGGAACCATGGGGAAGCCATAAAGTGCTACCTAAATGCACTGCGCATT
GATACGTCGAACATGCAAATTTTGAAGGATTTGGCAAATTTGCAGGTGCA
GATGCGAGACTTGGACGGCTTTGTGGAGACACGCCGAAAAATACTGAGCG
AGAACTGCAAATTAAAGGTGCATTGGATCGGCTTCGTCTTGGCGAATCAC
TTATCCGGGGATTTAGGCATGGCCCTTTCCGTCATCGACTCGTTCTTGGG
CACGTTGGAGAAAAGGGAGCGGGGTTTCGAGGAAGGCGAGCTTGTCCTGT
ACAAAGCCATGCTCTTAGAGCAAGCAGGGCGAAAGGAGGAGGCCTTGTCC
TGGCTCGAGTCCCAGAAAAGCTTCGTGATGGACGGACTAGCTTGGCGGAC
TCGACGGGCGCACCTCTTACTCGCGTCGGAACAATTTGAAAAGGCCCTGG
AAGCCTACCGGGCGCTCTTGGCAGAAAACAGCGAAAACTACGAATACCAT
CTTGGATGGCAGTGCGCCCTTTTGCGCCGGGATTCGAGCAACAGCGCGGC
GATGTTTGCTCAACCCCAAGCGAGCCTGCCCAGCTCGGCTGCCGGGGACT
TGGACGAGGCCGCATCCCAGCAACTGCTGGCTGCTTACGGGGAATTGGCA
AGAGCAGAGCCACATTCCTTAGTCTGTGAGAAGGTACCTTTGACATTTTT
GGAAGGGGAGGCATTCAAAACGCGGGTCGATGCGTACATGCGCCGGCATT
TGGCCCGGGGGTTGCCCGCTTTGGGTTCCGAATTGGCCGCTCTTTTTCGG
ACCGAAGATCCCGAGAATGGCCGACGCATCCAAGCCAAGGATGCTTATGA
CCTACGAAAAAACAAGCGGTTCCAAATTGTCCAGCTGCTGGTGGACGAGT
ACATAGAAACCCTCGCCATGACCGGCGCTTTCCCTTCCCCCACCACCTCG
GTCGCCCCCTGTCAAAACGGGTCGCACCCCCCTTCGTCCTCCCCCTCCCC
CTCCACATCCCAAGCCTTCGACGTCACGACCACCCTCCTGTGGGCCAAGT
ACCTCAAAGTCCAATTGCTGGAGTCCGCCGGGGAGATCCCGGAGGCCTTG
AAATTGCTCGAGGAGTGCCTCGCCGCCTGCGGTGAGGATACCGGGGCGAA
ACTGGATTTCCTCCAACGCCGAGCCCGGCTTTTGAAAAAGGGTGGGAGGG
TCACGGATGCGGCCGTGGTGATGGACGAGGCGCGTCAGTTGGACTTGTCG
GACCGGTATTTGAACAACCAGACCACGAAATATTTGTTGCGGGCCGGGCA
GGTGGAGGCTGCCCAGAACGTGATTGCCCTCTTCGCCAAACATGAGGGGG
ATCCTCAGGTCTACTTGACCGATATGCAGTGCATGTGGTACGAGTTGGAA
TGGGCCCATGCCACCTTCTCGGAGGCCACGAAGCCGTCGGGAGGGGGGCG
GGCGTTGATTGCCAAGGCCTTGAAACGTTACGTGGCAGTGGAGAAACATT
TCGCGGACTTTGTGGAGGACCAGTTCGATTTTCACAACTATTGTGTGCGG
AAGATGACCTTGCGCGCCTACGTCGACGTTCTGCGTCTGGAAGATGGCTT
GTTGGCCCACCCGTACTACTTGGCTGCGGCCCGGGGCATGCTGGACTGCT
ACATGGCCGTGCTAGAGATGCCGAAGGAAGAGGAAGGGGTGGAGGGGAAG
GACGCGTACGCGGGTATGACGGCAGCGGAGAAGAAGAAAGAGAAAGCGAA
GGCCCGAAAAGCTGCGAAAAAGTTGGAGGCGGAGGCCGCAGAGAAAGCAG
CTGCAGAGAAGGCGACTCGGGTGGCAAACGCTGGAGGGGCGGGGGGCGGG
AAGGAGGGAGAGGAAGAAGGAAAAGGGAAGTCAACCACGAATAAGAAAGG
CGGTGATGGAGGCAAAGGGGTAGTGGACGAGGACCCTGAGGGTATGAAAT
TGATAGAGCGCGAGCCTCTGACGGAAATGAAGCGGGTTGTAGCGTATTTG
ACGCGGCATGCGGGCAAAGTGGTGGAAACGCACATGTTGGCTTACGACGT
CGCGTGTAAACGAGGCAAGGCTTTGTTGGCATTGCAAGCCTTGATTCGCG
CTCATGCCCTCAGGCCCATGCACCCGGATGTCTTTCGTCGGACGGTACAT
TTTTGGACAGGTATGGGAGAGAGTGGCGGGGAGGGAGGGAAGCAGGAATG
GATTGCTTCTTTGCACCCTACCTCGGCGGCGGTCATCGATGCAGAGAAGC
AAAGATTGCTGGGAGAGAAGAAAAATCTCGGGAGTTACGTGACAGAATAC
GTTGAGAAAGCAAGAGCCTGGTCATCTTTGCCCCACGTGCTGGCCGCCGC
ACGCGGTGTGGCGCTTGCCAAAACGGAGCCAGGCGCGACTGAAGTAGCCA
TCGGATTGATCCGCGAAGAGTTACAGAAGGGCCAATGCCGGGGGCTAACT
GTCAAGGGTCTAAGGCAGGTGGTGGAGGTGGTGGGGAAGGAATTGGACGC
CGGTTCGGCTACAGTGGCGGAGATGAAGAAGTTGTGCCACCAATACTTCC
CAGATGCGCTCGAGTTTTCTTGCTGACGTGGGAAAGGGGTGGAAAGTTTG
GGGGAAATGTGACGGATCGTGGGAGGGAGGAACACAGCTGTTGGCGTGAA
GTGACGAGAGGGCTCGGAAAAAGGAGACCTGGATGTCGGAAAACAGTAGG
ATGCGTTGAACATTGTCTGGAAAGCGGGTCCGATCATAAAGCACGTCTAG
GCCTCATATCGCGAACCCGGGTGGCGTTAGGAACATTTAGAAGAGGAGAC
GCGCAACGACACAGTAAAGTAATTTTAACGGCAGTCACCCGATT back to topCoding sequence (CDS) from alignment at CM002455.1:1329951..1333594- >rna531 ID=rna531|Name=rna531|organism=Nannochloropsis gaditana|type=CDS|length=2874bp|location=Sequence derived from alignment at CM002455.1:1329951..1333594- (Nannochloropsis gaditana)
ATGGCCGTCGGTGTTGCGGCGGCCATCCCCGACAATCGGAAGCTGTCAAA
GAAGGAACATGATTTATTCCGATCTATCGTTAAGTTCTATGAAACAAAGC
AGTACAAAAAAGGGTTAAAGGCGGCCGATTCCATCCTTCGAAAATACCCC
TCCCACGGCGAGACGCAGGCGATGAAAGGGCTGATTCTAAACTGTATGGA
GAGGAAGGAGGAGGCGTATGAGCTGGTCAAACAAGGTTTGCGGAACGACG
TTCGAAGTCATGTTTGTTGGCACGTGTTCGGGCTCTTGCATCGCTCCGAC
AGGAACCATGGGGAAGCCATAAAGTGCTACCTAAATGCACTGCGCATTGA
TACGTCGAACATGCAAATTTTGAAGGATTTGGCAAATTTGCAGGTGCAGA
TGCGAGACTTGGACGGCTTTGTGGAGACACGCCGAAAAATACTGAGCGAG
AACTGCAAATTAAAGGTGCATTGGATCGGCTTCGTCTTGGCGAATCACTT
ATCCGGGGATTTAGGCATGGCCCTTTCCGTCATCGACTCGTTCTTGGGCA
CGTTGGAGAAAAGGGAGCGGGGTTTCGAGGAAGGCGAGCTTGTCCTGTAC
AAAGCCATGCTCTTAGAGCAAGCAGGGCGAAAGGAGGAGGCCTTGTCCTG
GCTCGAGTCCCAGAAAAGCTTCGTGATGGACGGACTAGCTTGGCGGACTC
GACGGGCGCACCTCTTACTCGCGTCGGAACAATTTGAAAAGGCCCTGGAA
GCCTACCGGGCGCTCTTGGCAGAAAACAGCGAAAACTACGAATACCATCT
TGGATGGCAGTGCGCCCTTTTGCGCCGGGATTCGAGCAACAGCGCGGCGA
TGTTTGCTCAACCCCAAGCGAGCCTGCCCAGCTCGGCTGCCGGGGACTTG
GACGAGGCCGCATCCCAGCAACTGCTGGCTGCTTACGGGGAATTGGCAAG
AGCAGAGCCACATTCCTTAGTCTGTGAGAAGGTACCTTTGACATTTTTGG
AAGGGGAGGCATTCAAAACGCGGGTCGATGCGTACATGCGCCGGCATTTG
GCCCGGGGGTTGCCCGCTTTGGGTTCCGAATTGGCCGCTCTTTTTCGGAC
CGAAGATCCCGAGAATGGCCGACGCATCCAAGCCAAGGATGCTTATGACC
TACGAAAAAACAAGCGGTTCCAAATTGTCCAGCTGCTGGTGGACGAGTAC
ATAGAAACCCTCGCCATGACCGGCGCTTTCCCTTCCCCCACCACCTCGGT
CGCCCCCTGTCAAAACGGGTCGCACCCCCCTTCGTCCTCCCCCTCCCCCT
CCACATCCCAAGCCTTCGACGTCACGACCACCCTCCTGTGGGCCAAGTAC
CTCAAAGTCCAATTGCTGGAGTCCGCCGGGGAGATCCCGGAGGCCTTGAA
ATTGCTCGAGGAGTGCCTCGCCGCCTGCGGTGAGGATACCGGGGCGAAAC
TGGATTTCCTCCAACGCCGAGCCCGGCTTTTGAAAAAGGGTGGGAGGGTC
ACGGATGCGGCCGTGGTGATGGACGAGGCGCGTCAGTTGGACTTGTCGGA
CCGGTATTTGAACAACCAGACCACGAAATATTTGTTGCGGGCCGGGCAGG
TGGAGGCTGCCCAGAACGTGATTGCCCTCTTCGCCAAACATGAGGGGGAT
CCTCAGGTCTACTTGACCGATATGCAGTGCATGTGGTACGAGTTGGAATG
GGCCCATGCCACCTTCTCGGAGGCCACGAAGCCGTCGGGAGGGGGGCGGG
CGTTGATTGCCAAGGCCTTGAAACGTTACGTGGCAGTGGAGAAACATTTC
GCGGACTTTGTGGAGGACCAGTTCGATTTTCACAACTATTGTGTGCGGAA
GATGACCTTGCGCGCCTACGTCGACGTTCTGCGTCTGGAAGATGGCTTGT
TGGCCCACCCGTACTACTTGGCTGCGGCCCGGGGCATGCTGGACTGCTAC
ATGGCCGTGCTAGAGATGCCGAAGGAAGAGGAAGGGGTGGAGGGGAAGGA
CGCGTACGCGGGTATGACGGCAGCGGAGAAGAAGAAAGAGAAAGCGAAGG
CCCGAAAAGCTGCGAAAAAGTTGGAGGCGGAGGCCGCAGAGAAAGCAGCT
GCAGAGAAGGCGACTCGGGTGGCAAACGCTGGAGGGGCGGGGGGCGGGAA
GGAGGGAGAGGAAGAAGGAAAAGGGAAGTCAACCACGAATAAGAAAGGCG
GTGATGGAGGCAAAGGGGTAGTGGACGAGGACCCTGAGGGTATGAAATTG
ATAGAGCGCGAGCCTCTGACGGAAATGAAGCGGGTTGTAGCGTATTTGAC
GCGGCATGCGGGCAAAGTGGTGGAAACGCACATGTTGGCTTACGACGTCG
CGTGTAAACGAGGCAAGGCTTTGTTGGCATTGCAAGCCTTGATTCGCGCT
CATGCCCTCAGGCCCATGCACCCGGATGTCTTTCGTCGGACGGTACATTT
TTGGACAGGTATGGGAGAGAGTGGCGGGGAGGGAGGGAAGCAGGAATGGA
TTGCTTCTTTGCACCCTACCTCGGCGGCGGTCATCGATGCAGAGAAGCAA
AGATTGCTGGGAGAGAAGAAAAATCTCGGGAGTTACGTGACAGAATACGT
TGAGAAAGCAAGAGCCTGGTCATCTTTGCCCCACGTGCTGGCCGCCGCAC
GCGGTGTGGCGCTTGCCAAAACGGAGCCAGGCGCGACTGAAGTAGCCATC
GGATTGATCCGCGAAGAGTTACAGAAGGGCCAATGCCGGGGGCTAACTGT
CAAGGGTCTAAGGCAGGTGGTGGAGGTGGTGGGGAAGGAATTGGACGCCG
GTTCGGCTACAGTGGCGGAGATGAAGAAGTTGTGCCACCAATACTTCCCA
GATGCGCTCGAGTTTTCTTGCTGA back to top
|